RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 EPPK1P58107 5090 aaKnown RBP12.39□□□□□ -0.43
TRIM54-201ENST00000296098 KTN1-AS1Q86SY8 53 aa12.36□□□□□ -0.43
TRIM54-201ENST00000296098 TPRXLQ17RH7 258 aa12.3□□□□□ -0.44
TRIM54-201ENST00000296098 KRTAP4-5Q9BYR2 181 aa12.23□□□□□ -0.45
TRIM54-201ENST00000296098 A0A1B0GU33 70 aa12.22□□□□□ -0.45
TRIM54-201ENST00000296098 H1FX-AS1Q4G0G2 97 aa12.2□□□□□ -0.46
TRIM54-201ENST00000296098 H0YAA0 97 aa12.19□□□□□ -0.46
TRIM54-201ENST00000296098 KRTAP3-3Q9BYR6 98 aa12.18□□□□□ -0.46
TRIM54-201ENST00000296098 S4R3F8 94 aa12.17□□□□□ -0.46
TRIM54-201ENST00000296098 LRP2P98164 4655 aa12□□□□□ -0.49
TRIM54-201ENST00000296098 RBM12B-AS1Q9P1G2 102 aa11.98□□□□□ -0.49
TRIM54-201ENST00000296098 KRTAP10-6P60371 365 aaPredicted RBP11.97□□□□□ -0.49
TRIM54-201ENST00000296098 ABCA13Q86UQ4 5058 aa11.95□□□□□ -0.5
TRIM54-201ENST00000296098 LPAP08519 4548 aa11.94□□□□□ -0.5
TRIM54-201ENST00000296098 KRTAP3-2Q9BYR7 98 aa11.93□□□□□ -0.5
TRIM54-201ENST00000296098 J3QL48 77 aa11.91□□□□□ -0.5
TRIM54-201ENST00000296098 ADM2Q7Z4H4 148 aa11.87□□□□□ -0.51
TRIM54-201ENST00000296098 PRAC1Q96KF2 57 aa11.87□□□□□ -0.51
TRIM54-201ENST00000296098 SEC61BP60468 96 aaKnown RBP11.84□□□□□ -0.51
TRIM54-201ENST00000296098 P0C880 135 aa11.79□□□□□ -0.52
TRIM54-201ENST00000296098 KRTAP13-4Q3LI77 160 aa11.79□□□□□ -0.52
TRIM54-201ENST00000296098 CSAG1Q6PB30 78 aa11.78□□□□□ -0.52
TRIM54-201ENST00000296098 K7ERS5 55 aa11.76□□□□□ -0.53
TRIM54-201ENST00000296098 HERC2O95714 4834 aa11.69□□□□□ -0.54
TRIM54-201ENST00000296098 A0A0D9SG42 100 aa11.65□□□□□ -0.54
TRIM54-201ENST00000296098 BIRC6Q9NR09 4857 aa11.6□□□□□ -0.55
TRIM54-201ENST00000296098 KRTAP4-1Q9BYQ7 146 aa11.6□□□□□ -0.55
TRIM54-201ENST00000296098 MUC17Q685J3 4493 aa11.58□□□□□ -0.56
TRIM54-201ENST00000296098 M0QZ58 72 aa11.47□□□□□ -0.57
TRIM54-201ENST00000296098 ROMO1P60602 79 aa11.42□□□□□ -0.58
TRIM54-201ENST00000296098 KRTAP12-2P59991 146 aa11.38□□□□□ -0.59
TRIM54-201ENST00000296098 KRTAP19-2Q3LHN2 52 aa11.38□□□□□ -0.59
TRIM54-201ENST00000296098 LINC01554Q52M75 96 aa11.36□□□□□ -0.59
TRIM54-201ENST00000296098 KRTAP25-1Q3LHN0 102 aa11.35□□□□□ -0.59
TRIM54-201ENST00000296098 KRTAP12-1P59990 96 aa11.35□□□□□ -0.59
TRIM54-201ENST00000296098 SPINT4Q6UDR6 99 aa11.3□□□□□ -0.6
TRIM54-201ENST00000296098 R4GN34 69 aa11.25□□□□□ -0.61
TRIM54-201ENST00000296098 CRIPTQ9P021 101 aa11.23□□□□□ -0.61
TRIM54-201ENST00000296098 LORP23490 312 aaPredicted RBP11.13□□□□□ -0.63
TRIM54-201ENST00000296098 PCLOQ9Y6V0 5065 aa11.13□□□□□ -0.63
TRIM54-201ENST00000296098 HMCN2Q8NDA2 5059 aa11.08□□□□□ -0.64
TRIM54-201ENST00000296098 HERC1Q15751 4861 aa11.06□□□□□ -0.64
TRIM54-201ENST00000296098 MUC2Q02817 5179 aa11.01□□□□□ -0.65
TRIM54-201ENST00000296098 FLGP20930 4061 aaPredicted RBP10.99□□□□□ -0.65
TRIM54-201ENST00000296098 C10orf95Q9H7T3 257 aa10.92□□□□□ -0.66
TRIM54-201ENST00000296098 LCE2CQ5TA81 110 aa10.83□□□□□ -0.68
TRIM54-201ENST00000296098 H3BS24 57 aa10.72□□□□□ -0.69
TRIM54-201ENST00000296098 CAMK2N1Q7Z7J9 78 aa10.64□□□□□ -0.71
TRIM54-201ENST00000296098 MT1HP80294 61 aa10.58□□□□□ -0.72
TRIM54-201ENST00000296098 M0R2T5 61 aa10.57□□□□□ -0.72
TRIM54-201ENST00000296098 RNF213Q63HN8 5207 aa10.55□□□□□ -0.72
TRIM54-201ENST00000296098 FAT4Q6V0I7 4981 aa10.54□□□□□ -0.72
TRIM54-201ENST00000296098 UBR4Q5T4S7 5183 aa10.51□□□□□ -0.73
TRIM54-201ENST00000296098 SPRR2GQ9BYE4 73 aa10.45□□□□□ -0.74
TRIM54-201ENST00000296098 KRTAP19-1Q8IUB9 90 aa10.37□□□□□ -0.75
TRIM54-201ENST00000296098 MT2AP02795 61 aa10.33□□□□□ -0.76
TRIM54-201ENST00000296098 MT1FP04733 61 aa10.31□□□□□ -0.76
TRIM54-201ENST00000296098 KRTAP10-10P60014 251 aa10.29□□□□□ -0.76
TRIM54-201ENST00000296098 PP632Q6XCG6 107 aa10.28□□□□□ -0.76
TRIM54-201ENST00000296098 PLAC4Q8WY50 150 aa10.28□□□□□ -0.76
TRIM54-201ENST00000296098 KRTAP9-8Q9BYQ0 159 aa10.28□□□□□ -0.76
TRIM54-201ENST00000296098 KRTAP15-1Q3LI76 137 aa10.24□□□□□ -0.77
TRIM54-201ENST00000296098 TNP1P09430 55 aa10.21□□□□□ -0.78
TRIM54-201ENST00000296098 KRTAP19-8Q3LI54 63 aa10.04□□□□□ -0.8
TRIM54-201ENST00000296098 KRTAP23-1A1A580 65 aa10.04□□□□□ -0.8
TRIM54-201ENST00000296098 MT1BP07438 61 aa9.9□□□□□ -0.82
TRIM54-201ENST00000296098 KRTAP9-3Q9BYQ3 159 aa9.87□□□□□ -0.83
TRIM54-201ENST00000296098 NDUFAF8A1L188 74 aa9.81□□□□□ -0.84
TRIM54-201ENST00000296098 KRTAP10-5P60370 271 aa9.75□□□□□ -0.85
TRIM54-201ENST00000296098 MT1XP80297 61 aa9.75□□□□□ -0.85
TRIM54-201ENST00000296098 LCE3AQ5TA76 89 aa9.7□□□□□ -0.86
TRIM54-201ENST00000296098 LCE2AQ5TA79 106 aaPredicted RBP9.61□□□□□ -0.87
TRIM54-201ENST00000296098 PRO2289Q9P1D8 64 aa9.51□□□□□ -0.89
TRIM54-201ENST00000296098 LCE2BO14633 110 aa9.5□□□□□ -0.89
TRIM54-201ENST00000296098 KRTAP10-12P60413 245 aa9.48□□□□□ -0.89
TRIM54-201ENST00000296098 KRTAP8-1Q8IUC2 63 aa9.48□□□□□ -0.89
TRIM54-201ENST00000296098 LUZP6Q538Z0 58 aa9.46□□□□□ -0.89
TRIM54-201ENST00000296098 SPRR5A0A1B0GTR4 108 aa9.42□□□□□ -0.9
TRIM54-201ENST00000296098 KRTAP10-7P60409 375 aaPredicted RBP9.42□□□□□ -0.9
TRIM54-201ENST00000296098 KRTAP12-3P60328 96 aa9.26□□□□□ -0.93
TRIM54-201ENST00000296098 USH2AO75445 5202 aa9.09□□□□□ -0.95
TRIM54-201ENST00000296098 KRTAP19-5Q3LI72 72 aa8.98□□□□□ -0.97
TRIM54-201ENST00000296098 KRTAP4-8A0A0G2JLE6 195 aa8.87□□□□□ -0.99
TRIM54-201ENST00000296098 KRTAP4-8Q9BYQ9 185 aa8.87□□□□□ -0.99
TRIM54-201ENST00000296098 A0A0A0MQY5 61 aa8.79□□□□□ -1
TRIM54-201ENST00000296098 KMT2DO14686 5537 aa8.76□□□□□ -1.01
TRIM54-201ENST00000296098 SSPOA2VEC9 5147 aa8.75□□□□□ -1.01
TRIM54-201ENST00000296098 KRTAP19-6Q3LI70 58 aa8.7□□□□□ -1.02
TRIM54-201ENST00000296098 LCE3CQ5T5A8 94 aa8.7□□□□□ -1.02
TRIM54-201ENST00000296098 KRTAP19-7Q3SYF9 63 aa8.68□□□□□ -1.02
TRIM54-201ENST00000296098 MT1EP04732 61 aa8.47□□□□□ -1.05
TRIM54-201ENST00000296098 KRTAP19-4Q3LI73 84 aa8.42□□□□□ -1.06
TRIM54-201ENST00000296098 LCE2DQ5TA82 110 aaPredicted RBP8.42□□□□□ -1.06
TRIM54-201ENST00000296098 MT1LQ93083 61 aa8.42□□□□□ -1.06
TRIM54-201ENST00000296098 KRTAP4-7Q9BYR0 210 aa8.32□□□□□ -1.08
TRIM54-201ENST00000296098 KRTAP9-6A8MVA2 160 aa8.3□□□□□ -1.08
TRIM54-201ENST00000296098 FSIP2Q5CZC0 6907 aa8.28□□□□□ -1.08
TRIM54-201ENST00000296098 FCGBPQ9Y6R7 5405 aaPredicted RBP8.14□□□□□ -1.11
TRIM54-201ENST00000296098 KRTAP19-3Q7Z4W3 81 aa8.01□□□□□ -1.13
TRIM54-201ENST00000296098 INE1O15225 51 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms