RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 A6NN06 94 aa6.92□□□□□ -1.3
CPSF6-201ENST00000266679 LRP2P98164 4655 aa6.89□□□□□ -1.31
CPSF6-201ENST00000266679 KRTAP3-1Q9BYR8 98 aa6.86□□□□□ -1.31
CPSF6-201ENST00000266679 KRTAP10-8P60410 259 aa6.85□□□□□ -1.31
CPSF6-201ENST00000266679 KTN1-AS1Q86SY8 53 aa6.85□□□□□ -1.31
CPSF6-201ENST00000266679 UQCR11O14957 56 aa6.85□□□□□ -1.31
CPSF6-201ENST00000266679 MIR22HGQ0VDD5 57 aa6.84□□□□□ -1.31
CPSF6-201ENST00000266679 SPATA8Q6RVD6 105 aa6.84□□□□□ -1.32
CPSF6-201ENST00000266679 SEC61GP60059 68 aa6.81□□□□□ -1.32
CPSF6-201ENST00000266679 RNF213Q63HN8 5207 aa6.78□□□□□ -1.32
CPSF6-201ENST00000266679 LPAP08519 4548 aa6.77□□□□□ -1.33
CPSF6-201ENST00000266679 COX6B2Q6YFQ2 88 aa6.76□□□□□ -1.33
CPSF6-201ENST00000266679 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
CPSF6-201ENST00000266679 XP32Q5T750 250 aa6.72□□□□□ -1.33
CPSF6-201ENST00000266679 H0YAA0 97 aa6.66□□□□□ -1.34
CPSF6-201ENST00000266679 RBM12B-AS1Q9P1G2 102 aa6.65□□□□□ -1.34
CPSF6-201ENST00000266679 A0A1B0GU33 70 aa6.65□□□□□ -1.35
CPSF6-201ENST00000266679 H1FX-AS1Q4G0G2 97 aa6.65□□□□□ -1.35
CPSF6-201ENST00000266679 PRAC1Q96KF2 57 aa6.63□□□□□ -1.35
CPSF6-201ENST00000266679 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
CPSF6-201ENST00000266679 KRTAP3-3Q9BYR6 98 aa6.57□□□□□ -1.36
CPSF6-201ENST00000266679 S4R3F8 94 aa6.56□□□□□ -1.36
CPSF6-201ENST00000266679 MUC2Q02817 5179 aa6.56□□□□□ -1.36
CPSF6-201ENST00000266679 KRTAP10-6P60371 365 aaPredicted RBP6.49□□□□□ -1.37
CPSF6-201ENST00000266679 TPRXLQ17RH7 258 aa6.49□□□□□ -1.37
CPSF6-201ENST00000266679 KRTAP3-2Q9BYR7 98 aa6.45□□□□□ -1.38
CPSF6-201ENST00000266679 CSAG1Q6PB30 78 aa6.44□□□□□ -1.38
CPSF6-201ENST00000266679 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
CPSF6-201ENST00000266679 K7ERS5 55 aa6.4□□□□□ -1.38
CPSF6-201ENST00000266679 P0C880 135 aa6.4□□□□□ -1.38
CPSF6-201ENST00000266679 A0A0D9SG42 100 aa6.39□□□□□ -1.39
CPSF6-201ENST00000266679 MUC17Q685J3 4493 aa6.37□□□□□ -1.39
CPSF6-201ENST00000266679 FAT4Q6V0I7 4981 aa6.35□□□□□ -1.39
CPSF6-201ENST00000266679 LINC01554Q52M75 96 aa6.32□□□□□ -1.4
CPSF6-201ENST00000266679 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
CPSF6-201ENST00000266679 SEC61BP60468 96 aaKnown RBP6.26□□□□□ -1.41
CPSF6-201ENST00000266679 CRIPTQ9P021 101 aa6.25□□□□□ -1.41
CPSF6-201ENST00000266679 ROMO1P60602 79 aa6.25□□□□□ -1.41
CPSF6-201ENST00000266679 KRTAP12-2P59991 146 aa6.21□□□□□ -1.42
CPSF6-201ENST00000266679 KRTAP4-1Q9BYQ7 146 aa6.2□□□□□ -1.42
CPSF6-201ENST00000266679 LCE2AQ5TA79 106 aaPredicted RBP6.19□□□□□ -1.42
CPSF6-201ENST00000266679 SPINT4Q6UDR6 99 aa6.18□□□□□ -1.42
CPSF6-201ENST00000266679 KRTAP12-1P59990 96 aa6.16□□□□□ -1.42
CPSF6-201ENST00000266679 M0QZ58 72 aa6.15□□□□□ -1.42
CPSF6-201ENST00000266679 KRTAP9-2Q9BYQ4 174 aa6.11□□□□□ -1.43
CPSF6-201ENST00000266679 R4GN34 69 aa6.06□□□□□ -1.44
CPSF6-201ENST00000266679 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
CPSF6-201ENST00000266679 KRTAP19-2Q3LHN2 52 aa6.05□□□□□ -1.44
CPSF6-201ENST00000266679 LORP23490 312 aaPredicted RBP6.03□□□□□ -1.44
CPSF6-201ENST00000266679 LCE2CQ5TA81 110 aa5.98□□□□□ -1.45
CPSF6-201ENST00000266679 H3BS24 57 aa5.97□□□□□ -1.45
CPSF6-201ENST00000266679 FSIP2Q5CZC0 6907 aa5.92□□□□□ -1.46
CPSF6-201ENST00000266679 FLGP20930 4061 aaPredicted RBP5.91□□□□□ -1.46
CPSF6-201ENST00000266679 KRTAP9-6A0A140TA67 174 aa5.91□□□□□ -1.46
CPSF6-201ENST00000266679 MT1HP80294 61 aa5.91□□□□□ -1.46
CPSF6-201ENST00000266679 LCE2DQ5TA82 110 aaPredicted RBP5.82□□□□□ -1.48
CPSF6-201ENST00000266679 M0R2T5 61 aa5.79□□□□□ -1.48
CPSF6-201ENST00000266679 CAMK2N1Q7Z7J9 78 aa5.76□□□□□ -1.49
CPSF6-201ENST00000266679 CRCT1Q9UGL9 99 aa5.74□□□□□ -1.49
CPSF6-201ENST00000266679 KRTAP15-1Q3LI76 137 aa5.67□□□□□ -1.5
CPSF6-201ENST00000266679 KRTAP9-8Q9BYQ0 159 aa5.57□□□□□ -1.52
CPSF6-201ENST00000266679 USH2AO75445 5202 aa5.56□□□□□ -1.52
CPSF6-201ENST00000266679 SSPOA2VEC9 5147 aa5.55□□□□□ -1.52
CPSF6-201ENST00000266679 SPRR2GQ9BYE4 73 aa5.54□□□□□ -1.52
CPSF6-201ENST00000266679 PP632Q6XCG6 107 aa5.54□□□□□ -1.52
CPSF6-201ENST00000266679 KRTAP19-1Q8IUB9 90 aa5.54□□□□□ -1.52
CPSF6-201ENST00000266679 TNP1P09430 55 aa5.51□□□□□ -1.53
CPSF6-201ENST00000266679 NDUFAF8A1L188 74 aa5.5□□□□□ -1.53
CPSF6-201ENST00000266679 MT2AP02795 61 aa5.5□□□□□ -1.53
CPSF6-201ENST00000266679 PLAC4Q8WY50 150 aa5.5□□□□□ -1.53
CPSF6-201ENST00000266679 MT1FP04733 61 aa5.49□□□□□ -1.53
CPSF6-201ENST00000266679 KRTAP10-10P60014 251 aa5.48□□□□□ -1.53
CPSF6-201ENST00000266679 LCE2BO14633 110 aa5.42□□□□□ -1.54
CPSF6-201ENST00000266679 FCGBPQ9Y6R7 5405 aaPredicted RBP5.4□□□□□ -1.54
CPSF6-201ENST00000266679 KRTAP9-3Q9BYQ3 159 aa5.39□□□□□ -1.55
CPSF6-201ENST00000266679 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.37□□□□□ -1.55
CPSF6-201ENST00000266679 KRTAP23-1A1A580 65 aa5.36□□□□□ -1.55
CPSF6-201ENST00000266679 KRTAP19-8Q3LI54 63 aa5.32□□□□□ -1.56
CPSF6-201ENST00000266679 KRTAP9-7A8MTY7 169 aa5.31□□□□□ -1.56
CPSF6-201ENST00000266679 MT1BP07438 61 aa5.28□□□□□ -1.56
CPSF6-201ENST00000266679 MACF1Q9UPN3 7388 aaKnown RBP5.26□□□□□ -1.57
CPSF6-201ENST00000266679 LCE3AQ5TA76 89 aa5.26□□□□□ -1.57
CPSF6-201ENST00000266679 SYNE2Q8WXH0 6885 aaKnown RBP5.25□□□□□ -1.57
CPSF6-201ENST00000266679 KRTAP10-5P60370 271 aa5.21□□□□□ -1.57
CPSF6-201ENST00000266679 MT1XP80297 61 aa5.21□□□□□ -1.58
CPSF6-201ENST00000266679 LUZP6Q538Z0 58 aa5.2□□□□□ -1.58
CPSF6-201ENST00000266679 KRTAP19-6Q3LI70 58 aa5.17□□□□□ -1.58
CPSF6-201ENST00000266679 SPRR5A0A1B0GTR4 108 aa5.12□□□□□ -1.59
CPSF6-201ENST00000266679 KRTAP10-12P60413 245 aa5.09□□□□□ -1.59
CPSF6-201ENST00000266679 KRTAP8-1Q8IUC2 63 aa5.08□□□□□ -1.6
CPSF6-201ENST00000266679 KRTAP10-7P60409 375 aaPredicted RBP5.07□□□□□ -1.6
CPSF6-201ENST00000266679 A0A0A0MQY5 61 aa5.03□□□□□ -1.6
CPSF6-201ENST00000266679 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
CPSF6-201ENST00000266679 KRTAP12-3P60328 96 aa4.99□□□□□ -1.61
CPSF6-201ENST00000266679 KRTAP6-3Q3LI67 103 aa4.95□□□□□ -1.62
CPSF6-201ENST00000266679 MUC12Q9UKN1 5478 aa4.92□□□□□ -1.62
CPSF6-201ENST00000266679 NEBP20929 6669 aa4.86□□□□□ -1.63
CPSF6-201ENST00000266679 KRTAP19-5Q3LI72 72 aa4.84□□□□□ -1.63
CPSF6-201ENST00000266679 KMT2DO14686 5537 aa4.81□□□□□ -1.64
CPSF6-201ENST00000266679 MDN1Q9NU22 5596 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms