RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LINC00310P59036 64 aa2.99□□□□□ -1.93
SCN1A-218ENST00000640036 SMCPP49901 116 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-218ENST00000640036 NDUFAF8A1L188 74 aa2.98□□□□□ -1.93
SCN1A-218ENST00000640036 OCR1Q9BZK8 76 aa2.98□□□□□ -1.93
SCN1A-218ENST00000640036 CFAP47Q6ZTR5 3102 aa2.98□□□□□ -1.93
SCN1A-218ENST00000640036 ASPMQ8IZT6 3477 aa2.98□□□□□ -1.93
SCN1A-218ENST00000640036 VWFP04275 2813 aa2.98□□□□□ -1.93
SCN1A-218ENST00000640036 RPS29P62273 56 aaKnown RBP2.98□□□□□ -1.93
SCN1A-218ENST00000640036 SPATA8Q6RVD6 105 aa2.97□□□□□ -1.93
SCN1A-218ENST00000640036 A0A087X002 238 aa2.97□□□□□ -1.93
SCN1A-218ENST00000640036 PDZD2O15018 2839 aa2.97□□□□□ -1.93
SCN1A-218ENST00000640036 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
SCN1A-218ENST00000640036 LAMA5O15230 3695 aa2.95□□□□□ -1.94
SCN1A-218ENST00000640036 MXRA5Q9NR99 2828 aa2.95□□□□□ -1.94
SCN1A-218ENST00000640036 DMDP11532 3685 aa2.95□□□□□ -1.94
SCN1A-218ENST00000640036 ADGRG4Q8IZF6 3080 aa2.95□□□□□ -1.94
SCN1A-218ENST00000640036 KRTAP29-1A8MX34 341 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-218ENST00000640036 SRRM2Q9UQ35 2752 aaKnown RBP2.95□□□□□ -1.94
SCN1A-218ENST00000640036 Q6ZRN7 208 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-218ENST00000640036 ZANQ9Y493 2812 aa2.94□□□□□ -1.94
SCN1A-218ENST00000640036 CELSR1Q9NYQ6 3014 aa2.94□□□□□ -1.94
SCN1A-218ENST00000640036 SPRR1BP22528 89 aa2.93□□□□□ -1.94
SCN1A-218ENST00000640036 SPRR1AP35321 89 aa2.93□□□□□ -1.94
SCN1A-218ENST00000640036 PANO1I0J062 215 aa2.92□□□□□ -1.94
SCN1A-218ENST00000640036 FBN3Q75N90 2809 aa2.92□□□□□ -1.94
SCN1A-218ENST00000640036 RELNP78509 3460 aa2.92□□□□□ -1.94
SCN1A-218ENST00000640036 MMP24-AS1A0A0U1RRL7 71 aa2.91□□□□□ -1.94
SCN1A-218ENST00000640036 TNP1P09430 55 aa2.91□□□□□ -1.94
SCN1A-218ENST00000640036 SPTBN5Q9NRC6 3674 aaKnown RBP2.91□□□□□ -1.94
SCN1A-218ENST00000640036 P0C880 135 aa2.9□□□□□ -1.95
SCN1A-218ENST00000640036 NOTCH2NLQ7Z3S9 236 aa2.89□□□□□ -1.95
SCN1A-218ENST00000640036 ZFHX3Q15911 3703 aa2.89□□□□□ -1.95
SCN1A-218ENST00000640036 TGP01266 2768 aa2.89□□□□□ -1.95
SCN1A-218ENST00000640036 KRTAP26-1Q6PEX3 210 aa2.89□□□□□ -1.95
SCN1A-218ENST00000640036 Q5W150 140 aa2.88□□□□□ -1.95
SCN1A-218ENST00000640036 TPRXLQ17RH7 258 aa2.87□□□□□ -1.95
SCN1A-218ENST00000640036 KRTAP10-10P60014 251 aa2.87□□□□□ -1.95
SCN1A-218ENST00000640036 Q5VV11 94 aa2.87□□□□□ -1.95
SCN1A-218ENST00000640036 PRO2289Q9P1D8 64 aa2.87□□□□□ -1.95
SCN1A-218ENST00000640036 ADM2Q7Z4H4 148 aa2.86□□□□□ -1.95
SCN1A-218ENST00000640036 SPENQ96T58 3664 aaKnown RBP2.85□□□□□ -1.95
SCN1A-218ENST00000640036 FBN2P35556 2912 aa2.85□□□□□ -1.95
SCN1A-218ENST00000640036 NBPF19A0A087WUL8 3843 aa2.85□□□□□ -1.95
SCN1A-218ENST00000640036 Q8NDZ9 215 aa2.85□□□□□ -1.95
SCN1A-218ENST00000640036 CSMD1Q96PZ7 3565 aa2.84□□□□□ -1.96
SCN1A-218ENST00000640036 A8MUU9 505 aa2.84□□□□□ -1.96
SCN1A-218ENST00000640036 LINC00472Q9H8W2 130 aa2.83□□□□□ -1.96
SCN1A-218ENST00000640036 KRTAP25-1Q3LHN0 102 aa2.83□□□□□ -1.96
SCN1A-218ENST00000640036 COL7A1Q02388 2944 aa2.82□□□□□ -1.96
SCN1A-218ENST00000640036 Q5XG85 94 aa2.81□□□□□ -1.96
SCN1A-218ENST00000640036 LOC400499M0QZD8 3231 aa2.8□□□□□ -1.96
SCN1A-218ENST00000640036 A0A1B0GVY2 172 aa2.79□□□□□ -1.96
SCN1A-218ENST00000640036 KRTAP13-2Q52LG2 175 aa2.79□□□□□ -1.96
SCN1A-218ENST00000640036 KRTAP10-8P60410 259 aa2.79□□□□□ -1.96
SCN1A-218ENST00000640036 PRAC1Q96KF2 57 aa2.78□□□□□ -1.97
SCN1A-218ENST00000640036 ZFHX4Q86UP3 3567 aa2.77□□□□□ -1.97
SCN1A-218ENST00000640036 SMG1Q96Q15 3661 aaKnown RBP2.77□□□□□ -1.97
SCN1A-218ENST00000640036 XP32Q5T750 250 aa2.76□□□□□ -1.97
SCN1A-218ENST00000640036 KRTAP4-16G5E9R7 235 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-218ENST00000640036 C10orf95Q9H7T3 257 aa2.74□□□□□ -1.97
SCN1A-218ENST00000640036 FBN1P35555 2871 aaKnown RBP2.72□□□□□ -1.97
SCN1A-218ENST00000640036 KRTAP11-1Q8IUC1 163 aa2.72□□□□□ -1.97
SCN1A-218ENST00000640036 OTOGQ6ZRI0 2925 aa2.71□□□□□ -1.98
SCN1A-218ENST00000640036 KRTAP13-1Q8IUC0 172 aa2.7□□□□□ -1.98
SCN1A-218ENST00000640036 KRTAP13-3Q3SY46 172 aa2.69□□□□□ -1.98
SCN1A-218ENST00000640036 HRNRQ86YZ3 2850 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-218ENST00000640036 KRTAP1-4P0C5Y4 121 aa2.68□□□□□ -1.98
SCN1A-218ENST00000640036 A6NN06 94 aa2.68□□□□□ -1.98
SCN1A-218ENST00000640036 VPS13CQ709C8 3753 aa2.66□□□□□ -1.98
SCN1A-218ENST00000640036 MEGF8Q7Z7M0 2845 aa2.66□□□□□ -1.98
SCN1A-218ENST00000640036 CSMD2Q7Z408 3487 aa2.66□□□□□ -1.98
SCN1A-218ENST00000640036 MUC3AQ02505 3323 aa2.65□□□□□ -1.98
SCN1A-218ENST00000640036 A8MU10 97 aa2.65□□□□□ -1.99
SCN1A-218ENST00000640036 CUBNO60494 3623 aa2.64□□□□□ -1.99
SCN1A-218ENST00000640036 SVEP1Q4LDE5 3571 aa2.63□□□□□ -1.99
SCN1A-218ENST00000640036 KRTAP7-1Q8IUC3 87 aa2.62□□□□□ -1.99
SCN1A-218ENST00000640036 AKAP9Q99996 3911 aa2.61□□□□□ -1.99
SCN1A-218ENST00000640036 CYSTM1Q9H1C7 97 aa2.6□□□□□ -1.99
SCN1A-218ENST00000640036 INE1O15225 51 aa2.58□□□□□ -2
SCN1A-218ENST00000640036 KRTAP17-1Q9BYP8 105 aa2.55□□□□□ -2
SCN1A-218ENST00000640036 LCE2DQ5TA82 110 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-218ENST00000640036 KRTAP4-5Q9BYR2 181 aa2.5□□□□□ -2.01
SCN1A-218ENST00000640036 BSNQ9UPA5 3926 aa2.49□□□□□ -2.01
SCN1A-218ENST00000640036 MT1HL1P0DM35 61 aa2.47□□□□□ -2.01
SCN1A-218ENST00000640036 H0YAA0 97 aa2.46□□□□□ -2.02
SCN1A-218ENST00000640036 KRTAP13-4Q3LI77 160 aa2.45□□□□□ -2.02
SCN1A-218ENST00000640036 TRRAPQ9Y4A5 3859 aa2.44□□□□□ -2.02
SCN1A-218ENST00000640036 CSMD3Q7Z407 3707 aa2.43□□□□□ -2.02
SCN1A-218ENST00000640036 LORP23490 312 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-218ENST00000640036 KRTAP12-2P59991 146 aa2.39□□□□□ -2.03
SCN1A-218ENST00000640036 KRTAP15-1Q3LI76 137 aa2.37□□□□□ -2.03
SCN1A-218ENST00000640036 KRTAP23-1A1A580 65 aa2.34□□□□□ -2.03
SCN1A-218ENST00000640036 LYSTQ99698 3801 aa2.33□□□□□ -2.04
SCN1A-218ENST00000640036 KRTAP8-1Q8IUC2 63 aa2.33□□□□□ -2.04
SCN1A-218ENST00000640036 FRAS1Q86XX4 4008 aa2.33□□□□□ -2.04
SCN1A-218ENST00000640036 DNAH1Q9P2D7 4330 aa2.29□□□□□ -2.04
SCN1A-218ENST00000640036 CRCT1Q9UGL9 99 aa2.29□□□□□ -2.04
SCN1A-218ENST00000640036 ANK3Q12955 4377 aaKnown RBP2.29□□□□□ -2.04
SCN1A-218ENST00000640036 KRTAP10-12P60413 245 aa2.28□□□□□ -2.05
SCN1A-218ENST00000640036 ZNF469Q96JG9 3925 aaPredicted RBP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms