RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	TNP1	P09430	55 aa		0.96	□□□□□ -2.26
CNOT1-223	ENST00000628857	SPART-AS1	P0CW21	52 aa		0.96	□□□□□ -2.26
CNOT1-223	ENST00000628857	CHD9	Q3L8U1	2897 aa		0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857	SETD2	Q9BYW2	2564 aa	Predicted RBP	0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857	NBPF19	A0A087WUL8	3843 aa		0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857	DEFB124	Q8NES8	71 aa		0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857		Q9Y3F1	56 aa		0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857	FRY	Q5TBA9	3013 aa		0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857	HECTD1	Q9ULT8	2610 aa		0.95	□□□□□ -2.26
CNOT1-223	ENST00000628857	FRYL	O94915	3013 aa		0.94	□□□□□ -2.26
CNOT1-223	ENST00000628857		A0A096LPF7	62 aa		0.94	□□□□□ -2.26
CNOT1-223	ENST00000628857	TENM1	Q9UKZ4	2725 aa		0.93	□□□□□ -2.26
CNOT1-223	ENST00000628857	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	0.93	□□□□□ -2.26
CNOT1-223	ENST00000628857	PRUNE2	Q8WUY3	3088 aa		0.92	□□□□□ -2.26
CNOT1-223	ENST00000628857	CFAP54	Q96N23	3096 aa		0.92	□□□□□ -2.26
CNOT1-223	ENST00000628857	C5orf42	Q9H799	3197 aa		0.92	□□□□□ -2.26
CNOT1-223	ENST00000628857		M0R2T5	61 aa		0.92	□□□□□ -2.26
CNOT1-223	ENST00000628857	AKAP9	Q99996	3911 aa		0.92	□□□□□ -2.26
CNOT1-223	ENST00000628857	PIEZO1	Q92508	2521 aa		0.91	□□□□□ -2.26
CNOT1-223	ENST00000628857	ZFHX4	Q86UP3	3567 aa		0.91	□□□□□ -2.26
CNOT1-223	ENST00000628857	NBEA	Q8NFP9	2946 aa		0.91	□□□□□ -2.26
CNOT1-223	ENST00000628857	ATR	Q13535	2644 aa		0.91	□□□□□ -2.26
CNOT1-223	ENST00000628857	VPS13D	Q5THJ4	4388 aa		0.9	□□□□□ -2.26
CNOT1-223	ENST00000628857	DCHS2	Q6V1P9	2916 aa		0.9	□□□□□ -2.26
CNOT1-223	ENST00000628857	PTPN13	Q12923	2485 aa		0.9	□□□□□ -2.27
CNOT1-223	ENST00000628857	C9orf92	A6NGG3	77 aa		0.9	□□□□□ -2.27
CNOT1-223	ENST00000628857	KRTAP10-4	P60372	401 aa	Predicted RBP	0.9	□□□□□ -2.27
CNOT1-223	ENST00000628857	LINC01556	Q5JQF7	62 aa		0.9	□□□□□ -2.27
CNOT1-223	ENST00000628857	CSMD3	Q7Z407	3707 aa		0.9	□□□□□ -2.27
CNOT1-223	ENST00000628857	RELN	P78509	3460 aa		0.9	□□□□□ -2.27
CNOT1-223	ENST00000628857	SZT2	Q5T011	3432 aa		0.89	□□□□□ -2.27
CNOT1-223	ENST00000628857		H3BNG1	76 aa		0.89	□□□□□ -2.27
CNOT1-223	ENST00000628857	HELZ2	Q9BYK8	2649 aa	Known RBP	0.89	□□□□□ -2.27
CNOT1-223	ENST00000628857	TRIO	O75962	3097 aa		0.89	□□□□□ -2.27
CNOT1-223	ENST00000628857	PDZD2	O15018	2839 aa		0.88	□□□□□ -2.27
CNOT1-223	ENST00000628857	BOD1L1	Q8NFC6	3051 aa		0.88	□□□□□ -2.27
CNOT1-223	ENST00000628857	HTT	P42858	3142 aa		0.88	□□□□□ -2.27
CNOT1-223	ENST00000628857	COL12A1	Q99715	3063 aa		0.88	□□□□□ -2.27
CNOT1-223	ENST00000628857	FAM186A	A6NE01	2351 aa		0.88	□□□□□ -2.27
CNOT1-223	ENST00000628857	USP24	Q9UPU5	2620 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	LRRK2	Q5S007	2527 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	DNAH11	Q96DT5	4516 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	RIF1	Q5UIP0	2472 aa	Known RBP	0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	CD52	P31358	61 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	BDP1	A6H8Y1	2624 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	ITPR1	Q14643	2758 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	TENM4	Q6N022	2769 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	DMXL1	Q9Y485	3027 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	VPS13A	Q96RL7	3174 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	LYST	Q99698	3801 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	ATM	Q13315	3056 aa		0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	USP9Y	O00507	2555 aa	Predicted RBP	0.87	□□□□□ -2.27
CNOT1-223	ENST00000628857	NCOR2	Q9Y618	2525 aa		0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	COL7A1	Q02388	2944 aa		0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	ITPR3	Q14573	2671 aa		0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	NF1	P21359	2839 aa		0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	GOLGB1	Q14789	3259 aa	Known RBP	0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	DEFB133	Q30KQ1	61 aa		0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	BSN	Q9UPA5	3926 aa		0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	MAP1A	P78559	2803 aa	Predicted RBP	0.86	□□□□□ -2.27
CNOT1-223	ENST00000628857	GCN1	Q92616	2671 aa	Known RBP	0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	HIVEP3	Q5T1R4	2406 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	SPG11	Q96JI7	2443 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	EPG5	Q9HCE0	2579 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	SRCAP	Q6ZRS2	3230 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	SPEN	Q96T58	3664 aa	Known RBP	0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	VPS13B	Q7Z7G8	4022 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	CACNA1A	O00555	2505 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	LRBA	P50851	2863 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	FLNC	Q14315	2725 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	CHD8	Q9HCK8	2581 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	DNAH12	Q6ZR08	3092 aa		0.85	□□□□□ -2.27
CNOT1-223	ENST00000628857	MKI67	P46013	3256 aa	Known RBP	0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	SETX	Q7Z333	2677 aa	Known RBP	0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	KMT2A	Q03164	3969 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	CFAP47	Q6ZTR5	3102 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	ZZEF1	O43149	2961 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	KRTAP2-3	P0C7H8	128 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	HTN3	P15516	51 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	KRTAP2-4	Q9BYR9	128 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	KRTAP2-1	Q9BYU5	128 aa		0.84	□□□□□ -2.27
CNOT1-223	ENST00000628857	APC	P25054	2843 aa		0.84	□□□□□ -2.28
CNOT1-223	ENST00000628857	DMXL2	Q8TDJ6	3036 aa		0.84	□□□□□ -2.28
CNOT1-223	ENST00000628857	SON	P18583	2426 aa	Known RBP	0.84	□□□□□ -2.28
CNOT1-223	ENST00000628857	RPS29	P62273	56 aa	Known RBP	0.83	□□□□□ -2.28
CNOT1-223	ENST00000628857	DCHS1	Q96JQ0	3298 aa		0.83	□□□□□ -2.28
CNOT1-223	ENST00000628857	FBN2	P35556	2912 aa		0.83	□□□□□ -2.28
CNOT1-223	ENST00000628857	DNAH3	Q8TD57	4116 aa		0.83	□□□□□ -2.28
CNOT1-223	ENST00000628857	FREM2	Q5SZK8	3169 aa		0.82	□□□□□ -2.28
CNOT1-223	ENST00000628857	MTOR	P42345	2549 aa		0.82	□□□□□ -2.28
CNOT1-223	ENST00000628857	SPEG	Q15772	3267 aa		0.82	□□□□□ -2.28
CNOT1-223	ENST00000628857	ANKHD1	Q8IWZ3	2542 aa	Known RBP	0.82	□□□□□ -2.28
CNOT1-223	ENST00000628857	DNAH7	Q8WXX0	4024 aa		0.82	□□□□□ -2.28
CNOT1-223	ENST00000628857	CELSR3	Q9NYQ7	3312 aa		0.82	□□□□□ -2.28
CNOT1-223	ENST00000628857	ANK2	Q01484	3957 aa		0.81	□□□□□ -2.28
CNOT1-223	ENST00000628857	SMR3A	Q99954	134 aa		0.81	□□□□□ -2.28
CNOT1-223	ENST00000628857	KALRN	O60229	2985 aa		0.81	□□□□□ -2.28
CNOT1-223	ENST00000628857	WDFY4	Q6ZS81	3184 aa		0.8	□□□□□ -2.28
CNOT1-223	ENST00000628857	XIRP2	A4UGR9	3374 aa		0.8	□□□□□ -2.28

Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms