RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZNF861PO60384 105 aa6.69□□□□□ -1.34
CLN3-244ENST00000636147 TRRAPQ9Y4A5 3859 aa6.69□□□□□ -1.34
CLN3-244ENST00000636147 A0A087X002 238 aa6.69□□□□□ -1.34
CLN3-244ENST00000636147 NOTCH2NLQ7Z3S9 236 aa6.69□□□□□ -1.34
CLN3-244ENST00000636147 FAM229AH3BQW9 127 aa6.68□□□□□ -1.34
CLN3-244ENST00000636147 FLG2Q5D862 2391 aaPredicted RBP6.66□□□□□ -1.34
CLN3-244ENST00000636147 APLNQ9ULZ1 77 aa6.65□□□□□ -1.35
CLN3-244ENST00000636147 A6NN06 94 aa6.64□□□□□ -1.35
CLN3-244ENST00000636147 ZNF469Q96JG9 3925 aaPredicted RBP6.63□□□□□ -1.35
CLN3-244ENST00000636147 A0A087WTM6 91 aa6.63□□□□□ -1.35
CLN3-244ENST00000636147 C1orf134Q5TEV5 83 aa6.63□□□□□ -1.35
CLN3-244ENST00000636147 Q5W150 140 aa6.62□□□□□ -1.35
CLN3-244ENST00000636147 K7ERS5 55 aa6.61□□□□□ -1.35
CLN3-244ENST00000636147 Q6ZR54 194 aa6.6□□□□□ -1.35
CLN3-244ENST00000636147 ADM2Q7Z4H4 148 aa6.6□□□□□ -1.35
CLN3-244ENST00000636147 Q96NJ1 140 aa6.6□□□□□ -1.35
CLN3-244ENST00000636147 Q8N1X5 172 aa6.6□□□□□ -1.35
CLN3-244ENST00000636147 WWC2-AS2Q96NR7 200 aa6.6□□□□□ -1.35
CLN3-244ENST00000636147 LINC01554Q52M75 96 aa6.58□□□□□ -1.36
CLN3-244ENST00000636147 IGLV7-43P04211 117 aa6.57□□□□□ -1.36
CLN3-244ENST00000636147 SSBP3-AS1Q7Z2R9 100 aa6.56□□□□□ -1.36
CLN3-244ENST00000636147 COL7A1Q02388 2944 aa6.55□□□□□ -1.36
CLN3-244ENST00000636147 CSAG1Q6PB30 78 aa6.54□□□□□ -1.36
CLN3-244ENST00000636147 AKAP9Q99996 3911 aa6.52□□□□□ -1.37
CLN3-244ENST00000636147 TGP01266 2768 aa6.52□□□□□ -1.37
CLN3-244ENST00000636147 TYMSOSQ8TAI1 123 aa6.5□□□□□ -1.37
CLN3-244ENST00000636147 PLA2G1BP04054 148 aaKnown RBP6.49□□□□□ -1.37
CLN3-244ENST00000636147 DMAC1Q96GE9 116 aa6.48□□□□□ -1.37
CLN3-244ENST00000636147 CSMD3Q7Z407 3707 aa6.47□□□□□ -1.37
CLN3-244ENST00000636147 LINC00483Q53H64 154 aa6.46□□□□□ -1.38
CLN3-244ENST00000636147 KRTAP13-1Q8IUC0 172 aa6.46□□□□□ -1.38
CLN3-244ENST00000636147 ANK3Q12955 4377 aaKnown RBP6.45□□□□□ -1.38
CLN3-244ENST00000636147 C9orf92A6NGG3 77 aa6.45□□□□□ -1.38
CLN3-244ENST00000636147 CRIPTQ9P021 101 aa6.44□□□□□ -1.38
CLN3-244ENST00000636147 PLAC8Q9NZF1 115 aa6.43□□□□□ -1.38
CLN3-244ENST00000636147 SPATA8Q6RVD6 105 aa6.4□□□□□ -1.38
CLN3-244ENST00000636147 ASB16-AS1Q495Z4 193 aa6.37□□□□□ -1.39
CLN3-244ENST00000636147 Q6ZRN7 208 aaPredicted RBP6.37□□□□□ -1.39
CLN3-244ENST00000636147 FBN3Q75N90 2809 aa6.37□□□□□ -1.39
CLN3-244ENST00000636147 A0A1B0GU33 70 aa6.36□□□□□ -1.39
CLN3-244ENST00000636147 SPINT4Q6UDR6 99 aa6.35□□□□□ -1.39
CLN3-244ENST00000636147 SMR3BP02814 79 aaPredicted RBP6.34□□□□□ -1.4
CLN3-244ENST00000636147 A0A0D9SG42 100 aa6.33□□□□□ -1.4
CLN3-244ENST00000636147 LINC00304Q8N9R0 145 aa6.33□□□□□ -1.4
CLN3-244ENST00000636147 KRTAP10-2P60368 255 aa6.29□□□□□ -1.4
CLN3-244ENST00000636147 KRTAP13-2Q52LG2 175 aa6.25□□□□□ -1.41
CLN3-244ENST00000636147 KRTAP21-3Q3LHN1 58 aa6.23□□□□□ -1.41
CLN3-244ENST00000636147 KRTAP10-1P60331 282 aa6.22□□□□□ -1.41
CLN3-244ENST00000636147 KRTAP13-3Q3SY46 172 aa6.19□□□□□ -1.42
CLN3-244ENST00000636147 MEGF8Q7Z7M0 2845 aa6.19□□□□□ -1.42
CLN3-244ENST00000636147 H1FX-AS1Q4G0G2 97 aa6.17□□□□□ -1.42
CLN3-244ENST00000636147 KRTAP25-1Q3LHN0 102 aa6.15□□□□□ -1.42
CLN3-244ENST00000636147 Q6ZSA8 131 aa6.14□□□□□ -1.43
CLN3-244ENST00000636147 H0YAA0 97 aa6.09□□□□□ -1.43
CLN3-244ENST00000636147 A0A0A0MQY5 61 aa6.08□□□□□ -1.44
CLN3-244ENST00000636147 KRTAP16-1A8MUX0 517 aa6.08□□□□□ -1.44
CLN3-244ENST00000636147 ROMO1P60602 79 aa6.08□□□□□ -1.44
CLN3-244ENST00000636147 DNAH10Q8IVF4 4471 aa6.06□□□□□ -1.44
CLN3-244ENST00000636147 RPL37P61927 97 aaKnown RBP6.06□□□□□ -1.44
CLN3-244ENST00000636147 A8MUU9 505 aa6.05□□□□□ -1.44
CLN3-244ENST00000636147 COX6B2Q6YFQ2 88 aa6.02□□□□□ -1.45
CLN3-244ENST00000636147 KRTAP1-4P0C5Y4 121 aa6.01□□□□□ -1.45
CLN3-244ENST00000636147 HUWE1Q7Z6Z7 4374 aaKnown RBP5.96□□□□□ -1.45
CLN3-244ENST00000636147 C10orf95Q9H7T3 257 aa5.93□□□□□ -1.46
CLN3-244ENST00000636147 S4R3F8 94 aa5.93□□□□□ -1.46
CLN3-244ENST00000636147 NDUFAF8A1L188 74 aa5.92□□□□□ -1.46
CLN3-244ENST00000636147 ANK2Q01484 3957 aa5.88□□□□□ -1.47
CLN3-244ENST00000636147 DNHD1Q96M86 4753 aa5.88□□□□□ -1.47
CLN3-244ENST00000636147 C20orf166-AS1Q96NR2 134 aa5.87□□□□□ -1.47
CLN3-244ENST00000636147 KRTAP3-1Q9BYR8 98 aa5.82□□□□□ -1.48
CLN3-244ENST00000636147 PLECQ15149 4684 aaKnown RBP5.82□□□□□ -1.48
CLN3-244ENST00000636147 RPS29P62273 56 aaKnown RBP5.82□□□□□ -1.48
CLN3-244ENST00000636147 LYSTQ99698 3801 aa5.81□□□□□ -1.48
CLN3-244ENST00000636147 DNAH9Q9NYC9 4486 aa5.78□□□□□ -1.48
CLN3-244ENST00000636147 P0C880 135 aa5.75□□□□□ -1.49
CLN3-244ENST00000636147 R4GN34 69 aa5.74□□□□□ -1.49
CLN3-244ENST00000636147 M0QZ58 72 aa5.73□□□□□ -1.49
CLN3-244ENST00000636147 DNAH1Q9P2D7 4330 aa5.72□□□□□ -1.49
CLN3-244ENST00000636147 DNAH11Q96DT5 4516 aa5.72□□□□□ -1.49
CLN3-244ENST00000636147 DNAH8Q96JB1 4490 aa5.71□□□□□ -1.5
CLN3-244ENST00000636147 TPRXLQ17RH7 258 aa5.7□□□□□ -1.5
CLN3-244ENST00000636147 LUZP6Q538Z0 58 aa5.7□□□□□ -1.5
CLN3-244ENST00000636147 CAMK2N1Q7Z7J9 78 aa5.68□□□□□ -1.5
CLN3-244ENST00000636147 Q5VSD8 79 aa5.67□□□□□ -1.5
CLN3-244ENST00000636147 KRTAP13-4Q3LI77 160 aa5.67□□□□□ -1.5
CLN3-244ENST00000636147 FRAS1Q86XX4 4008 aa5.66□□□□□ -1.5
CLN3-244ENST00000636147 STARD9Q9P2P6 4700 aa5.62□□□□□ -1.51
CLN3-244ENST00000636147 KRTAP12-2P59991 146 aa5.61□□□□□ -1.51
CLN3-244ENST00000636147 KRTAP10-6P60371 365 aaPredicted RBP5.61□□□□□ -1.51
CLN3-244ENST00000636147 XP32Q5T750 250 aa5.6□□□□□ -1.51
CLN3-244ENST00000636147 LRP1BQ9NZR2 4599 aa5.58□□□□□ -1.52
CLN3-244ENST00000636147 DNAH17Q9UFH2 4485 aa5.58□□□□□ -1.52
CLN3-244ENST00000636147 DNAH7Q8WXX0 4024 aa5.58□□□□□ -1.52
CLN3-244ENST00000636147 KRTAP10-8P60410 259 aa5.57□□□□□ -1.52
CLN3-244ENST00000636147 KMT2AQ03164 3969 aa5.57□□□□□ -1.52
CLN3-244ENST00000636147 ALMS1Q8TCU4 4167 aa5.57□□□□□ -1.52
CLN3-244ENST00000636147 VPS13DQ5THJ4 4388 aa5.54□□□□□ -1.52
CLN3-244ENST00000636147 CMYA5Q8N3K9 4069 aa5.53□□□□□ -1.52
CLN3-244ENST00000636147 J3QL48 77 aa5.51□□□□□ -1.53
CLN3-244ENST00000636147 DNAH2Q9P225 4427 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms