RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 RPS29P62273 56 aaKnown RBP6.56□□□□□ -1.36
MSH2-201ENST00000233146 DNAH5Q8TE73 4624 aa6.52□□□□□ -1.37
MSH2-201ENST00000233146 HYDINQ4G0P3 5121 aa6.5□□□□□ -1.37
MSH2-201ENST00000233146 VPS13BQ7Z7G8 4022 aa6.47□□□□□ -1.37
MSH2-201ENST00000233146 KMT2CQ8NEZ4 4911 aaKnown RBP6.47□□□□□ -1.37
MSH2-201ENST00000233146 KRTAP10-2P60368 255 aa6.42□□□□□ -1.38
MSH2-201ENST00000233146 SACSQ9NZJ4 4579 aa6.36□□□□□ -1.39
MSH2-201ENST00000233146 M0QZ58 72 aa6.35□□□□□ -1.39
MSH2-201ENST00000233146 KRTAP10-1P60331 282 aa6.35□□□□□ -1.39
MSH2-201ENST00000233146 SMR3BP02814 79 aaPredicted RBP6.33□□□□□ -1.4
MSH2-201ENST00000233146 PKHD1P08F94 4074 aa6.31□□□□□ -1.4
MSH2-201ENST00000233146 PKD1P98161 4303 aa6.29□□□□□ -1.4
MSH2-201ENST00000233146 MYCBP2O75592 4640 aa6.29□□□□□ -1.4
MSH2-201ENST00000233146 J3QL48 77 aa6.28□□□□□ -1.4
MSH2-201ENST00000233146 PKHD1L1Q86WI1 4243 aa6.28□□□□□ -1.4
MSH2-201ENST00000233146 FAT2Q9NYQ8 4349 aa6.28□□□□□ -1.4
MSH2-201ENST00000233146 KRTAP10-8P60410 259 aa6.28□□□□□ -1.4
MSH2-201ENST00000233146 CAMK2N1Q7Z7J9 78 aa6.27□□□□□ -1.41
MSH2-201ENST00000233146 APOBP04114 4563 aaKnown RBP6.24□□□□□ -1.41
MSH2-201ENST00000233146 KRTAP21-3Q3LHN1 58 aa6.23□□□□□ -1.41
MSH2-201ENST00000233146 RYR3Q15413 4870 aa6.23□□□□□ -1.41
MSH2-201ENST00000233146 FAT1Q14517 4588 aa6.22□□□□□ -1.41
MSH2-201ENST00000233146 LRP1Q07954 4544 aaKnown RBP6.17□□□□□ -1.42
MSH2-201ENST00000233146 PP632Q6XCG6 107 aa6.16□□□□□ -1.42
MSH2-201ENST00000233146 PRO2289Q9P1D8 64 aa6.15□□□□□ -1.42
MSH2-201ENST00000233146 KIAA1109Q2LD37 5005 aa6.13□□□□□ -1.43
MSH2-201ENST00000233146 HSPG2P98160 4391 aa6.1□□□□□ -1.43
MSH2-201ENST00000233146 EPPK1P58107 5090 aaKnown RBP6.09□□□□□ -1.43
MSH2-201ENST00000233146 RYR2Q92736 4967 aa6.08□□□□□ -1.44
MSH2-201ENST00000233146 SPRR5A0A1B0GTR4 108 aa6.07□□□□□ -1.44
MSH2-201ENST00000233146 DYNC1H1Q14204 4646 aaKnown RBP6.06□□□□□ -1.44
MSH2-201ENST00000233146 TNXBP22105 4242 aa6.05□□□□□ -1.44
MSH2-201ENST00000233146 FAT3Q8TDW7 4589 aa6.02□□□□□ -1.45
MSH2-201ENST00000233146 R4GN34 69 aa6□□□□□ -1.45
MSH2-201ENST00000233146 RYR1P21817 5038 aa5.92□□□□□ -1.46
MSH2-201ENST00000233146 KRTAP10-4P60372 401 aaPredicted RBP5.92□□□□□ -1.46
MSH2-201ENST00000233146 INE1O15225 51 aa5.9□□□□□ -1.46
MSH2-201ENST00000233146 KRTAP17-1Q9BYP8 105 aa5.87□□□□□ -1.47
MSH2-201ENST00000233146 LORP23490 312 aaPredicted RBP5.84□□□□□ -1.47
MSH2-201ENST00000233146 A0A1B0GVY2 172 aa5.83□□□□□ -1.48
MSH2-201ENST00000233146 Q5VSD8 79 aa5.83□□□□□ -1.48
MSH2-201ENST00000233146 KRTAP4-5Q9BYR2 181 aa5.83□□□□□ -1.48
MSH2-201ENST00000233146 KRTAP23-1A1A580 65 aa5.79□□□□□ -1.48
MSH2-201ENST00000233146 LPAP08519 4548 aa5.77□□□□□ -1.49
MSH2-201ENST00000233146 ABCA13Q86UQ4 5058 aa5.71□□□□□ -1.49
MSH2-201ENST00000233146 HERC2O95714 4834 aa5.7□□□□□ -1.5
MSH2-201ENST00000233146 TNP1P09430 55 aa5.68□□□□□ -1.5
MSH2-201ENST00000233146 HERC1Q15751 4861 aa5.65□□□□□ -1.5
MSH2-201ENST00000233146 PCLOQ9Y6V0 5065 aa5.62□□□□□ -1.51
MSH2-201ENST00000233146 LRP2P98164 4655 aa5.6□□□□□ -1.51
MSH2-201ENST00000233146 MUC2Q02817 5179 aa5.59□□□□□ -1.51
MSH2-201ENST00000233146 RNF213Q63HN8 5207 aa5.52□□□□□ -1.53
MSH2-201ENST00000233146 BIRC6Q9NR09 4857 aa5.51□□□□□ -1.53
MSH2-201ENST00000233146 UBR4Q5T4S7 5183 aa5.43□□□□□ -1.54
MSH2-201ENST00000233146 MT1HL1P0DM35 61 aa5.42□□□□□ -1.54
MSH2-201ENST00000233146 FLGP20930 4061 aaPredicted RBP5.39□□□□□ -1.55
MSH2-201ENST00000233146 MUC17Q685J3 4493 aa5.37□□□□□ -1.55
MSH2-201ENST00000233146 FAT4Q6V0I7 4981 aa5.31□□□□□ -1.56
MSH2-201ENST00000233146 LCE3AQ5TA76 89 aa5.31□□□□□ -1.56
MSH2-201ENST00000233146 KRTAP19-2Q3LHN2 52 aa5.24□□□□□ -1.57
MSH2-201ENST00000233146 KRTAP4-1Q9BYQ7 146 aa5.2□□□□□ -1.58
MSH2-201ENST00000233146 KRTAP8-1Q8IUC2 63 aa5.19□□□□□ -1.58
MSH2-201ENST00000233146 KRTAP10-10P60014 251 aa5.18□□□□□ -1.58
MSH2-201ENST00000233146 KRTAP10-12P60413 245 aa5.15□□□□□ -1.58
MSH2-201ENST00000233146 HMCN2Q8NDA2 5059 aa5.12□□□□□ -1.59
MSH2-201ENST00000233146 FSIP2Q5CZC0 6907 aa5.06□□□□□ -1.6
MSH2-201ENST00000233146 KRTAP12-3P60328 96 aa5.01□□□□□ -1.61
MSH2-201ENST00000233146 SPRR2GQ9BYE4 73 aa5□□□□□ -1.61
MSH2-201ENST00000233146 M0R2T5 61 aa4.98□□□□□ -1.61
MSH2-201ENST00000233146 KRTAP19-1Q8IUB9 90 aa4.95□□□□□ -1.62
MSH2-201ENST00000233146 KRTAP10-5P60370 271 aa4.94□□□□□ -1.62
MSH2-201ENST00000233146 USH2AO75445 5202 aa4.8□□□□□ -1.64
MSH2-201ENST00000233146 KRTAP2-3P0C7H8 128 aa4.8□□□□□ -1.64
MSH2-201ENST00000233146 KRTAP2-4Q9BYR9 128 aa4.8□□□□□ -1.64
MSH2-201ENST00000233146 KRTAP2-1Q9BYU5 128 aa4.8□□□□□ -1.64
MSH2-201ENST00000233146 LCE3CQ5T5A8 94 aa4.78□□□□□ -1.64
MSH2-201ENST00000233146 MT1XP80297 61 aa4.72□□□□□ -1.65
MSH2-201ENST00000233146 KRTAP9-6A8MVA2 160 aa4.7□□□□□ -1.66
MSH2-201ENST00000233146 KRTAP10-7P60409 375 aaPredicted RBP4.66□□□□□ -1.66
MSH2-201ENST00000233146 KRTAP19-8Q3LI54 63 aa4.66□□□□□ -1.66
MSH2-201ENST00000233146 LCE2CQ5TA81 110 aa4.61□□□□□ -1.67
MSH2-201ENST00000233146 MT1HP80294 61 aa4.6□□□□□ -1.67
MSH2-201ENST00000233146 MT1BP07438 61 aa4.58□□□□□ -1.68
MSH2-201ENST00000233146 KRTAP19-5Q3LI72 72 aa4.57□□□□□ -1.68
MSH2-201ENST00000233146 MT1FP04733 61 aa4.56□□□□□ -1.68
MSH2-201ENST00000233146 MT2AP02795 61 aa4.52□□□□□ -1.69
MSH2-201ENST00000233146 KMT2DO14686 5537 aa4.45□□□□□ -1.7
MSH2-201ENST00000233146 KRTAP9-8Q9BYQ0 159 aa4.43□□□□□ -1.7
MSH2-201ENST00000233146 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
MSH2-201ENST00000233146 KRTAP4-7Q9BYR0 210 aa4.35□□□□□ -1.71
MSH2-201ENST00000233146 KRTAP19-4Q3LI73 84 aa4.27□□□□□ -1.73
MSH2-201ENST00000233146 LCE2AQ5TA79 106 aaPredicted RBP4.26□□□□□ -1.73
MSH2-201ENST00000233146 SSPOA2VEC9 5147 aa4.25□□□□□ -1.73
MSH2-201ENST00000233146 LCE2BO14633 110 aa4.23□□□□□ -1.73
MSH2-201ENST00000233146 KRTAP19-7Q3SYF9 63 aa4.2□□□□□ -1.74
MSH2-201ENST00000233146 KRTAP4-8A0A0G2JLE6 195 aa4.2□□□□□ -1.74
MSH2-201ENST00000233146 KRTAP4-8Q9BYQ9 185 aa4.2□□□□□ -1.74
MSH2-201ENST00000233146 KRTAP9-3Q9BYQ3 159 aa4.2□□□□□ -1.74
MSH2-201ENST00000233146 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
MSH2-201ENST00000233146 DSTQ03001 7570 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms