RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 DNAH7Q8WXX0 4024 aa2.73□□□□□ -1.97
VPS13D-201ENST00000011700 ANK2Q01484 3957 aa2.73□□□□□ -1.97
VPS13D-201ENST00000011700 HECTD4Q9Y4D8 3996 aa2.72□□□□□ -1.97
VPS13D-201ENST00000011700 KRTAP12-3P60328 96 aa2.71□□□□□ -1.98
VPS13D-201ENST00000011700 LCE2DQ5TA82 110 aaPredicted RBP2.67□□□□□ -1.98
VPS13D-201ENST00000011700 LCE2CQ5TA81 110 aa2.65□□□□□ -1.99
VPS13D-201ENST00000011700 FRAS1Q86XX4 4008 aa2.62□□□□□ -1.99
VPS13D-201ENST00000011700 KMT2AQ03164 3969 aa2.6□□□□□ -1.99
VPS13D-201ENST00000011700 VPS13BQ7Z7G8 4022 aa2.59□□□□□ -2
VPS13D-201ENST00000011700 LCE2BO14633 110 aa2.57□□□□□ -2
VPS13D-201ENST00000011700 DNAH1Q9P2D7 4330 aa2.56□□□□□ -2
VPS13D-201ENST00000011700 MT1HL1P0DM35 61 aa2.54□□□□□ -2
VPS13D-201ENST00000011700 KRTAP8-1Q8IUC2 63 aa2.54□□□□□ -2
VPS13D-201ENST00000011700 DNAH6Q9C0G6 4158 aa2.53□□□□□ -2
VPS13D-201ENST00000011700 LCE2AQ5TA79 106 aaPredicted RBP2.51□□□□□ -2.01
VPS13D-201ENST00000011700 MT3P25713 68 aa2.5□□□□□ -2.01
VPS13D-201ENST00000011700 FLGP20930 4061 aaPredicted RBP2.5□□□□□ -2.01
VPS13D-201ENST00000011700 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
VPS13D-201ENST00000011700 DNAH2Q9P225 4427 aa2.48□□□□□ -2.01
VPS13D-201ENST00000011700 LCE3AQ5TA76 89 aa2.48□□□□□ -2.01
VPS13D-201ENST00000011700 SPRR2GQ9BYE4 73 aa2.48□□□□□ -2.01
VPS13D-201ENST00000011700 KRTAP10-4P60372 401 aaPredicted RBP2.47□□□□□ -2.01
VPS13D-201ENST00000011700 HUWE1Q7Z6Z7 4374 aaKnown RBP2.45□□□□□ -2.02
VPS13D-201ENST00000011700 PRKDCP78527 4128 aaKnown RBP2.43□□□□□ -2.02
VPS13D-201ENST00000011700 KRTAP10-5P60370 271 aa2.42□□□□□ -2.02
VPS13D-201ENST00000011700 LORP23490 312 aaPredicted RBP2.42□□□□□ -2.02
VPS13D-201ENST00000011700 LCE3CQ5T5A8 94 aa2.38□□□□□ -2.03
VPS13D-201ENST00000011700 CRCT1Q9UGL9 99 aa2.37□□□□□ -2.03
VPS13D-201ENST00000011700 ANK3Q12955 4377 aaKnown RBP2.36□□□□□ -2.03
VPS13D-201ENST00000011700 KRTAP12-4P60329 112 aa2.34□□□□□ -2.04
VPS13D-201ENST00000011700 DNAH10Q8IVF4 4471 aa2.29□□□□□ -2.04
VPS13D-201ENST00000011700 PKHD1P08F94 4074 aa2.27□□□□□ -2.05
VPS13D-201ENST00000011700 SPRR2FQ96RM1 72 aa2.26□□□□□ -2.05
VPS13D-201ENST00000011700 MT1HP80294 61 aa2.23□□□□□ -2.05
VPS13D-201ENST00000011700 FAT2Q9NYQ8 4349 aa2.23□□□□□ -2.05
VPS13D-201ENST00000011700 DYNC2H1Q8NCM8 4307 aaKnown RBP2.22□□□□□ -2.05
VPS13D-201ENST00000011700 SPRR5A0A1B0GTR4 108 aa2.21□□□□□ -2.06
VPS13D-201ENST00000011700 KRTAP19-8Q3LI54 63 aa2.21□□□□□ -2.06
VPS13D-201ENST00000011700 KRTAP19-5Q3LI72 72 aa2.21□□□□□ -2.06
VPS13D-201ENST00000011700 MT2AP02795 61 aa2.19□□□□□ -2.06
VPS13D-201ENST00000011700 SPRR2EP22531 72 aa2.17□□□□□ -2.06
VPS13D-201ENST00000011700 SPRR2BP35325 72 aa2.17□□□□□ -2.06
VPS13D-201ENST00000011700 SPRR2AP35326 72 aa2.17□□□□□ -2.06
VPS13D-201ENST00000011700 PKHD1L1Q86WI1 4243 aa2.17□□□□□ -2.06
VPS13D-201ENST00000011700 SPRR2DP22532 72 aa2.16□□□□□ -2.06
VPS13D-201ENST00000011700 MT1GP13640 62 aa2.16□□□□□ -2.06
VPS13D-201ENST00000011700 VPS13DQ5THJ4 4388 aa2.14□□□□□ -2.07
VPS13D-201ENST00000011700 KRTAP4-5Q9BYR2 181 aa2.12□□□□□ -2.07
VPS13D-201ENST00000011700 MT1FP04733 61 aa2.12□□□□□ -2.07
VPS13D-201ENST00000011700 LCE3DQ9BYE3 92 aa2.11□□□□□ -2.07
VPS13D-201ENST00000011700 DNAH9Q9NYC9 4486 aa2.11□□□□□ -2.07
VPS13D-201ENST00000011700 DNAH11Q96DT5 4516 aa2.1□□□□□ -2.07
VPS13D-201ENST00000011700 LCE3EQ5T5B0 92 aa2.1□□□□□ -2.07
VPS13D-201ENST00000011700 MT1LQ93083 61 aa2.09□□□□□ -2.07
VPS13D-201ENST00000011700 DNAH17Q9UFH2 4485 aa2.09□□□□□ -2.08
VPS13D-201ENST00000011700 LRP1Q07954 4544 aaKnown RBP2.07□□□□□ -2.08
VPS13D-201ENST00000011700 KRTAP19-1Q8IUB9 90 aa2.05□□□□□ -2.08
VPS13D-201ENST00000011700 DNAH8Q96JB1 4490 aa2.05□□□□□ -2.08
VPS13D-201ENST00000011700 HSPG2P98160 4391 aa2.05□□□□□ -2.08
VPS13D-201ENST00000011700 STARD9Q9P2P6 4700 aa2.04□□□□□ -2.08
VPS13D-201ENST00000011700 DNAH5Q8TE73 4624 aa2.04□□□□□ -2.08
VPS13D-201ENST00000011700 MT1XP80297 61 aa2.03□□□□□ -2.08
VPS13D-201ENST00000011700 KRTAP4-1Q9BYQ7 146 aa2.03□□□□□ -2.08
VPS13D-201ENST00000011700 PLECQ15149 4684 aaKnown RBP2.03□□□□□ -2.09
VPS13D-201ENST00000011700 LCE3BQ5TA77 95 aa2.02□□□□□ -2.09
VPS13D-201ENST00000011700 PKD1P98161 4303 aa2.01□□□□□ -2.09
VPS13D-201ENST00000011700 MT1EP04732 61 aa2□□□□□ -2.09
VPS13D-201ENST00000011700 TNXBP22105 4242 aa1.99□□□□□ -2.09
VPS13D-201ENST00000011700 KRTAP19-3Q7Z4W3 81 aa1.99□□□□□ -2.09
VPS13D-201ENST00000011700 RYR1P21817 5038 aa1.95□□□□□ -2.1
VPS13D-201ENST00000011700 APOBP04114 4563 aaKnown RBP1.95□□□□□ -2.1
VPS13D-201ENST00000011700 KRTAP9-8Q9BYQ0 159 aa1.93□□□□□ -2.1
VPS13D-201ENST00000011700 DNHD1Q96M86 4753 aa1.92□□□□□ -2.1
VPS13D-201ENST00000011700 MT1MQ8N339 61 aa1.92□□□□□ -2.1
VPS13D-201ENST00000011700 MT1BP07438 61 aa1.9□□□□□ -2.11
VPS13D-201ENST00000011700 DYNC1H1Q14204 4646 aaKnown RBP1.9□□□□□ -2.11
VPS13D-201ENST00000011700 LRP1BQ9NZR2 4599 aa1.9□□□□□ -2.11
VPS13D-201ENST00000011700 LCE1AQ5T7P2 110 aa1.9□□□□□ -2.11
VPS13D-201ENST00000011700 MT1AP04731 61 aa1.89□□□□□ -2.11
VPS13D-201ENST00000011700 KRTAP9-3Q9BYQ3 159 aa1.88□□□□□ -2.11
VPS13D-201ENST00000011700 LCE5AQ5TCM9 118 aa1.88□□□□□ -2.11
VPS13D-201ENST00000011700 KRTAP19-6Q3LI70 58 aa1.86□□□□□ -2.11
VPS13D-201ENST00000011700 SACSQ9NZJ4 4579 aa1.86□□□□□ -2.11
VPS13D-201ENST00000011700 LCE4AQ5TA78 99 aa1.85□□□□□ -2.11
VPS13D-201ENST00000011700 KRTAP20-1Q3LI63 56 aa1.85□□□□□ -2.11
VPS13D-201ENST00000011700 KRTAP2-3P0C7H8 128 aa1.82□□□□□ -2.12
VPS13D-201ENST00000011700 KRTAP2-4Q9BYR9 128 aa1.82□□□□□ -2.12
VPS13D-201ENST00000011700 RYR3Q15413 4870 aa1.81□□□□□ -2.12
VPS13D-201ENST00000011700 KRTAP9-2Q9BYQ4 174 aa1.81□□□□□ -2.12
VPS13D-201ENST00000011700 RYR2Q92736 4967 aa1.81□□□□□ -2.12
VPS13D-201ENST00000011700 PRM1P04553 51 aa1.8□□□□□ -2.12
VPS13D-201ENST00000011700 KRTAP9-6A0A140TA67 174 aa1.8□□□□□ -2.12
VPS13D-201ENST00000011700 FAT1Q14517 4588 aa1.8□□□□□ -2.12
VPS13D-201ENST00000011700 LCE1FQ5T754 118 aa1.8□□□□□ -2.12
VPS13D-201ENST00000011700 KRTAP9-4Q9BYQ2 154 aa1.8□□□□□ -2.12
VPS13D-201ENST00000011700 KRTAP2-1Q9BYU5 128 aa1.8□□□□□ -2.12
VPS13D-201ENST00000011700 KRTAP9-7A8MTY7 169 aa1.78□□□□□ -2.12
VPS13D-201ENST00000011700 SYNE1Q8NF91 8797 aaKnown RBP1.78□□□□□ -2.13
VPS13D-201ENST00000011700 KIAA1109Q2LD37 5005 aa1.77□□□□□ -2.13
VPS13D-201ENST00000011700 FAT3Q8TDW7 4589 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms