RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 ATMQ13315 3056 aa10.4□□□□□ -0.74
SPAST-203ENST00000615843 UTP20O75691 2785 aaKnown RBP10.39□□□□□ -0.75
SPAST-203ENST00000615843 ITPR2Q14571 2701 aa10.38□□□□□ -0.75
SPAST-203ENST00000615843 FLNCQ14315 2725 aa10.34□□□□□ -0.75
SPAST-203ENST00000615843 HIVEP1P15822 2718 aa10.33□□□□□ -0.76
SPAST-203ENST00000615843 C20orf166-AS1Q96NR2 134 aa10.31□□□□□ -0.76
SPAST-203ENST00000615843 BOD1L1Q8NFC6 3051 aa10.29□□□□□ -0.76
SPAST-203ENST00000615843 FRYLO94915 3013 aa10.26□□□□□ -0.77
SPAST-203ENST00000615843 COL12A1Q99715 3063 aa10.25□□□□□ -0.77
SPAST-203ENST00000615843 H0YAA0 97 aa10.25□□□□□ -0.77
SPAST-203ENST00000615843 C10orf95Q9H7T3 257 aa10.22□□□□□ -0.77
SPAST-203ENST00000615843 NIPBLQ6KC79 2804 aaeCLIP10.21□□□□□ -0.78
SPAST-203ENST00000615843 SZT2Q5T011 3432 aa10.18□□□□□ -0.78
SPAST-203ENST00000615843 CELSR2Q9HCU4 2923 aa10.16□□□□□ -0.78
SPAST-203ENST00000615843 COL6A3P12111 3177 aa10.16□□□□□ -0.78
SPAST-203ENST00000615843 ZZEF1O43149 2961 aa10.16□□□□□ -0.78
SPAST-203ENST00000615843 KMT2BQ9UMN6 2715 aaPredicted RBP10.11□□□□□ -0.79
SPAST-203ENST00000615843 REV3LO60673 3130 aa10.09□□□□□ -0.79
SPAST-203ENST00000615843 TNP1P09430 55 aa10.08□□□□□ -0.8
SPAST-203ENST00000615843 CFAP47Q6ZTR5 3102 aa10.07□□□□□ -0.8
SPAST-203ENST00000615843 KRTAP1-4P0C5Y4 121 aa10.02□□□□□ -0.81
SPAST-203ENST00000615843 P0C880 135 aa10.02□□□□□ -0.81
SPAST-203ENST00000615843 ZANQ9Y493 2812 aa10.02□□□□□ -0.81
SPAST-203ENST00000615843 DCHS2Q6V1P9 2916 aa9.99□□□□□ -0.81
SPAST-203ENST00000615843 PP632Q6XCG6 107 aa9.99□□□□□ -0.81
SPAST-203ENST00000615843 HRNRQ86YZ3 2850 aaPredicted RBP9.9□□□□□ -0.82
SPAST-203ENST00000615843 TNRC18O15417 2968 aaPredicted RBP9.88□□□□□ -0.83
SPAST-203ENST00000615843 KRTAP13-3Q3SY46 172 aa9.87□□□□□ -0.83
SPAST-203ENST00000615843 SPEGQ15772 3267 aa9.85□□□□□ -0.83
SPAST-203ENST00000615843 XP32Q5T750 250 aa9.84□□□□□ -0.83
SPAST-203ENST00000615843 FBN2P35556 2912 aa9.83□□□□□ -0.84
SPAST-203ENST00000615843 KRTAP10-8P60410 259 aa9.8□□□□□ -0.84
SPAST-203ENST00000615843 EYSQ5T1H1 3165 aa9.78□□□□□ -0.84
SPAST-203ENST00000615843 TENM4Q6N022 2769 aa9.77□□□□□ -0.85
SPAST-203ENST00000615843 CRYBG3Q68DQ2 2970 aa9.76□□□□□ -0.85
SPAST-203ENST00000615843 DMXL1Q9Y485 3027 aa9.76□□□□□ -0.85
SPAST-203ENST00000615843 TGP01266 2768 aa9.74□□□□□ -0.85
SPAST-203ENST00000615843 NF1P21359 2839 aa9.74□□□□□ -0.85
SPAST-203ENST00000615843 USP34Q70CQ2 3546 aa9.65□□□□□ -0.87
SPAST-203ENST00000615843 LOC400499M0QZD8 3231 aa9.62□□□□□ -0.87
SPAST-203ENST00000615843 SPTBN5Q9NRC6 3674 aaKnown RBP9.61□□□□□ -0.87
SPAST-203ENST00000615843 TENM3Q9P273 2699 aa9.59□□□□□ -0.87
SPAST-203ENST00000615843 KRTAP12-2P59991 146 aa9.51□□□□□ -0.89
SPAST-203ENST00000615843 A0A1B0GVY2 172 aa9.5□□□□□ -0.89
SPAST-203ENST00000615843 MXRA5Q9NR99 2828 aa9.49□□□□□ -0.89
SPAST-203ENST00000615843 CELSR1Q9NYQ6 3014 aa9.49□□□□□ -0.89
SPAST-203ENST00000615843 TPRXLQ17RH7 258 aa9.49□□□□□ -0.89
SPAST-203ENST00000615843 TENM1Q9UKZ4 2725 aa9.48□□□□□ -0.89
SPAST-203ENST00000615843 MYO15AQ9UKN7 3530 aa9.43□□□□□ -0.9
SPAST-203ENST00000615843 KRTAP12-1P59990 96 aa9.35□□□□□ -0.91
SPAST-203ENST00000615843 PDZD2O15018 2839 aa9.34□□□□□ -0.91
SPAST-203ENST00000615843 KRTAP3-1Q9BYR8 98 aa9.32□□□□□ -0.92
SPAST-203ENST00000615843 KRTAP13-4Q3LI77 160 aa9.26□□□□□ -0.93
SPAST-203ENST00000615843 WDFY3Q8IZQ1 3526 aa9.25□□□□□ -0.93
SPAST-203ENST00000615843 TENM2Q9NT68 2774 aa9.25□□□□□ -0.93
SPAST-203ENST00000615843 DCHS1Q96JQ0 3298 aa9.21□□□□□ -0.93
SPAST-203ENST00000615843 KRTAP21-3Q3LHN1 58 aa9.2□□□□□ -0.94
SPAST-203ENST00000615843 KRTAP10-10P60014 251 aa9.2□□□□□ -0.94
SPAST-203ENST00000615843 RELNP78509 3460 aa9.17□□□□□ -0.94
SPAST-203ENST00000615843 KRTAP10-6P60371 365 aaPredicted RBP9.12□□□□□ -0.95
SPAST-203ENST00000615843 PKD1L1Q8TDX9 2849 aa9.09□□□□□ -0.95
SPAST-203ENST00000615843 PRO2289Q9P1D8 64 aa9.09□□□□□ -0.95
SPAST-203ENST00000615843 ZFHX4Q86UP3 3567 aa9.08□□□□□ -0.96
SPAST-203ENST00000615843 CSMD1Q96PZ7 3565 aa9.06□□□□□ -0.96
SPAST-203ENST00000615843 VWFP04275 2813 aa9.04□□□□□ -0.96
SPAST-203ENST00000615843 KRTAP15-1Q3LI76 137 aa8.99□□□□□ -0.97
SPAST-203ENST00000615843 ASPMQ8IZT6 3477 aa8.9□□□□□ -0.98
SPAST-203ENST00000615843 FBN1P35555 2871 aaKnown RBP8.85□□□□□ -0.99
SPAST-203ENST00000615843 FBN3Q75N90 2809 aa8.84□□□□□ -0.99
SPAST-203ENST00000615843 SMG1Q96Q15 3661 aaKnown RBP8.82□□□□□ -1
SPAST-203ENST00000615843 LAMA5O15230 3695 aa8.79□□□□□ -1
SPAST-203ENST00000615843 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
SPAST-203ENST00000615843 MEGF8Q7Z7M0 2845 aa8.76□□□□□ -1.01
SPAST-203ENST00000615843 SRRM2Q9UQ35 2752 aaKnown RBP8.76□□□□□ -1.01
SPAST-203ENST00000615843 KRTAP3-3Q9BYR6 98 aa8.72□□□□□ -1.01
SPAST-203ENST00000615843 INE1O15225 51 aa8.64□□□□□ -1.03
SPAST-203ENST00000615843 SVEP1Q4LDE5 3571 aa8.64□□□□□ -1.03
SPAST-203ENST00000615843 CUBNO60494 3623 aa8.56□□□□□ -1.04
SPAST-203ENST00000615843 NBPF19A0A087WUL8 3843 aa8.55□□□□□ -1.04
SPAST-203ENST00000615843 OTOGQ6ZRI0 2925 aa8.54□□□□□ -1.04
SPAST-203ENST00000615843 COL7A1Q02388 2944 aa8.51□□□□□ -1.05
SPAST-203ENST00000615843 ANK3Q12955 4377 aaKnown RBP8.48□□□□□ -1.05
SPAST-203ENST00000615843 DMDP11532 3685 aa8.44□□□□□ -1.06
SPAST-203ENST00000615843 MT1HL1P0DM35 61 aa8.34□□□□□ -1.08
SPAST-203ENST00000615843 ZFHX3Q15911 3703 aa8.33□□□□□ -1.08
SPAST-203ENST00000615843 TRRAPQ9Y4A5 3859 aa8.32□□□□□ -1.08
SPAST-203ENST00000615843 MUC3AQ02505 3323 aa8.31□□□□□ -1.08
SPAST-203ENST00000615843 SPENQ96T58 3664 aaKnown RBP8.28□□□□□ -1.08
SPAST-203ENST00000615843 CSMD2Q7Z408 3487 aa8.27□□□□□ -1.08
SPAST-203ENST00000615843 KRTAP10-12P60413 245 aa8.25□□□□□ -1.09
SPAST-203ENST00000615843 KRTAP23-1A1A580 65 aa8.24□□□□□ -1.09
SPAST-203ENST00000615843 KRTAP10-4P60372 401 aaPredicted RBP8.23□□□□□ -1.09
SPAST-203ENST00000615843 KRTAP12-3P60328 96 aa8.14□□□□□ -1.11
SPAST-203ENST00000615843 LORP23490 312 aaPredicted RBP8.11□□□□□ -1.11
SPAST-203ENST00000615843 LCE3AQ5TA76 89 aa8.1□□□□□ -1.11
SPAST-203ENST00000615843 HUWE1Q7Z6Z7 4374 aaKnown RBP8.1□□□□□ -1.11
SPAST-203ENST00000615843 VPS13CQ709C8 3753 aa7.96□□□□□ -1.14
SPAST-203ENST00000615843 BSNQ9UPA5 3926 aa7.94□□□□□ -1.14
SPAST-203ENST00000615843 CRCT1Q9UGL9 99 aa7.92□□□□□ -1.14
SPAST-203ENST00000615843 CSMD3Q7Z407 3707 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms