RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 PCP4P48539 62 aa10.51□□□□□ -0.73
PDLIM3-203ENST00000284771 ACYP2P14621 99 aa10.5□□□□□ -0.73
PDLIM3-203ENST00000284771 KRTAP10-6P60371 365 aaPredicted RBP10.45□□□□□ -0.74
PDLIM3-203ENST00000284771 LORP23490 312 aaPredicted RBP10.44□□□□□ -0.74
PDLIM3-203ENST00000284771 CSAG1Q6PB30 78 aa10.38□□□□□ -0.75
PDLIM3-203ENST00000284771 KRTAP9-8Q9BYQ0 159 aa10.35□□□□□ -0.75
PDLIM3-203ENST00000284771 TMEM258P61165 79 aa10.34□□□□□ -0.75
PDLIM3-203ENST00000284771 COA5Q86WW8 74 aa10.31□□□□□ -0.76
PDLIM3-203ENST00000284771 CHKB-CPT1BH3BT56 60 aa10.28□□□□□ -0.76
PDLIM3-203ENST00000284771 ATP5EP56381 51 aaPredicted RBP10.27□□□□□ -0.77
PDLIM3-203ENST00000284771 MT2AP02795 61 aa10.25□□□□□ -0.77
PDLIM3-203ENST00000284771 MT1FP04733 61 aa10.19□□□□□ -0.78
PDLIM3-203ENST00000284771 SPTSSBQ8NFR3 76 aa10.14□□□□□ -0.79
PDLIM3-203ENST00000284771 H0YAA0 97 aa10.11□□□□□ -0.79
PDLIM3-203ENST00000284771 KRTAP10-10P60014 251 aa10.11□□□□□ -0.79
PDLIM3-203ENST00000284771 ADM2Q7Z4H4 148 aa10.06□□□□□ -0.8
PDLIM3-203ENST00000284771 KRTAP3-2Q9BYR7 98 aa10.04□□□□□ -0.8
PDLIM3-203ENST00000284771 SERP1Q9Y6X1 66 aa10.02□□□□□ -0.81
PDLIM3-203ENST00000284771 KRTAP9-3Q9BYQ3 159 aa9.99□□□□□ -0.81
PDLIM3-203ENST00000284771 P0C880 135 aa9.99□□□□□ -0.81
PDLIM3-203ENST00000284771 LCE2DQ5TA82 110 aaPredicted RBP9.87□□□□□ -0.83
PDLIM3-203ENST00000284771 KRTAP19-1Q8IUB9 90 aa9.85□□□□□ -0.83
PDLIM3-203ENST00000284771 LCE2BO14633 110 aa9.81□□□□□ -0.84
PDLIM3-203ENST00000284771 CRIPTQ9P021 101 aa9.8□□□□□ -0.84
PDLIM3-203ENST00000284771 RPS28P62857 69 aaKnown RBP9.8□□□□□ -0.84
PDLIM3-203ENST00000284771 SPRR2GQ9BYE4 73 aa9.8□□□□□ -0.84
PDLIM3-203ENST00000284771 SEC61GP60059 68 aa9.77□□□□□ -0.85
PDLIM3-203ENST00000284771 KRTAP9-2Q9BYQ4 174 aa9.77□□□□□ -0.85
PDLIM3-203ENST00000284771 LINC01558Q9Y6Z2 57 aa9.77□□□□□ -0.85
PDLIM3-203ENST00000284771 A0A1B0GU69 56 aa9.74□□□□□ -0.85
PDLIM3-203ENST00000284771 R4GN34 69 aa9.71□□□□□ -0.85
PDLIM3-203ENST00000284771 USH2AO75445 5202 aa9.69□□□□□ -0.86
PDLIM3-203ENST00000284771 SMIM26A0A096LP01 95 aa9.68□□□□□ -0.86
PDLIM3-203ENST00000284771 M0QZ58 72 aa9.68□□□□□ -0.86
PDLIM3-203ENST00000284771 KRTAP13-4Q3LI77 160 aa9.65□□□□□ -0.86
PDLIM3-203ENST00000284771 FSIP2Q5CZC0 6907 aa9.64□□□□□ -0.87
PDLIM3-203ENST00000284771 Q1T7F1 81 aa9.64□□□□□ -0.87
PDLIM3-203ENST00000284771 A0A1B0GU33 70 aa9.61□□□□□ -0.87
PDLIM3-203ENST00000284771 KRTAP19-8Q3LI54 63 aa9.61□□□□□ -0.87
PDLIM3-203ENST00000284771 PRR15LQ9BU68 103 aa9.59□□□□□ -0.87
PDLIM3-203ENST00000284771 V9GYY9 64 aa9.57□□□□□ -0.88
PDLIM3-203ENST00000284771 MT1BP07438 61 aa9.55□□□□□ -0.88
PDLIM3-203ENST00000284771 SPATA8Q6RVD6 105 aa9.54□□□□□ -0.88
PDLIM3-203ENST00000284771 LINC01554Q52M75 96 aa9.52□□□□□ -0.89
PDLIM3-203ENST00000284771 PSPHP1O15172 72 aa9.51□□□□□ -0.89
PDLIM3-203ENST00000284771 Q5VV11 94 aa9.49□□□□□ -0.89
PDLIM3-203ENST00000284771 SSPOA2VEC9 5147 aa9.49□□□□□ -0.89
PDLIM3-203ENST00000284771 A0A0D9SG42 100 aa9.36□□□□□ -0.91
PDLIM3-203ENST00000284771 UQCR11O14957 56 aa9.36□□□□□ -0.91
PDLIM3-203ENST00000284771 A8MU10 97 aa9.33□□□□□ -0.92
PDLIM3-203ENST00000284771 CRCT1Q9UGL9 99 aa9.33□□□□□ -0.92
PDLIM3-203ENST00000284771 A6NN06 94 aa9.32□□□□□ -0.92
PDLIM3-203ENST00000284771 PLAC4Q8WY50 150 aa9.29□□□□□ -0.92
PDLIM3-203ENST00000284771 KRTAP19-6Q3LI70 58 aa9.28□□□□□ -0.92
PDLIM3-203ENST00000284771 KRTAP12-1P59990 96 aa9.22□□□□□ -0.93
PDLIM3-203ENST00000284771 MIR22HGQ0VDD5 57 aa9.22□□□□□ -0.93
PDLIM3-203ENST00000284771 KRTAP12-2P59991 146 aa9.19□□□□□ -0.94
PDLIM3-203ENST00000284771 A6NED7 52 aa9.18□□□□□ -0.94
PDLIM3-203ENST00000284771 SPINT4Q6UDR6 99 aa9.16□□□□□ -0.94
PDLIM3-203ENST00000284771 KRTAP9-6A0A140TA67 174 aa9.16□□□□□ -0.94
PDLIM3-203ENST00000284771 MT1XP80297 61 aa9.13□□□□□ -0.95
PDLIM3-203ENST00000284771 KRTAP10-5P60370 271 aa9.13□□□□□ -0.95
PDLIM3-203ENST00000284771 FCGBPQ9Y6R7 5405 aaPredicted RBP9.12□□□□□ -0.95
PDLIM3-203ENST00000284771 CAMK2N1Q7Z7J9 78 aa9.02□□□□□ -0.97
PDLIM3-203ENST00000284771 PRO2289Q9P1D8 64 aa8.98□□□□□ -0.97
PDLIM3-203ENST00000284771 CDC42SE1Q9NRR8 79 aa8.95□□□□□ -0.98
PDLIM3-203ENST00000284771 K7ERS5 55 aa8.81□□□□□ -1
PDLIM3-203ENST00000284771 C10orf95Q9H7T3 257 aa8.78□□□□□ -1
PDLIM3-203ENST00000284771 KRTAP10-7P60409 375 aaPredicted RBP8.75□□□□□ -1.01
PDLIM3-203ENST00000284771 MACF1Q9UPN3 7388 aaKnown RBP8.74□□□□□ -1.01
PDLIM3-203ENST00000284771 BRK1Q8WUW1 75 aa8.74□□□□□ -1.01
PDLIM3-203ENST00000284771 KMT2DO14686 5537 aa8.67□□□□□ -1.02
PDLIM3-203ENST00000284771 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.66□□□□□ -1.02
PDLIM3-203ENST00000284771 KRTAP10-12P60413 245 aa8.65□□□□□ -1.02
PDLIM3-203ENST00000284771 KRTAP4-8A0A0G2JLE6 195 aa8.56□□□□□ -1.04
PDLIM3-203ENST00000284771 KRTAP4-8Q9BYQ9 185 aa8.56□□□□□ -1.04
PDLIM3-203ENST00000284771 SYNE2Q8WXH0 6885 aaKnown RBP8.56□□□□□ -1.04
PDLIM3-203ENST00000284771 TNP1P09430 55 aa8.5□□□□□ -1.05
PDLIM3-203ENST00000284771 ROMO1P60602 79 aa8.43□□□□□ -1.06
PDLIM3-203ENST00000284771 KRTAP25-1Q3LHN0 102 aa8.37□□□□□ -1.07
PDLIM3-203ENST00000284771 KRTAP8-1Q8IUC2 63 aa8.37□□□□□ -1.07
PDLIM3-203ENST00000284771 KRTAP9-7A8MTY7 169 aa8.33□□□□□ -1.08
PDLIM3-203ENST00000284771 KRTAP6-3Q3LI67 103 aa8.3□□□□□ -1.08
PDLIM3-203ENST00000284771 LCE3AQ5TA76 89 aa8.3□□□□□ -1.08
PDLIM3-203ENST00000284771 PRO0628Q9UI54 55 aa8.28□□□□□ -1.08
PDLIM3-203ENST00000284771 KRTAP5-9P26371 169 aa8.27□□□□□ -1.09
PDLIM3-203ENST00000284771 PMAIP1Q13794 54 aa8.25□□□□□ -1.09
PDLIM3-203ENST00000284771 SPRR2FQ96RM1 72 aa8.18□□□□□ -1.1
PDLIM3-203ENST00000284771 KRTAP19-7Q3SYF9 63 aa8.17□□□□□ -1.1
PDLIM3-203ENST00000284771 MUC12Q9UKN1 5478 aa8.16□□□□□ -1.1
PDLIM3-203ENST00000284771 KRTAP19-5Q3LI72 72 aa8.13□□□□□ -1.11
PDLIM3-203ENST00000284771 KRTAP23-1A1A580 65 aa8.1□□□□□ -1.11
PDLIM3-203ENST00000284771 MT1EP04732 61 aa8.02□□□□□ -1.13
PDLIM3-203ENST00000284771 MDN1Q9NU22 5596 aa8□□□□□ -1.13
PDLIM3-203ENST00000284771 KRTAP12-3P60328 96 aa7.96□□□□□ -1.13
PDLIM3-203ENST00000284771 PP632Q6XCG6 107 aa7.95□□□□□ -1.14
PDLIM3-203ENST00000284771 LCE1AQ5T7P2 110 aa7.92□□□□□ -1.14
PDLIM3-203ENST00000284771 SPRR2EP22531 72 aa7.86□□□□□ -1.15
PDLIM3-203ENST00000284771 SPRR2BP35325 72 aa7.86□□□□□ -1.15
PDLIM3-203ENST00000284771 SPRR2AP35326 72 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms