RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MIR22HGQ0VDD5 57 aa10.54□□□□□ -0.72
VPS53-201ENST00000291074 COX6B2Q6YFQ2 88 aa10.5□□□□□ -0.73
VPS53-201ENST00000291074 XP32Q5T750 250 aa10.48□□□□□ -0.73
VPS53-201ENST00000291074 H3BS24 57 aa10.48□□□□□ -0.73
VPS53-201ENST00000291074 RPL37P61927 97 aaKnown RBP10.48□□□□□ -0.73
VPS53-201ENST00000291074 MT1HL1P0DM35 61 aa10.47□□□□□ -0.73
VPS53-201ENST00000291074 CSAG1Q6PB30 78 aa10.47□□□□□ -0.73
VPS53-201ENST00000291074 EPPK1P58107 5090 aaKnown RBP10.45□□□□□ -0.74
VPS53-201ENST00000291074 H0YAA0 97 aa10.32□□□□□ -0.76
VPS53-201ENST00000291074 A0A1B0GU33 70 aa10.28□□□□□ -0.76
VPS53-201ENST00000291074 H1FX-AS1Q4G0G2 97 aa10.26□□□□□ -0.77
VPS53-201ENST00000291074 KRTAP3-3Q9BYR6 98 aa10.25□□□□□ -0.77
VPS53-201ENST00000291074 LPAP08519 4548 aa10.24□□□□□ -0.77
VPS53-201ENST00000291074 LRP2P98164 4655 aa10.24□□□□□ -0.77
VPS53-201ENST00000291074 KRTAP4-5Q9BYR2 181 aa10.21□□□□□ -0.78
VPS53-201ENST00000291074 ABCA13Q86UQ4 5058 aa10.16□□□□□ -0.78
VPS53-201ENST00000291074 S4R3F8 94 aa10.15□□□□□ -0.78
VPS53-201ENST00000291074 TPRXLQ17RH7 258 aa10.12□□□□□ -0.79
VPS53-201ENST00000291074 KRTAP10-6P60371 365 aaPredicted RBP10.09□□□□□ -0.79
VPS53-201ENST00000291074 KRTAP3-2Q9BYR7 98 aa10.04□□□□□ -0.8
VPS53-201ENST00000291074 CRIPTQ9P021 101 aa10.03□□□□□ -0.8
VPS53-201ENST00000291074 KRTAP25-1Q3LHN0 102 aa10□□□□□ -0.81
VPS53-201ENST00000291074 KRTAP13-4Q3LI77 160 aa9.99□□□□□ -0.81
VPS53-201ENST00000291074 P0C880 135 aa9.95□□□□□ -0.82
VPS53-201ENST00000291074 ROMO1P60602 79 aa9.95□□□□□ -0.82
VPS53-201ENST00000291074 A0A0D9SG42 100 aa9.89□□□□□ -0.83
VPS53-201ENST00000291074 K7ERS5 55 aa9.83□□□□□ -0.84
VPS53-201ENST00000291074 HERC2O95714 4834 aa9.83□□□□□ -0.84
VPS53-201ENST00000291074 J3QL48 77 aa9.8□□□□□ -0.84
VPS53-201ENST00000291074 MUC17Q685J3 4493 aa9.78□□□□□ -0.84
VPS53-201ENST00000291074 SEC61BP60468 96 aaKnown RBP9.74□□□□□ -0.85
VPS53-201ENST00000291074 KRTAP4-1Q9BYQ7 146 aa9.73□□□□□ -0.85
VPS53-201ENST00000291074 KRTAP12-2P59991 146 aa9.63□□□□□ -0.87
VPS53-201ENST00000291074 BIRC6Q9NR09 4857 aa9.61□□□□□ -0.87
VPS53-201ENST00000291074 KRTAP12-1P59990 96 aa9.56□□□□□ -0.88
VPS53-201ENST00000291074 SPINT4Q6UDR6 99 aa9.55□□□□□ -0.88
VPS53-201ENST00000291074 M0QZ58 72 aa9.53□□□□□ -0.88
VPS53-201ENST00000291074 C10orf95Q9H7T3 257 aa9.5□□□□□ -0.89
VPS53-201ENST00000291074 KRTAP19-2Q3LHN2 52 aa9.49□□□□□ -0.89
VPS53-201ENST00000291074 MUC2Q02817 5179 aa9.48□□□□□ -0.89
VPS53-201ENST00000291074 LORP23490 312 aaPredicted RBP9.43□□□□□ -0.9
VPS53-201ENST00000291074 R4GN34 69 aa9.41□□□□□ -0.9
VPS53-201ENST00000291074 HERC1Q15751 4861 aa9.4□□□□□ -0.9
VPS53-201ENST00000291074 PCLOQ9Y6V0 5065 aa9.37□□□□□ -0.91
VPS53-201ENST00000291074 NDUFAF8A1L188 74 aa9.37□□□□□ -0.91
VPS53-201ENST00000291074 HMCN2Q8NDA2 5059 aa9.28□□□□□ -0.92
VPS53-201ENST00000291074 KRTAP15-1Q3LI76 137 aa9.27□□□□□ -0.93
VPS53-201ENST00000291074 FLGP20930 4061 aaPredicted RBP9.24□□□□□ -0.93
VPS53-201ENST00000291074 FAT4Q6V0I7 4981 aa9.06□□□□□ -0.96
VPS53-201ENST00000291074 LCE2CQ5TA81 110 aa9.01□□□□□ -0.97
VPS53-201ENST00000291074 CAMK2N1Q7Z7J9 78 aa8.91□□□□□ -0.98
VPS53-201ENST00000291074 UBR4Q5T4S7 5183 aa8.9□□□□□ -0.98
VPS53-201ENST00000291074 RNF213Q63HN8 5207 aa8.89□□□□□ -0.99
VPS53-201ENST00000291074 M0R2T5 61 aa8.78□□□□□ -1
VPS53-201ENST00000291074 MT1HP80294 61 aa8.77□□□□□ -1
VPS53-201ENST00000291074 KRTAP19-1Q8IUB9 90 aa8.67□□□□□ -1.02
VPS53-201ENST00000291074 A0A0A0MQY5 61 aa8.66□□□□□ -1.02
VPS53-201ENST00000291074 SPRR2GQ9BYE4 73 aa8.66□□□□□ -1.02
VPS53-201ENST00000291074 PLAC4Q8WY50 150 aa8.61□□□□□ -1.03
VPS53-201ENST00000291074 MT1FP04733 61 aa8.6□□□□□ -1.03
VPS53-201ENST00000291074 MT2AP02795 61 aa8.59□□□□□ -1.03
VPS53-201ENST00000291074 KRTAP10-10P60014 251 aa8.56□□□□□ -1.04
VPS53-201ENST00000291074 KRTAP9-8Q9BYQ0 159 aa8.54□□□□□ -1.04
VPS53-201ENST00000291074 LUZP6Q538Z0 58 aa8.54□□□□□ -1.04
VPS53-201ENST00000291074 PP632Q6XCG6 107 aa8.53□□□□□ -1.04
VPS53-201ENST00000291074 TNP1P09430 55 aa8.52□□□□□ -1.05
VPS53-201ENST00000291074 KRTAP19-8Q3LI54 63 aa8.3□□□□□ -1.08
VPS53-201ENST00000291074 KRTAP23-1A1A580 65 aa8.28□□□□□ -1.08
VPS53-201ENST00000291074 MT1BP07438 61 aa8.26□□□□□ -1.09
VPS53-201ENST00000291074 KRTAP9-3Q9BYQ3 159 aa8.18□□□□□ -1.1
VPS53-201ENST00000291074 LCE3AQ5TA76 89 aa8.17□□□□□ -1.1
VPS53-201ENST00000291074 KRTAP10-5P60370 271 aa8.15□□□□□ -1.11
VPS53-201ENST00000291074 MT1XP80297 61 aa8.14□□□□□ -1.11
VPS53-201ENST00000291074 LCE2AQ5TA79 106 aaPredicted RBP7.93□□□□□ -1.14
VPS53-201ENST00000291074 LCE2BO14633 110 aa7.92□□□□□ -1.14
VPS53-201ENST00000291074 KRTAP10-7P60409 375 aaPredicted RBP7.92□□□□□ -1.14
VPS53-201ENST00000291074 SPRR5A0A1B0GTR4 108 aa7.92□□□□□ -1.14
VPS53-201ENST00000291074 KRTAP10-12P60413 245 aa7.9□□□□□ -1.14
VPS53-201ENST00000291074 KRTAP8-1Q8IUC2 63 aa7.9□□□□□ -1.14
VPS53-201ENST00000291074 USH2AO75445 5202 aa7.85□□□□□ -1.15
VPS53-201ENST00000291074 PRO2289Q9P1D8 64 aa7.8□□□□□ -1.16
VPS53-201ENST00000291074 KRTAP12-3P60328 96 aa7.75□□□□□ -1.17
VPS53-201ENST00000291074 KMT2DO14686 5537 aa7.61□□□□□ -1.19
VPS53-201ENST00000291074 KRTAP19-5Q3LI72 72 aa7.54□□□□□ -1.2
VPS53-201ENST00000291074 KRTAP4-8A0A0G2JLE6 195 aa7.51□□□□□ -1.21
VPS53-201ENST00000291074 KRTAP4-8Q9BYQ9 185 aa7.51□□□□□ -1.21
VPS53-201ENST00000291074 SSPOA2VEC9 5147 aa7.34□□□□□ -1.23
VPS53-201ENST00000291074 LCE3CQ5T5A8 94 aa7.28□□□□□ -1.24
VPS53-201ENST00000291074 KRTAP19-7Q3SYF9 63 aa7.26□□□□□ -1.25
VPS53-201ENST00000291074 FSIP2Q5CZC0 6907 aa7.24□□□□□ -1.25
VPS53-201ENST00000291074 INE1O15225 51 aa7.22□□□□□ -1.25
VPS53-201ENST00000291074 KRTAP19-6Q3LI70 58 aa7.16□□□□□ -1.26
VPS53-201ENST00000291074 KRTAP4-7Q9BYR0 210 aa7.1□□□□□ -1.27
VPS53-201ENST00000291074 KRTAP9-6A8MVA2 160 aa7.06□□□□□ -1.28
VPS53-201ENST00000291074 MT1EP04732 61 aa7.05□□□□□ -1.28
VPS53-201ENST00000291074 MT1LQ93083 61 aa7.02□□□□□ -1.29
VPS53-201ENST00000291074 LCE2DQ5TA82 110 aaPredicted RBP6.96□□□□□ -1.3
VPS53-201ENST00000291074 KRTAP19-4Q3LI73 84 aa6.95□□□□□ -1.3
VPS53-201ENST00000291074 FCGBPQ9Y6R7 5405 aaPredicted RBP6.87□□□□□ -1.31
VPS53-201ENST00000291074 MUC12Q9UKN1 5478 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms