RNA–Protein interactions for RNA: ENST00000287814.4

TIMP4-201, Transcript of TIMP metallopeptidase inhibitor 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP4, Length 1,650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4-201ENST00000287814 CYSTM1Q9H1C7 97 aa9.42□□□□□ -0.9
TIMP4-201ENST00000287814 TMEM258P61165 79 aa9.4□□□□□ -0.9
TIMP4-201ENST00000287814 S4R3F8 94 aa9.4□□□□□ -0.9
TIMP4-201ENST00000287814 H3BPC8 53 aa9.39□□□□□ -0.91
TIMP4-201ENST00000287814 LCA10Q71F78 164 aa9.39□□□□□ -0.91
TIMP4-201ENST00000287814 KRTAP9-3Q9BYQ3 159 aa9.39□□□□□ -0.91
TIMP4-201ENST00000287814 KRTAP9-6A0A140TA67 174 aa9.36□□□□□ -0.91
TIMP4-201ENST00000287814 KRTAP3-3Q9BYR6 98 aa9.32□□□□□ -0.92
TIMP4-201ENST00000287814 CRCT1Q9UGL9 99 aa9.32□□□□□ -0.92
TIMP4-201ENST00000287814 NDUFC1O43677 76 aa9.31□□□□□ -0.92
TIMP4-201ENST00000287814 H7BZZ5 65 aa9.3□□□□□ -0.92
TIMP4-201ENST00000287814 LCE2BO14633 110 aa9.29□□□□□ -0.92
TIMP4-201ENST00000287814 CSAG1Q6PB30 78 aa9.29□□□□□ -0.92
TIMP4-201ENST00000287814 USH2AO75445 5202 aa9.28□□□□□ -0.92
TIMP4-201ENST00000287814 RPS28P62857 69 aaKnown RBP9.26□□□□□ -0.93
TIMP4-201ENST00000287814 A8MUN3 132 aa9.22□□□□□ -0.93
TIMP4-201ENST00000287814 ATP5EP56381 51 aaPredicted RBP9.19□□□□□ -0.94
TIMP4-201ENST00000287814 SSPOA2VEC9 5147 aa9.13□□□□□ -0.95
TIMP4-201ENST00000287814 SERP1Q9Y6X1 66 aa9.12□□□□□ -0.95
TIMP4-201ENST00000287814 SPANXA2-OT1Q8N9U9 137 aa9.11□□□□□ -0.95
TIMP4-201ENST00000287814 DMAC1Q96GE9 116 aa9.11□□□□□ -0.95
TIMP4-201ENST00000287814 KRTAP19-1Q8IUB9 90 aa9.05□□□□□ -0.96
TIMP4-201ENST00000287814 H0YAA0 97 aa8.97□□□□□ -0.97
TIMP4-201ENST00000287814 SPRR2GQ9BYE4 73 aa8.94□□□□□ -0.98
TIMP4-201ENST00000287814 SMIM26A0A096LP01 95 aa8.94□□□□□ -0.98
TIMP4-201ENST00000287814 ACYP2P14621 99 aa8.93□□□□□ -0.98
TIMP4-201ENST00000287814 ADM2Q7Z4H4 148 aa8.91□□□□□ -0.98
TIMP4-201ENST00000287814 FCGBPQ9Y6R7 5405 aaPredicted RBP8.88□□□□□ -0.99
TIMP4-201ENST00000287814 COA5Q86WW8 74 aa8.87□□□□□ -0.99
TIMP4-201ENST00000287814 KRTAP19-6Q3LI70 58 aa8.86□□□□□ -0.99
TIMP4-201ENST00000287814 CRIPTQ9P021 101 aa8.85□□□□□ -0.99
TIMP4-201ENST00000287814 KRTAP19-8Q3LI54 63 aa8.85□□□□□ -0.99
TIMP4-201ENST00000287814 MT1BP07438 61 aa8.83□□□□□ -1
TIMP4-201ENST00000287814 P0C880 135 aa8.79□□□□□ -1
TIMP4-201ENST00000287814 CHKB-CPT1BH3BT56 60 aa8.78□□□□□ -1
TIMP4-201ENST00000287814 Q5VV11 94 aa8.78□□□□□ -1
TIMP4-201ENST00000287814 KRTAP3-2Q9BYR7 98 aa8.78□□□□□ -1
TIMP4-201ENST00000287814 SPTSSBQ8NFR3 76 aa8.71□□□□□ -1.02
TIMP4-201ENST00000287814 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.67□□□□□ -1.02
TIMP4-201ENST00000287814 Q1T7F1 81 aa8.66□□□□□ -1.02
TIMP4-201ENST00000287814 V9GYY9 64 aa8.65□□□□□ -1.03
TIMP4-201ENST00000287814 R4GN34 69 aa8.62□□□□□ -1.03
TIMP4-201ENST00000287814 M0QZ58 72 aa8.59□□□□□ -1.03
TIMP4-201ENST00000287814 SVIPQ8NHG7 77 aa8.59□□□□□ -1.03
TIMP4-201ENST00000287814 A6NN06 94 aa8.56□□□□□ -1.04
TIMP4-201ENST00000287814 MACF1Q9UPN3 7388 aaKnown RBP8.55□□□□□ -1.04
TIMP4-201ENST00000287814 KRTAP10-5P60370 271 aa8.53□□□□□ -1.04
TIMP4-201ENST00000287814 LINC01558Q9Y6Z2 57 aa8.47□□□□□ -1.05
TIMP4-201ENST00000287814 PSPHP1O15172 72 aa8.46□□□□□ -1.05
TIMP4-201ENST00000287814 KRTAP9-7A8MTY7 169 aa8.46□□□□□ -1.06
TIMP4-201ENST00000287814 LINC01554Q52M75 96 aa8.46□□□□□ -1.06
TIMP4-201ENST00000287814 PRO0628Q9UI54 55 aa8.43□□□□□ -1.06
TIMP4-201ENST00000287814 BRK1Q8WUW1 75 aa8.41□□□□□ -1.06
TIMP4-201ENST00000287814 PLAC4Q8WY50 150 aa8.41□□□□□ -1.06
TIMP4-201ENST00000287814 SYNE2Q8WXH0 6885 aaKnown RBP8.41□□□□□ -1.06
TIMP4-201ENST00000287814 PRR15LQ9BU68 103 aa8.4□□□□□ -1.06
TIMP4-201ENST00000287814 A0A1B0GU69 56 aa8.39□□□□□ -1.07
TIMP4-201ENST00000287814 SEC61GP60059 68 aa8.36□□□□□ -1.07
TIMP4-201ENST00000287814 KRTAP13-4Q3LI77 160 aa8.36□□□□□ -1.07
TIMP4-201ENST00000287814 MT1XP80297 61 aa8.35□□□□□ -1.07
TIMP4-201ENST00000287814 PRO2289Q9P1D8 64 aa8.26□□□□□ -1.09
TIMP4-201ENST00000287814 A6NED7 52 aa8.24□□□□□ -1.09
TIMP4-201ENST00000287814 KRTAP6-3Q3LI67 103 aa8.2□□□□□ -1.1
TIMP4-201ENST00000287814 A0A1B0GU33 70 aa8.18□□□□□ -1.1
TIMP4-201ENST00000287814 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
TIMP4-201ENST00000287814 CDC42SE1Q9NRR8 79 aa8.14□□□□□ -1.11
TIMP4-201ENST00000287814 UQCR11O14957 56 aa8.11□□□□□ -1.11
TIMP4-201ENST00000287814 A0A0D9SG42 100 aa8.09□□□□□ -1.11
TIMP4-201ENST00000287814 KMT2DO14686 5537 aa8.08□□□□□ -1.12
TIMP4-201ENST00000287814 A8MU10 97 aa8.05□□□□□ -1.12
TIMP4-201ENST00000287814 KRTAP12-2P59991 146 aa8.04□□□□□ -1.12
TIMP4-201ENST00000287814 MIR22HGQ0VDD5 57 aa8.02□□□□□ -1.13
TIMP4-201ENST00000287814 KRTAP10-7P60409 375 aaPredicted RBP7.99□□□□□ -1.13
TIMP4-201ENST00000287814 PMAIP1Q13794 54 aa7.98□□□□□ -1.13
TIMP4-201ENST00000287814 CAMK2N1Q7Z7J9 78 aa7.97□□□□□ -1.13
TIMP4-201ENST00000287814 KRTAP5-9P26371 169 aa7.96□□□□□ -1.13
TIMP4-201ENST00000287814 KRTAP12-1P59990 96 aa7.95□□□□□ -1.14
TIMP4-201ENST00000287814 MUC12Q9UKN1 5478 aa7.94□□□□□ -1.14
TIMP4-201ENST00000287814 SPINT4Q6UDR6 99 aa7.94□□□□□ -1.14
TIMP4-201ENST00000287814 KRTAP4-8A0A0G2JLE6 195 aa7.92□□□□□ -1.14
TIMP4-201ENST00000287814 KRTAP4-8Q9BYQ9 185 aa7.92□□□□□ -1.14
TIMP4-201ENST00000287814 KRTAP10-12P60413 245 aa7.92□□□□□ -1.14
TIMP4-201ENST00000287814 KRTAP8-1Q8IUC2 63 aa7.86□□□□□ -1.15
TIMP4-201ENST00000287814 NEBP20929 6669 aa7.83□□□□□ -1.16
TIMP4-201ENST00000287814 SPRR2FQ96RM1 72 aa7.8□□□□□ -1.16
TIMP4-201ENST00000287814 MDN1Q9NU22 5596 aa7.78□□□□□ -1.16
TIMP4-201ENST00000287814 KTN1-AS1Q86SY8 53 aa7.75□□□□□ -1.17
TIMP4-201ENST00000287814 K7ERS5 55 aa7.66□□□□□ -1.18
TIMP4-201ENST00000287814 SPRR2EP22531 72 aa7.6□□□□□ -1.19
TIMP4-201ENST00000287814 SPRR2BP35325 72 aa7.6□□□□□ -1.19
TIMP4-201ENST00000287814 SPRR2AP35326 72 aa7.6□□□□□ -1.19
TIMP4-201ENST00000287814 C10orf95Q9H7T3 257 aa7.59□□□□□ -1.19
TIMP4-201ENST00000287814 LCE1AQ5T7P2 110 aa7.58□□□□□ -1.2
TIMP4-201ENST00000287814 KRTAP19-7Q3SYF9 63 aa7.47□□□□□ -1.21
TIMP4-201ENST00000287814 TNP1P09430 55 aa7.43□□□□□ -1.22
TIMP4-201ENST00000287814 KRTAP20-1Q3LI63 56 aa7.42□□□□□ -1.22
TIMP4-201ENST00000287814 PRAC1Q96KF2 57 aa7.38□□□□□ -1.23
TIMP4-201ENST00000287814 MT1EP04732 61 aa7.38□□□□□ -1.23
TIMP4-201ENST00000287814 KRTAP19-5Q3LI72 72 aa7.36□□□□□ -1.23
TIMP4-201ENST00000287814 LCE3AQ5TA76 89 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms