RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 FLNCQ14315 2725 aa4.68□□□□□ -1.66
VCL-206ENST00000623461 KRTAP1-4P0C5Y4 121 aa4.68□□□□□ -1.66
VCL-206ENST00000623461 LAMA1P25391 3075 aa4.66□□□□□ -1.66
VCL-206ENST00000623461 UBR5O95071 2799 aaPredicted RBP4.66□□□□□ -1.66
VCL-206ENST00000623461 FRYLO94915 3013 aa4.65□□□□□ -1.67
VCL-206ENST00000623461 USP34Q70CQ2 3546 aa4.64□□□□□ -1.67
VCL-206ENST00000623461 REV3LO60673 3130 aa4.64□□□□□ -1.67
VCL-206ENST00000623461 KALRNO60229 2985 aa4.63□□□□□ -1.67
VCL-206ENST00000623461 LRBAP50851 2863 aa4.63□□□□□ -1.67
VCL-206ENST00000623461 ITPR1Q14643 2758 aa4.63□□□□□ -1.67
VCL-206ENST00000623461 KRTAP10-8P60410 259 aa4.63□□□□□ -1.67
VCL-206ENST00000623461 TNRC18O15417 2968 aaPredicted RBP4.62□□□□□ -1.67
VCL-206ENST00000623461 TENM1Q9UKZ4 2725 aa4.62□□□□□ -1.67
VCL-206ENST00000623461 FREM2Q5SZK8 3169 aa4.59□□□□□ -1.68
VCL-206ENST00000623461 XP32Q5T750 250 aa4.58□□□□□ -1.68
VCL-206ENST00000623461 UNC80Q8N2C7 3258 aa4.58□□□□□ -1.68
VCL-206ENST00000623461 VCANP13611 3396 aa4.57□□□□□ -1.68
VCL-206ENST00000623461 TPRXLQ17RH7 258 aa4.55□□□□□ -1.68
VCL-206ENST00000623461 NBEAQ8NFP9 2946 aa4.55□□□□□ -1.68
VCL-206ENST00000623461 CRYBG3Q68DQ2 2970 aa4.55□□□□□ -1.68
VCL-206ENST00000623461 TENM3Q9P273 2699 aa4.55□□□□□ -1.68
VCL-206ENST00000623461 HRNRQ86YZ3 2850 aaPredicted RBP4.54□□□□□ -1.68
VCL-206ENST00000623461 ZZEF1O43149 2961 aa4.54□□□□□ -1.68
VCL-206ENST00000623461 SPTBN5Q9NRC6 3674 aaKnown RBP4.52□□□□□ -1.69
VCL-206ENST00000623461 COL6A3P12111 3177 aa4.52□□□□□ -1.69
VCL-206ENST00000623461 KRTAP12-2P59991 146 aa4.52□□□□□ -1.69
VCL-206ENST00000623461 HIVEP1P15822 2718 aa4.51□□□□□ -1.69
VCL-206ENST00000623461 BOD1L1Q8NFC6 3051 aa4.51□□□□□ -1.69
VCL-206ENST00000623461 SZT2Q5T011 3432 aa4.51□□□□□ -1.69
VCL-206ENST00000623461 ASH1LQ9NR48 2969 aaKnown RBP4.49□□□□□ -1.69
VCL-206ENST00000623461 TACC2O95359 2948 aa4.48□□□□□ -1.69
VCL-206ENST00000623461 NIPBLQ6KC79 2804 aaeCLIP4.48□□□□□ -1.696e-6■■■□□ 16.7
VCL-206ENST00000623461 KRTAP10-10P60014 251 aa4.48□□□□□ -1.69
VCL-206ENST00000623461 KRTAP12-1P59990 96 aa4.47□□□□□ -1.69
VCL-206ENST00000623461 DMXL2Q8TDJ6 3036 aa4.46□□□□□ -1.7
VCL-206ENST00000623461 NF1P21359 2839 aa4.46□□□□□ -1.7
VCL-206ENST00000623461 KRTAP13-4Q3LI77 160 aa4.46□□□□□ -1.7
VCL-206ENST00000623461 ADGRG4Q8IZF6 3080 aa4.45□□□□□ -1.7
VCL-206ENST00000623461 TENM4Q6N022 2769 aa4.45□□□□□ -1.7
VCL-206ENST00000623461 SPEGQ15772 3267 aa4.44□□□□□ -1.7
VCL-206ENST00000623461 KRTAP15-1Q3LI76 137 aa4.43□□□□□ -1.7
VCL-206ENST00000623461 COL12A1Q99715 3063 aa4.42□□□□□ -1.7
VCL-206ENST00000623461 KRTAP3-1Q9BYR8 98 aa4.4□□□□□ -1.7
VCL-206ENST00000623461 CFAP47Q6ZTR5 3102 aa4.4□□□□□ -1.71
VCL-206ENST00000623461 CELSR2Q9HCU4 2923 aa4.38□□□□□ -1.71
VCL-206ENST00000623461 ATMQ13315 3056 aa4.38□□□□□ -1.71
VCL-206ENST00000623461 EYSQ5T1H1 3165 aa4.35□□□□□ -1.71
VCL-206ENST00000623461 KRTAP10-6P60371 365 aaPredicted RBP4.34□□□□□ -1.71
VCL-206ENST00000623461 PDZD2O15018 2839 aa4.33□□□□□ -1.72
VCL-206ENST00000623461 INE1O15225 51 aa4.32□□□□□ -1.72
VCL-206ENST00000623461 MXRA5Q9NR99 2828 aa4.31□□□□□ -1.72
VCL-206ENST00000623461 DMXL1Q9Y485 3027 aa4.31□□□□□ -1.72
VCL-206ENST00000623461 A0A1B0GVY2 172 aa4.31□□□□□ -1.72
VCL-206ENST00000623461 WDFY3Q8IZQ1 3526 aa4.3□□□□□ -1.72
VCL-206ENST00000623461 ZANQ9Y493 2812 aa4.29□□□□□ -1.72
VCL-206ENST00000623461 DCHS2Q6V1P9 2916 aa4.29□□□□□ -1.72
VCL-206ENST00000623461 TGP01266 2768 aa4.29□□□□□ -1.72
VCL-206ENST00000623461 MYO15AQ9UKN7 3530 aa4.27□□□□□ -1.73
VCL-206ENST00000623461 CELSR1Q9NYQ6 3014 aa4.26□□□□□ -1.73
VCL-206ENST00000623461 NBPF19A0A087WUL8 3843 aa4.25□□□□□ -1.73
VCL-206ENST00000623461 LOC400499M0QZD8 3231 aa4.25□□□□□ -1.73
VCL-206ENST00000623461 FBN2P35556 2912 aa4.24□□□□□ -1.73
VCL-206ENST00000623461 AKAP9Q99996 3911 aa4.24□□□□□ -1.73
VCL-206ENST00000623461 BSNQ9UPA5 3926 aa4.23□□□□□ -1.73
VCL-206ENST00000623461 ASPMQ8IZT6 3477 aa4.21□□□□□ -1.74
VCL-206ENST00000623461 KRTAP3-2Q9BYR7 98 aa4.18□□□□□ -1.74
VCL-206ENST00000623461 PKD1L1Q8TDX9 2849 aa4.16□□□□□ -1.74
VCL-206ENST00000623461 LAMA5O15230 3695 aa4.15□□□□□ -1.74
VCL-206ENST00000623461 TENM2Q9NT68 2774 aa4.15□□□□□ -1.75
VCL-206ENST00000623461 KRTAP3-3Q9BYR6 98 aa4.14□□□□□ -1.75
VCL-206ENST00000623461 SPENQ96T58 3664 aaKnown RBP4.12□□□□□ -1.75
VCL-206ENST00000623461 VWFP04275 2813 aa4.11□□□□□ -1.75
VCL-206ENST00000623461 KRTAP23-1A1A580 65 aa4.1□□□□□ -1.75
VCL-206ENST00000623461 CMYA5Q8N3K9 4069 aa4.1□□□□□ -1.75
VCL-206ENST00000623461 DCHS1Q96JQ0 3298 aa4.06□□□□□ -1.76
VCL-206ENST00000623461 ALMS1Q8TCU4 4167 aa4.06□□□□□ -1.76
VCL-206ENST00000623461 DNAH6Q9C0G6 4158 aa4.04□□□□□ -1.76
VCL-206ENST00000623461 TRRAPQ9Y4A5 3859 aa4.03□□□□□ -1.76
VCL-206ENST00000623461 RELNP78509 3460 aa4.03□□□□□ -1.76
VCL-206ENST00000623461 CSMD1Q96PZ7 3565 aa4.02□□□□□ -1.77
VCL-206ENST00000623461 ZFHX3Q15911 3703 aa4.02□□□□□ -1.77
VCL-206ENST00000623461 DMDP11532 3685 aa4.01□□□□□ -1.77
VCL-206ENST00000623461 ZFHX4Q86UP3 3567 aa4.01□□□□□ -1.77
VCL-206ENST00000623461 MUC3AQ02505 3323 aa4□□□□□ -1.77
VCL-206ENST00000623461 DNAH3Q8TD57 4116 aa4□□□□□ -1.77
VCL-206ENST00000623461 COL7A1Q02388 2944 aa3.98□□□□□ -1.77
VCL-206ENST00000623461 VPS13CQ709C8 3753 aa3.98□□□□□ -1.77
VCL-206ENST00000623461 SMG1Q96Q15 3661 aaKnown RBP3.95□□□□□ -1.78
VCL-206ENST00000623461 SRRM2Q9UQ35 2752 aaKnown RBP3.94□□□□□ -1.78
VCL-206ENST00000623461 DNAH7Q8WXX0 4024 aa3.93□□□□□ -1.78
VCL-206ENST00000623461 FBN3Q75N90 2809 aa3.92□□□□□ -1.78
VCL-206ENST00000623461 KRTAP10-12P60413 245 aa3.88□□□□□ -1.79
VCL-206ENST00000623461 ANK3Q12955 4377 aaKnown RBP3.88□□□□□ -1.79
VCL-206ENST00000623461 DNAH1Q9P2D7 4330 aa3.86□□□□□ -1.79
VCL-206ENST00000623461 SVEP1Q4LDE5 3571 aa3.85□□□□□ -1.79
VCL-206ENST00000623461 KRTAP12-3P60328 96 aa3.84□□□□□ -1.79
VCL-206ENST00000623461 OTOGQ6ZRI0 2925 aa3.84□□□□□ -1.8
VCL-206ENST00000623461 MEGF8Q7Z7M0 2845 aa3.84□□□□□ -1.8
VCL-206ENST00000623461 FBN1P35555 2871 aaKnown RBP3.82□□□□□ -1.8
VCL-206ENST00000623461 MT1HL1P0DM35 61 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms