RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 ABCA13Q86UQ4 5058 aa13.52□□□□□ -0.24
RUNDC3A-201ENST00000225441 C9orf92A6NGG3 77 aa13.38□□□□□ -0.27
RUNDC3A-201ENST00000225441 RBM12B-AS1Q9P1G2 102 aa13.37□□□□□ -0.27
RUNDC3A-201ENST00000225441 DMBT1Q9UGM3 2413 aaPredicted RBP13.34□□□□□ -0.27
RUNDC3A-201ENST00000225441 J3QL48 77 aa13.3□□□□□ -0.28
RUNDC3A-201ENST00000225441 KRTAP3-1Q9BYR8 98 aa13.25□□□□□ -0.29
RUNDC3A-201ENST00000225441 COX6B2Q6YFQ2 88 aa13.18□□□□□ -0.3
RUNDC3A-201ENST00000225441 A0A1B0GU33 70 aa13.07□□□□□ -0.32
RUNDC3A-201ENST00000225441 H1FX-AS1Q4G0G2 97 aa13.04□□□□□ -0.32
RUNDC3A-201ENST00000225441 H0YAA0 97 aa13.02□□□□□ -0.33
RUNDC3A-201ENST00000225441 PRAC1Q96KF2 57 aa12.99□□□□□ -0.33
RUNDC3A-201ENST00000225441 RPL37P61927 97 aaKnown RBP12.96□□□□□ -0.33
RUNDC3A-201ENST00000225441 TPRXLQ17RH7 258 aa12.95□□□□□ -0.34
RUNDC3A-201ENST00000225441 ADM2Q7Z4H4 148 aa12.94□□□□□ -0.34
RUNDC3A-201ENST00000225441 HERC1Q15751 4861 aa12.92□□□□□ -0.34
RUNDC3A-201ENST00000225441 XP32Q5T750 250 aa12.9□□□□□ -0.34
RUNDC3A-201ENST00000225441 K7ERS5 55 aa12.77□□□□□ -0.37
RUNDC3A-201ENST00000225441 LINC01554Q52M75 96 aa12.77□□□□□ -0.37
RUNDC3A-201ENST00000225441 CSAG1Q6PB30 78 aa12.72□□□□□ -0.37
RUNDC3A-201ENST00000225441 KRTAP3-3Q9BYR6 98 aa12.72□□□□□ -0.37
RUNDC3A-201ENST00000225441 LPAP08519 4548 aa12.7□□□□□ -0.38
RUNDC3A-201ENST00000225441 S4R3F8 94 aa12.67□□□□□ -0.38
RUNDC3A-201ENST00000225441 KRTAP10-6P60371 365 aaPredicted RBP12.62□□□□□ -0.39
RUNDC3A-201ENST00000225441 LRP2P98164 4655 aa12.61□□□□□ -0.39
RUNDC3A-201ENST00000225441 HMCN2Q8NDA2 5059 aa12.6□□□□□ -0.39
RUNDC3A-201ENST00000225441 KRTAP3-2Q9BYR7 98 aa12.55□□□□□ -0.4
RUNDC3A-201ENST00000225441 KRTAP25-1Q3LHN0 102 aa12.52□□□□□ -0.41
RUNDC3A-201ENST00000225441 SEC61BP60468 96 aaKnown RBP12.51□□□□□ -0.41
RUNDC3A-201ENST00000225441 ROMO1P60602 79 aa12.39□□□□□ -0.43
RUNDC3A-201ENST00000225441 KRTAP13-4Q3LI77 160 aa12.37□□□□□ -0.43
RUNDC3A-201ENST00000225441 MUC17Q685J3 4493 aa12.32□□□□□ -0.44
RUNDC3A-201ENST00000225441 P0C880 135 aa12.28□□□□□ -0.44
RUNDC3A-201ENST00000225441 KRTAP4-1Q9BYQ7 146 aa12.25□□□□□ -0.45
RUNDC3A-201ENST00000225441 A0A0D9SG42 100 aa12.23□□□□□ -0.45
RUNDC3A-201ENST00000225441 M0QZ58 72 aa12.18□□□□□ -0.46
RUNDC3A-201ENST00000225441 UBR4Q5T4S7 5183 aa12.16□□□□□ -0.46
RUNDC3A-201ENST00000225441 KRTAP12-1P59990 96 aa12.01□□□□□ -0.49
RUNDC3A-201ENST00000225441 KRTAP12-2P59991 146 aa12.01□□□□□ -0.49
RUNDC3A-201ENST00000225441 CRIPTQ9P021 101 aa11.99□□□□□ -0.49
RUNDC3A-201ENST00000225441 MUC2Q02817 5179 aa11.92□□□□□ -0.5
RUNDC3A-201ENST00000225441 RNF213Q63HN8 5207 aa11.91□□□□□ -0.5
RUNDC3A-201ENST00000225441 KRTAP19-2Q3LHN2 52 aa11.9□□□□□ -0.5
RUNDC3A-201ENST00000225441 SPINT4Q6UDR6 99 aa11.89□□□□□ -0.51
RUNDC3A-201ENST00000225441 R4GN34 69 aa11.72□□□□□ -0.53
RUNDC3A-201ENST00000225441 LCE2CQ5TA81 110 aa11.69□□□□□ -0.54
RUNDC3A-201ENST00000225441 C10orf95Q9H7T3 257 aa11.67□□□□□ -0.54
RUNDC3A-201ENST00000225441 FLGP20930 4061 aaPredicted RBP11.54□□□□□ -0.56
RUNDC3A-201ENST00000225441 FAT4Q6V0I7 4981 aa11.49□□□□□ -0.57
RUNDC3A-201ENST00000225441 MT1HP80294 61 aa11.46□□□□□ -0.58
RUNDC3A-201ENST00000225441 H3BS24 57 aa11.41□□□□□ -0.58
RUNDC3A-201ENST00000225441 LORP23490 312 aaPredicted RBP11.39□□□□□ -0.59
RUNDC3A-201ENST00000225441 KRTAP15-1Q3LI76 137 aa11.37□□□□□ -0.59
RUNDC3A-201ENST00000225441 M0R2T5 61 aa11.33□□□□□ -0.6
RUNDC3A-201ENST00000225441 PP632Q6XCG6 107 aa11.16□□□□□ -0.62
RUNDC3A-201ENST00000225441 LCE2AQ5TA79 106 aaPredicted RBP11.14□□□□□ -0.63
RUNDC3A-201ENST00000225441 CAMK2N1Q7Z7J9 78 aa11.11□□□□□ -0.63
RUNDC3A-201ENST00000225441 KRTAP9-8Q9BYQ0 159 aa11.01□□□□□ -0.65
RUNDC3A-201ENST00000225441 MT2AP02795 61 aa10.98□□□□□ -0.65
RUNDC3A-201ENST00000225441 NDUFAF8A1L188 74 aa10.94□□□□□ -0.66
RUNDC3A-201ENST00000225441 PLAC4Q8WY50 150 aa10.93□□□□□ -0.66
RUNDC3A-201ENST00000225441 KRTAP23-1A1A580 65 aa10.91□□□□□ -0.66
RUNDC3A-201ENST00000225441 MT1FP04733 61 aa10.91□□□□□ -0.66
RUNDC3A-201ENST00000225441 KRTAP10-10P60014 251 aa10.87□□□□□ -0.67
RUNDC3A-201ENST00000225441 TNP1P09430 55 aa10.79□□□□□ -0.68
RUNDC3A-201ENST00000225441 SPRR2GQ9BYE4 73 aa10.73□□□□□ -0.69
RUNDC3A-201ENST00000225441 KRTAP9-2Q9BYQ4 174 aa10.7□□□□□ -0.7
RUNDC3A-201ENST00000225441 KRTAP19-1Q8IUB9 90 aa10.65□□□□□ -0.7
RUNDC3A-201ENST00000225441 KRTAP9-3Q9BYQ3 159 aa10.63□□□□□ -0.71
RUNDC3A-201ENST00000225441 LUZP6Q538Z0 58 aa10.48□□□□□ -0.73
RUNDC3A-201ENST00000225441 KRTAP19-8Q3LI54 63 aa10.42□□□□□ -0.74
RUNDC3A-201ENST00000225441 LCE2BO14633 110 aa10.35□□□□□ -0.75
RUNDC3A-201ENST00000225441 LCE2DQ5TA82 110 aaPredicted RBP10.35□□□□□ -0.75
RUNDC3A-201ENST00000225441 KRTAP9-6A0A140TA67 174 aa10.33□□□□□ -0.76
RUNDC3A-201ENST00000225441 SPRR5A0A1B0GTR4 108 aa10.3□□□□□ -0.76
RUNDC3A-201ENST00000225441 MT1BP07438 61 aa10.29□□□□□ -0.76
RUNDC3A-201ENST00000225441 FSIP2Q5CZC0 6907 aa10.21□□□□□ -0.77
RUNDC3A-201ENST00000225441 USH2AO75445 5202 aa10.1□□□□□ -0.79
RUNDC3A-201ENST00000225441 CRCT1Q9UGL9 99 aa10.09□□□□□ -0.79
RUNDC3A-201ENST00000225441 LCE3AQ5TA76 89 aa10.07□□□□□ -0.8
RUNDC3A-201ENST00000225441 KRTAP8-1Q8IUC2 63 aa10□□□□□ -0.81
RUNDC3A-201ENST00000225441 A0A0A0MQY5 61 aa9.96□□□□□ -0.82
RUNDC3A-201ENST00000225441 KRTAP10-5P60370 271 aa9.94□□□□□ -0.82
RUNDC3A-201ENST00000225441 MT1XP80297 61 aa9.92□□□□□ -0.82
RUNDC3A-201ENST00000225441 PRO2289Q9P1D8 64 aa9.82□□□□□ -0.84
RUNDC3A-201ENST00000225441 SSPOA2VEC9 5147 aa9.8□□□□□ -0.84
RUNDC3A-201ENST00000225441 KRTAP10-12P60413 245 aa9.77□□□□□ -0.85
RUNDC3A-201ENST00000225441 KRTAP19-6Q3LI70 58 aa9.77□□□□□ -0.85
RUNDC3A-201ENST00000225441 KRTAP12-3P60328 96 aa9.68□□□□□ -0.86
RUNDC3A-201ENST00000225441 KRTAP10-7P60409 375 aaPredicted RBP9.55□□□□□ -0.88
RUNDC3A-201ENST00000225441 FCGBPQ9Y6R7 5405 aaPredicted RBP9.45□□□□□ -0.9
RUNDC3A-201ENST00000225441 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.42□□□□□ -0.9
RUNDC3A-201ENST00000225441 KRTAP9-7A8MTY7 169 aa9.28□□□□□ -0.92
RUNDC3A-201ENST00000225441 KRTAP19-5Q3LI72 72 aa9.21□□□□□ -0.94
RUNDC3A-201ENST00000225441 KRTAP4-8A0A0G2JLE6 195 aa9.17□□□□□ -0.94
RUNDC3A-201ENST00000225441 KRTAP4-8Q9BYQ9 185 aa9.17□□□□□ -0.94
RUNDC3A-201ENST00000225441 INE1O15225 51 aa9.14□□□□□ -0.95
RUNDC3A-201ENST00000225441 LCE3CQ5T5A8 94 aa9.13□□□□□ -0.95
RUNDC3A-201ENST00000225441 MACF1Q9UPN3 7388 aaKnown RBP9.13□□□□□ -0.95
RUNDC3A-201ENST00000225441 KRTAP19-4Q3LI73 84 aa9.1□□□□□ -0.95
RUNDC3A-201ENST00000225441 KMT2DO14686 5537 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms