RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 Q5XG85 94 aa11.6□□□□□ -0.55
MMP28-201ENST00000605424 LINC00208Q96KT6 92 aa11.6□□□□□ -0.55
MMP28-201ENST00000605424 KRTAP13-2Q52LG2 175 aa11.6□□□□□ -0.55
MMP28-201ENST00000605424 DYNC1H1Q14204 4646 aaKnown RBP11.59□□□□□ -0.55
MMP28-201ENST00000605424 TRAV22A0A0B4J277 110 aa11.59□□□□□ -0.55
MMP28-201ENST00000605424 EPPK1P58107 5090 aaKnown RBP11.59□□□□□ -0.55
MMP28-201ENST00000605424 A0A1B0GVY2 172 aa11.58□□□□□ -0.55
MMP28-201ENST00000605424 LRP1BQ9NZR2 4599 aa11.58□□□□□ -0.56
MMP28-201ENST00000605424 KRTAP1-4P0C5Y4 121 aa11.57□□□□□ -0.56
MMP28-201ENST00000605424 MRPL34Q9BQ48 92 aaKnown RBP11.57□□□□□ -0.56
MMP28-201ENST00000605424 SPINK6Q6UWN8 80 aa11.54□□□□□ -0.56
MMP28-201ENST00000605424 SMIM26A0A096LP01 95 aa11.53□□□□□ -0.56
MMP28-201ENST00000605424 C1orf64Q8NEQ6 169 aa11.53□□□□□ -0.56
MMP28-201ENST00000605424 C8orf87E5RJ46 101 aa11.52□□□□□ -0.56
MMP28-201ENST00000605424 CYP4F30PQ9H0H9 118 aa11.52□□□□□ -0.57
MMP28-201ENST00000605424 SPANXA2-OT1Q8N9U9 137 aa11.5□□□□□ -0.57
MMP28-201ENST00000605424 LIMD2Q9BT23 127 aa11.49□□□□□ -0.57
MMP28-201ENST00000605424 NOTCH2NLQ7Z3S9 236 aa11.48□□□□□ -0.57
MMP28-201ENST00000605424 NDUFS5O43920 106 aa11.48□□□□□ -0.57
MMP28-201ENST00000605424 PLA2G1BP04054 148 aaKnown RBP11.48□□□□□ -0.57
MMP28-201ENST00000605424 C1orf195Q5TG92 126 aa11.45□□□□□ -0.58
MMP28-201ENST00000605424 APOBP04114 4563 aaKnown RBP11.44□□□□□ -0.58
MMP28-201ENST00000605424 C4orf48Q5BLP8 95 aa11.43□□□□□ -0.58
MMP28-201ENST00000605424 TYMSOSQ8TAI1 123 aa11.43□□□□□ -0.58
MMP28-201ENST00000605424 VPS13BQ7Z7G8 4022 aa11.42□□□□□ -0.58
MMP28-201ENST00000605424 SPINK1P00995 79 aa11.41□□□□□ -0.58
MMP28-201ENST00000605424 LINC00313P59037 77 aa11.4□□□□□ -0.58
MMP28-201ENST00000605424 FP248Q71RG6 208 aaPredicted RBP11.39□□□□□ -0.59
MMP28-201ENST00000605424 RPS29P62273 56 aaKnown RBP11.35□□□□□ -0.59
MMP28-201ENST00000605424 C4orf26Q17RF5 130 aa11.35□□□□□ -0.59
MMP28-201ENST00000605424 IGLV7-46A0A075B6I9 117 aa11.34□□□□□ -0.59
MMP28-201ENST00000605424 PRR4Q16378 134 aa11.34□□□□□ -0.59
MMP28-201ENST00000605424 SPAG11AQ6PDA7 123 aa11.33□□□□□ -0.6
MMP28-201ENST00000605424 LOC101927531A0A1B0GV80 90 aa11.32□□□□□ -0.6
MMP28-201ENST00000605424 Q8N9P0 234 aaPredicted RBP11.32□□□□□ -0.6
MMP28-201ENST00000605424 SMR3BP02814 79 aaPredicted RBP11.31□□□□□ -0.6
MMP28-201ENST00000605424 KRTAP13-3Q3SY46 172 aa11.31□□□□□ -0.6
MMP28-201ENST00000605424 KIAA1109Q2LD37 5005 aa11.3□□□□□ -0.6
MMP28-201ENST00000605424 HSPG2P98160 4391 aa11.3□□□□□ -0.6
MMP28-201ENST00000605424 RYR1P21817 5038 aa11.28□□□□□ -0.6
MMP28-201ENST00000605424 PRR26Q8N8Z3 221 aa11.28□□□□□ -0.6
MMP28-201ENST00000605424 LINC00304Q8N9R0 145 aa11.28□□□□□ -0.6
MMP28-201ENST00000605424 PCOTHQ58A44 107 aa11.27□□□□□ -0.61
MMP28-201ENST00000605424 Q5W150 140 aa11.27□□□□□ -0.61
MMP28-201ENST00000605424 FAT1Q14517 4588 aa11.26□□□□□ -0.61
MMP28-201ENST00000605424 FAM229AH3BQW9 127 aa11.26□□□□□ -0.61
MMP28-201ENST00000605424 KRTAP10-4P60372 401 aaPredicted RBP11.26□□□□□ -0.61
MMP28-201ENST00000605424 BIRC6Q9NR09 4857 aa11.25□□□□□ -0.61
MMP28-201ENST00000605424 KRTAP16-1A8MUX0 517 aa11.24□□□□□ -0.61
MMP28-201ENST00000605424 MPLKIPQ8TAP9 179 aa11.2□□□□□ -0.62
MMP28-201ENST00000605424 Q1T7F1 81 aa11.19□□□□□ -0.62
MMP28-201ENST00000605424 KRTAP17-1Q9BYP8 105 aa11.17□□□□□ -0.62
MMP28-201ENST00000605424 V9GYY9 64 aa11.13□□□□□ -0.63
MMP28-201ENST00000605424 COA5Q86WW8 74 aa11.13□□□□□ -0.63
MMP28-201ENST00000605424 IGKV2-30P06310 120 aa11.09□□□□□ -0.63
MMP28-201ENST00000605424 HERC2O95714 4834 aa11.03□□□□□ -0.64
MMP28-201ENST00000605424 RETNLBQ9BQ08 111 aa11.03□□□□□ -0.64
MMP28-201ENST00000605424 HRES1P13985 223 aa11.01□□□□□ -0.65
MMP28-201ENST00000605424 PKHD1L1Q86WI1 4243 aa11.01□□□□□ -0.65
MMP28-201ENST00000605424 ACYP2P14621 99 aa10.99□□□□□ -0.65
MMP28-201ENST00000605424 DMAC1Q96GE9 116 aa10.97□□□□□ -0.65
MMP28-201ENST00000605424 IGKV2D-30A0A075B6S6 120 aa10.92□□□□□ -0.66
MMP28-201ENST00000605424 PSPHP1O15172 72 aa10.92□□□□□ -0.66
MMP28-201ENST00000605424 KRTAP4-5Q9BYR2 181 aa10.92□□□□□ -0.66
MMP28-201ENST00000605424 Q5VSD8 79 aa10.91□□□□□ -0.66
MMP28-201ENST00000605424 C20orf166-AS1Q96NR2 134 aa10.91□□□□□ -0.66
MMP28-201ENST00000605424 ABCA13Q86UQ4 5058 aa10.9□□□□□ -0.67
MMP28-201ENST00000605424 A8MUU9 505 aa10.9□□□□□ -0.67
MMP28-201ENST00000605424 Q8N1X5 172 aa10.9□□□□□ -0.67
MMP28-201ENST00000605424 PRO0628Q9UI54 55 aa10.9□□□□□ -0.67
MMP28-201ENST00000605424 A8MUN3 132 aa10.88□□□□□ -0.67
MMP28-201ENST00000605424 KRTAP10-8P60410 259 aa10.87□□□□□ -0.67
MMP28-201ENST00000605424 C7orf65Q6ZTY9 151 aa10.87□□□□□ -0.67
MMP28-201ENST00000605424 LINC01558Q9Y6Z2 57 aa10.86□□□□□ -0.67
MMP28-201ENST00000605424 BRK1Q8WUW1 75 aa10.85□□□□□ -0.67
MMP28-201ENST00000605424 C9orf92A6NGG3 77 aa10.84□□□□□ -0.67
MMP28-201ENST00000605424 Q5VV11 94 aa10.84□□□□□ -0.67
MMP28-201ENST00000605424 PRR15LQ9BU68 103 aa10.82□□□□□ -0.68
MMP28-201ENST00000605424 LRP1Q07954 4544 aaKnown RBP10.82□□□□□ -0.68
MMP28-201ENST00000605424 MYCBP2O75592 4640 aa10.81□□□□□ -0.68
MMP28-201ENST00000605424 CHKB-CPT1BH3BT56 60 aa10.8□□□□□ -0.68
MMP28-201ENST00000605424 FLG2Q5D862 2391 aaPredicted RBP10.79□□□□□ -0.68
MMP28-201ENST00000605424 Q75L30 129 aa10.78□□□□□ -0.68
MMP28-201ENST00000605424 FAT3Q8TDW7 4589 aa10.76□□□□□ -0.69
MMP28-201ENST00000605424 PCLOQ9Y6V0 5065 aa10.71□□□□□ -0.69
MMP28-201ENST00000605424 TNXBP22105 4242 aa10.69□□□□□ -0.7
MMP28-201ENST00000605424 SPINK7P58062 85 aa10.6□□□□□ -0.71
MMP28-201ENST00000605424 A6NED7 52 aa10.6□□□□□ -0.71
MMP28-201ENST00000605424 MT1HL1P0DM35 61 aa10.56□□□□□ -0.72
MMP28-201ENST00000605424 ATP11AUNQ6ZP68 121 aa10.55□□□□□ -0.72
MMP28-201ENST00000605424 A0A1B0GU69 56 aa10.52□□□□□ -0.72
MMP28-201ENST00000605424 RPL37P61927 97 aaKnown RBP10.51□□□□□ -0.73
MMP28-201ENST00000605424 SPTSSBQ8NFR3 76 aa10.51□□□□□ -0.73
MMP28-201ENST00000605424 CDC42SE1Q9NRR8 79 aa10.51□□□□□ -0.73
MMP28-201ENST00000605424 LCA10Q71F78 164 aa10.48□□□□□ -0.73
MMP28-201ENST00000605424 XP32Q5T750 250 aa10.46□□□□□ -0.73
MMP28-201ENST00000605424 KRTAP3-1Q9BYR8 98 aa10.46□□□□□ -0.74
MMP28-201ENST00000605424 DMBT1Q9UGM3 2413 aaPredicted RBP10.46□□□□□ -0.74
MMP28-201ENST00000605424 COX6B2Q6YFQ2 88 aa10.44□□□□□ -0.74
MMP28-201ENST00000605424 A8MU10 97 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms