RNA–Protein interactions for RNA: ENST00000297316.4

SOX17-201, Transcript of SRY-box 17, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX17, Length 2,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX17-201ENST00000297316 J3QL48 77 aa11.34□□□□□ -0.59
SOX17-201ENST00000297316 A6NN06 94 aa11.34□□□□□ -0.59
SOX17-201ENST00000297316 RPL37P61927 97 aaKnown RBP11.29□□□□□ -0.6
SOX17-201ENST00000297316 LRP2P98164 4655 aa11.29□□□□□ -0.6
SOX17-201ENST00000297316 PCLOQ9Y6V0 5065 aa11.24□□□□□ -0.61
SOX17-201ENST00000297316 TPRXLQ17RH7 258 aa11.23□□□□□ -0.61
SOX17-201ENST00000297316 A0A1B0GU69 56 aa11.23□□□□□ -0.61
SOX17-201ENST00000297316 KRTAP3-1Q9BYR8 98 aa11.18□□□□□ -0.62
SOX17-201ENST00000297316 SPATA8Q6RVD6 105 aa11.06□□□□□ -0.64
SOX17-201ENST00000297316 HERC1Q15751 4861 aa11.05□□□□□ -0.64
SOX17-201ENST00000297316 UQCR11O14957 56 aa11.02□□□□□ -0.64
SOX17-201ENST00000297316 COX6B2Q6YFQ2 88 aa11.02□□□□□ -0.65
SOX17-201ENST00000297316 MIR22HGQ0VDD5 57 aa11.01□□□□□ -0.65
SOX17-201ENST00000297316 HMCN2Q8NDA2 5059 aa10.84□□□□□ -0.67
SOX17-201ENST00000297316 PRAC1Q96KF2 57 aa10.84□□□□□ -0.67
SOX17-201ENST00000297316 ADM2Q7Z4H4 148 aa10.83□□□□□ -0.68
SOX17-201ENST00000297316 SEC61BP60468 96 aaKnown RBP10.81□□□□□ -0.68
SOX17-201ENST00000297316 H3BS24 57 aa10.81□□□□□ -0.68
SOX17-201ENST00000297316 MUC17Q685J3 4493 aa10.8□□□□□ -0.68
SOX17-201ENST00000297316 KRTAP4-1Q9BYQ7 146 aa10.79□□□□□ -0.68
SOX17-201ENST00000297316 LINC01554Q52M75 96 aa10.78□□□□□ -0.68
SOX17-201ENST00000297316 KRTAP3-3Q9BYR6 98 aa10.74□□□□□ -0.69
SOX17-201ENST00000297316 MUC2Q02817 5179 aa10.67□□□□□ -0.7
SOX17-201ENST00000297316 H0YAA0 97 aa10.66□□□□□ -0.7
SOX17-201ENST00000297316 S4R3F8 94 aa10.66□□□□□ -0.7
SOX17-201ENST00000297316 H1FX-AS1Q4G0G2 97 aa10.62□□□□□ -0.71
SOX17-201ENST00000297316 A0A1B0GU33 70 aa10.6□□□□□ -0.71
SOX17-201ENST00000297316 CSAG1Q6PB30 78 aa10.51□□□□□ -0.73
SOX17-201ENST00000297316 KRTAP10-6P60371 365 aaPredicted RBP10.46□□□□□ -0.73
SOX17-201ENST00000297316 KRTAP19-2Q3LHN2 52 aa10.46□□□□□ -0.73
SOX17-201ENST00000297316 KRTAP3-2Q9BYR7 98 aa10.45□□□□□ -0.74
SOX17-201ENST00000297316 UBR4Q5T4S7 5183 aa10.43□□□□□ -0.74
SOX17-201ENST00000297316 P0C880 135 aa10.35□□□□□ -0.75
SOX17-201ENST00000297316 RNF213Q63HN8 5207 aa10.33□□□□□ -0.76
SOX17-201ENST00000297316 KRTAP13-4Q3LI77 160 aa10.29□□□□□ -0.76
SOX17-201ENST00000297316 K7ERS5 55 aa10.25□□□□□ -0.77
SOX17-201ENST00000297316 FLGP20930 4061 aaPredicted RBP10.24□□□□□ -0.77
SOX17-201ENST00000297316 KRTAP25-1Q3LHN0 102 aa10.22□□□□□ -0.77
SOX17-201ENST00000297316 FAT4Q6V0I7 4981 aa10.21□□□□□ -0.77
SOX17-201ENST00000297316 LCE2CQ5TA81 110 aa10.16□□□□□ -0.78
SOX17-201ENST00000297316 A0A0D9SG42 100 aa10.11□□□□□ -0.79
SOX17-201ENST00000297316 CRIPTQ9P021 101 aa10.08□□□□□ -0.8
SOX17-201ENST00000297316 ROMO1P60602 79 aa10.08□□□□□ -0.8
SOX17-201ENST00000297316 LORP23490 312 aaPredicted RBP9.95□□□□□ -0.82
SOX17-201ENST00000297316 MT1HP80294 61 aa9.93□□□□□ -0.82
SOX17-201ENST00000297316 M0QZ58 72 aa9.92□□□□□ -0.82
SOX17-201ENST00000297316 KRTAP12-2P59991 146 aa9.88□□□□□ -0.83
SOX17-201ENST00000297316 M0R2T5 61 aa9.85□□□□□ -0.83
SOX17-201ENST00000297316 KRTAP12-1P59990 96 aa9.84□□□□□ -0.83
SOX17-201ENST00000297316 R4GN34 69 aa9.83□□□□□ -0.84
SOX17-201ENST00000297316 SPINT4Q6UDR6 99 aa9.79□□□□□ -0.84
SOX17-201ENST00000297316 C10orf95Q9H7T3 257 aa9.73□□□□□ -0.85
SOX17-201ENST00000297316 KRTAP9-8Q9BYQ0 159 aa9.59□□□□□ -0.87
SOX17-201ENST00000297316 MT2AP02795 61 aa9.57□□□□□ -0.88
SOX17-201ENST00000297316 MT1FP04733 61 aa9.56□□□□□ -0.88
SOX17-201ENST00000297316 KRTAP10-10P60014 251 aa9.5□□□□□ -0.89
SOX17-201ENST00000297316 KRTAP19-1Q8IUB9 90 aa9.43□□□□□ -0.9
SOX17-201ENST00000297316 NDUFAF8A1L188 74 aa9.4□□□□□ -0.9
SOX17-201ENST00000297316 LCE2AQ5TA79 106 aaPredicted RBP9.4□□□□□ -0.9
SOX17-201ENST00000297316 SPRR2GQ9BYE4 73 aa9.38□□□□□ -0.91
SOX17-201ENST00000297316 KRTAP15-1Q3LI76 137 aa9.34□□□□□ -0.91
SOX17-201ENST00000297316 A0A0A0MQY5 61 aa9.27□□□□□ -0.92
SOX17-201ENST00000297316 CAMK2N1Q7Z7J9 78 aa9.25□□□□□ -0.93
SOX17-201ENST00000297316 KRTAP9-3Q9BYQ3 159 aa9.22□□□□□ -0.93
SOX17-201ENST00000297316 KRTAP19-8Q3LI54 63 aa9.1□□□□□ -0.95
SOX17-201ENST00000297316 PLAC4Q8WY50 150 aa9.09□□□□□ -0.95
SOX17-201ENST00000297316 MT1BP07438 61 aa9.06□□□□□ -0.96
SOX17-201ENST00000297316 LCE2BO14633 110 aa9□□□□□ -0.97
SOX17-201ENST00000297316 USH2AO75445 5202 aa8.88□□□□□ -0.99
SOX17-201ENST00000297316 LUZP6Q538Z0 58 aa8.86□□□□□ -0.99
SOX17-201ENST00000297316 PP632Q6XCG6 107 aa8.86□□□□□ -0.99
SOX17-201ENST00000297316 TNP1P09430 55 aa8.83□□□□□ -1
SOX17-201ENST00000297316 MT1XP80297 61 aa8.8□□□□□ -1
SOX17-201ENST00000297316 KRTAP10-5P60370 271 aa8.79□□□□□ -1
SOX17-201ENST00000297316 KRTAP23-1A1A580 65 aa8.58□□□□□ -1.04
SOX17-201ENST00000297316 PRO2289Q9P1D8 64 aa8.53□□□□□ -1.04
SOX17-201ENST00000297316 LCE3AQ5TA76 89 aa8.52□□□□□ -1.05
SOX17-201ENST00000297316 SSPOA2VEC9 5147 aa8.52□□□□□ -1.05
SOX17-201ENST00000297316 FSIP2Q5CZC0 6907 aa8.51□□□□□ -1.05
SOX17-201ENST00000297316 KRTAP10-7P60409 375 aaPredicted RBP8.51□□□□□ -1.05
SOX17-201ENST00000297316 LCE2DQ5TA82 110 aaPredicted RBP8.38□□□□□ -1.07
SOX17-201ENST00000297316 KRTAP10-12P60413 245 aa8.36□□□□□ -1.07
SOX17-201ENST00000297316 KMT2DO14686 5537 aa8.33□□□□□ -1.08
SOX17-201ENST00000297316 SPRR5A0A1B0GTR4 108 aa8.29□□□□□ -1.08
SOX17-201ENST00000297316 KRTAP19-6Q3LI70 58 aa8.29□□□□□ -1.08
SOX17-201ENST00000297316 KRTAP8-1Q8IUC2 63 aa8.28□□□□□ -1.08
SOX17-201ENST00000297316 KRTAP4-8A0A0G2JLE6 195 aa8.19□□□□□ -1.1
SOX17-201ENST00000297316 KRTAP4-8Q9BYQ9 185 aa8.19□□□□□ -1.1
SOX17-201ENST00000297316 KRTAP12-3P60328 96 aa8.11□□□□□ -1.11
SOX17-201ENST00000297316 FCGBPQ9Y6R7 5405 aaPredicted RBP8.1□□□□□ -1.11
SOX17-201ENST00000297316 KRTAP9-2Q9BYQ4 174 aa8.09□□□□□ -1.11
SOX17-201ENST00000297316 KRTAP19-5Q3LI72 72 aa8.01□□□□□ -1.13
SOX17-201ENST00000297316 KRTAP19-7Q3SYF9 63 aa7.86□□□□□ -1.15
SOX17-201ENST00000297316 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
SOX17-201ENST00000297316 MACF1Q9UPN3 7388 aaKnown RBP7.68□□□□□ -1.18
SOX17-201ENST00000297316 MT1EP04732 61 aa7.68□□□□□ -1.18
SOX17-201ENST00000297316 MUC12Q9UKN1 5478 aa7.6□□□□□ -1.19
SOX17-201ENST00000297316 LCE3CQ5T5A8 94 aa7.6□□□□□ -1.19
SOX17-201ENST00000297316 INE1O15225 51 aa7.56□□□□□ -1.2
SOX17-201ENST00000297316 MT1LQ93083 61 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms