RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 J3QL48 77 aa10.74□□□□□ -0.69
CLN3-258ENST00000637184 PRR15Q8IV56 129 aa10.73□□□□□ -0.69
CLN3-258ENST00000637184 RETNLBQ9BQ08 111 aa10.72□□□□□ -0.69
CLN3-258ENST00000637184 A0A087WVE0 104 aa10.71□□□□□ -0.69
CLN3-258ENST00000637184 A0A1B0GVX0 72 aa10.7□□□□□ -0.7
CLN3-258ENST00000637184 IGHV6-1A0A0B4J1U7 121 aa10.69□□□□□ -0.7
CLN3-258ENST00000637184 PCLOQ9Y6V0 5065 aa10.65□□□□□ -0.7
CLN3-258ENST00000637184 HCG22E2RYF7 251 aa10.62□□□□□ -0.71
CLN3-258ENST00000637184 C8orf17Q9NRJ1 99 aa10.62□□□□□ -0.71
CLN3-258ENST00000637184 FP248Q71RG6 208 aaPredicted RBP10.61□□□□□ -0.71
CLN3-258ENST00000637184 MMP24-AS1A0A0U1RRL7 71 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 C8orf87E5RJ46 101 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 FAM236AA0A1B0GUQ0 79 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 FAM236BA0A1B0GV22 79 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 LINC00313P59037 77 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 NOTCH2NLQ7Z3S9 236 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 WFDC13Q8IUB5 93 aa10.6□□□□□ -0.71
CLN3-258ENST00000637184 CASC2Q6XLA1 102 aa10.57□□□□□ -0.72
CLN3-258ENST00000637184 hDV103S1A0JD37 113 aa10.57□□□□□ -0.72
CLN3-258ENST00000637184 IGLV7-46A0A075B6I9 117 aa10.54□□□□□ -0.72
CLN3-258ENST00000637184 PRR4Q16378 134 aa10.54□□□□□ -0.72
CLN3-258ENST00000637184 SCGB1A1P11684 91 aa10.53□□□□□ -0.72
CLN3-258ENST00000637184 C9orf92A6NGG3 77 aa10.5□□□□□ -0.73
CLN3-258ENST00000637184 TMEM254Q8TBM7 123 aa10.5□□□□□ -0.73
CLN3-258ENST00000637184 MRPL34Q9BQ48 92 aaKnown RBP10.49□□□□□ -0.73
CLN3-258ENST00000637184 KRTAP16-1A8MUX0 517 aa10.46□□□□□ -0.74
CLN3-258ENST00000637184 ATOX1O00244 68 aa10.46□□□□□ -0.74
CLN3-258ENST00000637184 NDUFS5O43920 106 aa10.42□□□□□ -0.74
CLN3-258ENST00000637184 KRTAP13-3Q3SY46 172 aa10.42□□□□□ -0.74
CLN3-258ENST00000637184 Q8N9P0 234 aaPredicted RBP10.4□□□□□ -0.74
CLN3-258ENST00000637184 SMIM20Q8N5G0 67 aa10.39□□□□□ -0.75
CLN3-258ENST00000637184 TPRXLQ17RH7 258 aa10.38□□□□□ -0.75
CLN3-258ENST00000637184 OCR1Q9BZK8 76 aa10.38□□□□□ -0.75
CLN3-258ENST00000637184 PCP4P48539 62 aa10.37□□□□□ -0.75
CLN3-258ENST00000637184 ANAPC13Q9BS18 74 aa10.35□□□□□ -0.75
CLN3-258ENST00000637184 TP53AIP1Q9HCN2 124 aa10.35□□□□□ -0.75
CLN3-258ENST00000637184 TRAV7A0A075B6U4 112 aa10.34□□□□□ -0.75
CLN3-258ENST00000637184 C20orf166-AS1Q96NR2 134 aa10.34□□□□□ -0.75
CLN3-258ENST00000637184 HERC1Q15751 4861 aa10.32□□□□□ -0.76
CLN3-258ENST00000637184 A8MUU9 505 aa10.32□□□□□ -0.76
CLN3-258ENST00000637184 UQCRQO14949 82 aa10.31□□□□□ -0.76
CLN3-258ENST00000637184 XP32Q5T750 250 aa10.31□□□□□ -0.76
CLN3-258ENST00000637184 SERP2Q8N6R1 65 aa10.31□□□□□ -0.76
CLN3-258ENST00000637184 Q75L30 129 aa10.29□□□□□ -0.76
CLN3-258ENST00000637184 LPAP08519 4548 aa10.24□□□□□ -0.77
CLN3-258ENST00000637184 TRAV22A0A0B4J277 110 aa10.24□□□□□ -0.77
CLN3-258ENST00000637184 COX7CP15954 63 aa10.24□□□□□ -0.77
CLN3-258ENST00000637184 C5orf47Q569G3 176 aa10.24□□□□□ -0.77
CLN3-258ENST00000637184 RPL37P61927 97 aaKnown RBP10.23□□□□□ -0.77
CLN3-258ENST00000637184 Q5W150 140 aa10.23□□□□□ -0.77
CLN3-258ENST00000637184 ZCCHC13Q8WW36 166 aaKnown RBP10.21□□□□□ -0.77
CLN3-258ENST00000637184 H0Y9P7 68 aa10.21□□□□□ -0.78
CLN3-258ENST00000637184 MP68P56378 58 aa10.2□□□□□ -0.78
CLN3-258ENST00000637184 ATP11AUNQ6ZP68 121 aa10.18□□□□□ -0.78
CLN3-258ENST00000637184 HMCN2Q8NDA2 5059 aa10.16□□□□□ -0.78
CLN3-258ENST00000637184 LRP2P98164 4655 aa10.15□□□□□ -0.78
CLN3-258ENST00000637184 C20orf197Q8N268 126 aa10.14□□□□□ -0.79
CLN3-258ENST00000637184 LINC00208Q96KT6 92 aa10.14□□□□□ -0.79
CLN3-258ENST00000637184 H3BPC8 53 aa10.12□□□□□ -0.79
CLN3-258ENST00000637184 CCDC179H3BU77 68 aa10.11□□□□□ -0.79
CLN3-258ENST00000637184 C1orf64Q8NEQ6 169 aa10.11□□□□□ -0.79
CLN3-258ENST00000637184 A0A0U1RQV1 116 aa10.09□□□□□ -0.79
CLN3-258ENST00000637184 SNURFQ9Y675 71 aa10.09□□□□□ -0.79
CLN3-258ENST00000637184 LOC101927531A0A1B0GV80 90 aa10.07□□□□□ -0.8
CLN3-258ENST00000637184 PCOTHQ58A44 107 aa10.06□□□□□ -0.8
CLN3-258ENST00000637184 KLKP1Q107X0 134 aa10.06□□□□□ -0.8
CLN3-258ENST00000637184 SEC61BP60468 96 aaKnown RBP10.05□□□□□ -0.8
CLN3-258ENST00000637184 IGKV2D-30A0A075B6S6 120 aa10.04□□□□□ -0.8
CLN3-258ENST00000637184 IGKV2-30P06310 120 aa10.04□□□□□ -0.8
CLN3-258ENST00000637184 C7orf65Q6ZTY9 151 aa10.01□□□□□ -0.81
CLN3-258ENST00000637184 CYP4F30PQ9H0H9 118 aa10.01□□□□□ -0.81
CLN3-258ENST00000637184 SPINK7P58062 85 aa9.98□□□□□ -0.81
CLN3-258ENST00000637184 CYSTM1Q9H1C7 97 aa9.96□□□□□ -0.81
CLN3-258ENST00000637184 NDUFC1O43677 76 aa9.93□□□□□ -0.82
CLN3-258ENST00000637184 MUC17Q685J3 4493 aa9.9□□□□□ -0.83
CLN3-258ENST00000637184 H7BZZ5 65 aa9.89□□□□□ -0.83
CLN3-258ENST00000637184 HRES1P13985 223 aa9.84□□□□□ -0.83
CLN3-258ENST00000637184 KRTAP4-1Q9BYQ7 146 aa9.79□□□□□ -0.84
CLN3-258ENST00000637184 C4orf26Q17RF5 130 aa9.78□□□□□ -0.84
CLN3-258ENST00000637184 SPANXA2-OT1Q8N9U9 137 aa9.78□□□□□ -0.84
CLN3-258ENST00000637184 TMEM258P61165 79 aa9.75□□□□□ -0.85
CLN3-258ENST00000637184 UBR4Q5T4S7 5183 aa9.73□□□□□ -0.85
CLN3-258ENST00000637184 FAM236DA0A1B0GTK5 79 aa9.7□□□□□ -0.86
CLN3-258ENST00000637184 FAM236CP0DP71 79 aa9.7□□□□□ -0.86
CLN3-258ENST00000637184 RBM12B-AS1Q9P1G2 102 aa9.69□□□□□ -0.86
CLN3-258ENST00000637184 COX6B2Q6YFQ2 88 aa9.68□□□□□ -0.86
CLN3-258ENST00000637184 MPLKIPQ8TAP9 179 aa9.68□□□□□ -0.86
CLN3-258ENST00000637184 ATP5EP56381 51 aaPredicted RBP9.68□□□□□ -0.86
CLN3-258ENST00000637184 MUC2Q02817 5179 aa9.66□□□□□ -0.86
CLN3-258ENST00000637184 DMAC1Q96GE9 116 aa9.65□□□□□ -0.87
CLN3-258ENST00000637184 RNF213Q63HN8 5207 aa9.64□□□□□ -0.87
CLN3-258ENST00000637184 A8MUN3 132 aa9.63□□□□□ -0.87
CLN3-258ENST00000637184 KRTAP3-1Q9BYR8 98 aa9.62□□□□□ -0.87
CLN3-258ENST00000637184 ACYP2P14621 99 aa9.59□□□□□ -0.87
CLN3-258ENST00000637184 H1FX-AS1Q4G0G2 97 aa9.52□□□□□ -0.89
CLN3-258ENST00000637184 KRTAP19-2Q3LHN2 52 aa9.48□□□□□ -0.89
CLN3-258ENST00000637184 COA5Q86WW8 74 aa9.48□□□□□ -0.89
CLN3-258ENST00000637184 CHKB-CPT1BH3BT56 60 aa9.45□□□□□ -0.9
CLN3-258ENST00000637184 SERP1Q9Y6X1 66 aa9.45□□□□□ -0.9
CLN3-258ENST00000637184 S4R3F8 94 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms