RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 HERC2O95714 4834 aa4.85□□□□□ -1.63
MSH4-201ENST00000263187 KIAA1109Q2LD37 5005 aa4.84□□□□□ -1.63
MSH4-201ENST00000263187 LINC01554Q52M75 96 aa4.84□□□□□ -1.64
MSH4-201ENST00000263187 KRTAP10-4P60372 401 aaPredicted RBP4.83□□□□□ -1.64
MSH4-201ENST00000263187 FAT3Q8TDW7 4589 aa4.81□□□□□ -1.64
MSH4-201ENST00000263187 RPS29P62273 56 aaKnown RBP4.8□□□□□ -1.64
MSH4-201ENST00000263187 H1FX-AS1Q4G0G2 97 aa4.8□□□□□ -1.64
MSH4-201ENST00000263187 A0A0D9SG42 100 aa4.79□□□□□ -1.64
MSH4-201ENST00000263187 LPAP08519 4548 aa4.78□□□□□ -1.64
MSH4-201ENST00000263187 KRTAP17-1Q9BYP8 105 aa4.78□□□□□ -1.64
MSH4-201ENST00000263187 COX6B2Q6YFQ2 88 aa4.77□□□□□ -1.65
MSH4-201ENST00000263187 TNXBP22105 4242 aa4.77□□□□□ -1.65
MSH4-201ENST00000263187 KRTAP10-8P60410 259 aa4.75□□□□□ -1.65
MSH4-201ENST00000263187 ABCA13Q86UQ4 5058 aa4.73□□□□□ -1.65
MSH4-201ENST00000263187 Q5VSD8 79 aa4.71□□□□□ -1.66
MSH4-201ENST00000263187 KRTAP13-4Q3LI77 160 aa4.7□□□□□ -1.66
MSH4-201ENST00000263187 LRP2P98164 4655 aa4.7□□□□□ -1.66
MSH4-201ENST00000263187 PCLOQ9Y6V0 5065 aa4.68□□□□□ -1.66
MSH4-201ENST00000263187 KRTAP3-3Q9BYR6 98 aa4.68□□□□□ -1.66
MSH4-201ENST00000263187 K7ERS5 55 aa4.68□□□□□ -1.66
MSH4-201ENST00000263187 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
MSH4-201ENST00000263187 XP32Q5T750 250 aa4.67□□□□□ -1.66
MSH4-201ENST00000263187 P0C880 135 aa4.66□□□□□ -1.66
MSH4-201ENST00000263187 KRTAP10-6P60371 365 aaPredicted RBP4.66□□□□□ -1.66
MSH4-201ENST00000263187 KRTAP4-5Q9BYR2 181 aa4.65□□□□□ -1.66
MSH4-201ENST00000263187 S4R3F8 94 aa4.64□□□□□ -1.67
MSH4-201ENST00000263187 RPL37P61927 97 aaKnown RBP4.64□□□□□ -1.67
MSH4-201ENST00000263187 KRTAP3-2Q9BYR7 98 aa4.62□□□□□ -1.67
MSH4-201ENST00000263187 C10orf95Q9H7T3 257 aa4.61□□□□□ -1.67
MSH4-201ENST00000263187 SPINT4Q6UDR6 99 aa4.59□□□□□ -1.68
MSH4-201ENST00000263187 ROMO1P60602 79 aa4.58□□□□□ -1.68
MSH4-201ENST00000263187 KRTAP12-2P59991 146 aa4.55□□□□□ -1.68
MSH4-201ENST00000263187 TPRXLQ17RH7 258 aa4.54□□□□□ -1.68
MSH4-201ENST00000263187 MT1HL1P0DM35 61 aa4.53□□□□□ -1.68
MSH4-201ENST00000263187 HERC1Q15751 4861 aa4.49□□□□□ -1.69
MSH4-201ENST00000263187 MUC2Q02817 5179 aa4.49□□□□□ -1.69
MSH4-201ENST00000263187 KRTAP12-1P59990 96 aa4.45□□□□□ -1.7
MSH4-201ENST00000263187 HMCN2Q8NDA2 5059 aa4.43□□□□□ -1.7
MSH4-201ENST00000263187 J3QL48 77 aa4.43□□□□□ -1.7
MSH4-201ENST00000263187 M0QZ58 72 aa4.41□□□□□ -1.7
MSH4-201ENST00000263187 LORP23490 312 aaPredicted RBP4.37□□□□□ -1.71
MSH4-201ENST00000263187 R4GN34 69 aa4.37□□□□□ -1.71
MSH4-201ENST00000263187 NDUFAF8A1L188 74 aa4.36□□□□□ -1.71
MSH4-201ENST00000263187 MUC17Q685J3 4493 aa4.33□□□□□ -1.72
MSH4-201ENST00000263187 KRTAP4-1Q9BYQ7 146 aa4.32□□□□□ -1.72
MSH4-201ENST00000263187 LUZP6Q538Z0 58 aa4.31□□□□□ -1.72
MSH4-201ENST00000263187 KRTAP15-1Q3LI76 137 aa4.26□□□□□ -1.73
MSH4-201ENST00000263187 SEC61BP60468 96 aaKnown RBP4.24□□□□□ -1.73
MSH4-201ENST00000263187 FAT4Q6V0I7 4981 aa4.23□□□□□ -1.73
MSH4-201ENST00000263187 UBR4Q5T4S7 5183 aa4.2□□□□□ -1.74
MSH4-201ENST00000263187 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
MSH4-201ENST00000263187 RNF213Q63HN8 5207 aa4.15□□□□□ -1.75
MSH4-201ENST00000263187 PLAC4Q8WY50 150 aa4.11□□□□□ -1.75
MSH4-201ENST00000263187 KRTAP19-2Q3LHN2 52 aa4.1□□□□□ -1.75
MSH4-201ENST00000263187 FLGP20930 4061 aaPredicted RBP4.1□□□□□ -1.75
MSH4-201ENST00000263187 LOC100996750A0A140TA64 210 aa4.07□□□□□ -1.76
MSH4-201ENST00000263187 KRTAP4-6Q9BYQ5 205 aa4.07□□□□□ -1.76
MSH4-201ENST00000263187 M0R2T5 61 aa3.98□□□□□ -1.77
MSH4-201ENST00000263187 TNP1P09430 55 aa3.94□□□□□ -1.78
MSH4-201ENST00000263187 PP632Q6XCG6 107 aa3.91□□□□□ -1.78
MSH4-201ENST00000263187 LCE2CQ5TA81 110 aa3.9□□□□□ -1.78
MSH4-201ENST00000263187 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
MSH4-201ENST00000263187 LCE2AQ5TA79 106 aaPredicted RBP3.85□□□□□ -1.79
MSH4-201ENST00000263187 KRTAP10-10P60014 251 aa3.84□□□□□ -1.79
MSH4-201ENST00000263187 KRTAP19-1Q8IUB9 90 aa3.84□□□□□ -1.79
MSH4-201ENST00000263187 KRTAP9-2Q9BYQ4 174 aa3.83□□□□□ -1.8
MSH4-201ENST00000263187 LCE2DQ5TA82 110 aaPredicted RBP3.81□□□□□ -1.8
MSH4-201ENST00000263187 MT1HP80294 61 aa3.81□□□□□ -1.8
MSH4-201ENST00000263187 MT1FP04733 61 aa3.79□□□□□ -1.8
MSH4-201ENST00000263187 LCE3AQ5TA76 89 aa3.79□□□□□ -1.8
MSH4-201ENST00000263187 SPRR2GQ9BYE4 73 aa3.78□□□□□ -1.8
MSH4-201ENST00000263187 MT2AP02795 61 aa3.76□□□□□ -1.81
MSH4-201ENST00000263187 USH2AO75445 5202 aa3.75□□□□□ -1.81
MSH4-201ENST00000263187 KRTAP9-8Q9BYQ0 159 aa3.72□□□□□ -1.81
MSH4-201ENST00000263187 KMT2DO14686 5537 aa3.71□□□□□ -1.82
MSH4-201ENST00000263187 KRTAP23-1A1A580 65 aa3.66□□□□□ -1.82
MSH4-201ENST00000263187 SPRR5A0A1B0GTR4 108 aa3.66□□□□□ -1.82
MSH4-201ENST00000263187 KRTAP10-5P60370 271 aa3.63□□□□□ -1.83
MSH4-201ENST00000263187 MT1BP07438 61 aa3.62□□□□□ -1.83
MSH4-201ENST00000263187 MT1XP80297 61 aa3.62□□□□□ -1.83
MSH4-201ENST00000263187 KRTAP10-7P60409 375 aaPredicted RBP3.61□□□□□ -1.83
MSH4-201ENST00000263187 KRTAP5-3Q6L8H2 238 aa3.59□□□□□ -1.83
MSH4-201ENST00000263187 CRCT1Q9UGL9 99 aa3.59□□□□□ -1.84
MSH4-201ENST00000263187 KRTAP10-12P60413 245 aa3.58□□□□□ -1.84
MSH4-201ENST00000263187 KRTAP12-3P60328 96 aa3.57□□□□□ -1.84
MSH4-201ENST00000263187 KRTAP19-8Q3LI54 63 aa3.57□□□□□ -1.84
MSH4-201ENST00000263187 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
MSH4-201ENST00000263187 KRTAP9-3Q9BYQ3 159 aa3.53□□□□□ -1.84
MSH4-201ENST00000263187 FSIP2Q5CZC0 6907 aa3.52□□□□□ -1.85
MSH4-201ENST00000263187 LCE2BO14633 110 aa3.46□□□□□ -1.86
MSH4-201ENST00000263187 KRTAP4-8A0A0G2JLE6 195 aa3.45□□□□□ -1.86
MSH4-201ENST00000263187 KRTAP19-5Q3LI72 72 aa3.45□□□□□ -1.86
MSH4-201ENST00000263187 KRTAP4-8Q9BYQ9 185 aa3.45□□□□□ -1.86
MSH4-201ENST00000263187 PRO2289Q9P1D8 64 aa3.44□□□□□ -1.86
MSH4-201ENST00000263187 SSPOA2VEC9 5147 aa3.42□□□□□ -1.86
MSH4-201ENST00000263187 KRTAP9-7A8MTY7 169 aa3.4□□□□□ -1.87
MSH4-201ENST00000263187 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.38□□□□□ -1.87
MSH4-201ENST00000263187 KRTAP4-7Q9BYR0 210 aa3.36□□□□□ -1.87
MSH4-201ENST00000263187 LCE3CQ5T5A8 94 aa3.33□□□□□ -1.88
MSH4-201ENST00000263187 KRTAP19-6Q3LI70 58 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms