RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 KALRNO60229 2985 aa11.01□□□□□ -0.65
UPF1-207ENST00000599848 TACC2O95359 2948 aa10.99□□□□□ -0.65
UPF1-207ENST00000599848 BOD1L1Q8NFC6 3051 aa10.99□□□□□ -0.65
UPF1-207ENST00000599848 FRYLO94915 3013 aa10.99□□□□□ -0.65
UPF1-207ENST00000599848 FLNCQ14315 2725 aa10.98□□□□□ -0.65
UPF1-207ENST00000599848 H3BS24 57 aa10.98□□□□□ -0.65
UPF1-207ENST00000599848 KRTAP10-10P60014 251 aa10.97□□□□□ -0.65
UPF1-207ENST00000599848 KRTAP1-4P0C5Y4 121 aa10.95□□□□□ -0.66
UPF1-207ENST00000599848 ADGRG4Q8IZF6 3080 aa10.94□□□□□ -0.66
UPF1-207ENST00000599848 COL12A1Q99715 3063 aa10.94□□□□□ -0.66
UPF1-207ENST00000599848 ITPR1Q14643 2758 aa10.93□□□□□ -0.66
UPF1-207ENST00000599848 DMXL2Q8TDJ6 3036 aa10.92□□□□□ -0.66
UPF1-207ENST00000599848 KRTAP16-1A8MUX0 517 aa10.88□□□□□ -0.67
UPF1-207ENST00000599848 COL6A3P12111 3177 aa10.86□□□□□ -0.67
UPF1-207ENST00000599848 C10orf95Q9H7T3 257 aa10.83□□□□□ -0.68
UPF1-207ENST00000599848 A0A1B0GVY2 172 aa10.82□□□□□ -0.68
UPF1-207ENST00000599848 TENM4Q6N022 2769 aa10.81□□□□□ -0.68
UPF1-207ENST00000599848 LRBAP50851 2863 aa10.81□□□□□ -0.68
UPF1-207ENST00000599848 A6NN06 94 aa10.77□□□□□ -0.68
UPF1-207ENST00000599848 REV3LO60673 3130 aa10.76□□□□□ -0.69
UPF1-207ENST00000599848 KRTAP13-3Q3SY46 172 aa10.75□□□□□ -0.69
UPF1-207ENST00000599848 ASH1LQ9NR48 2969 aaKnown RBP10.73□□□□□ -0.69
UPF1-207ENST00000599848 SPEGQ15772 3267 aa10.72□□□□□ -0.69
UPF1-207ENST00000599848 USP34Q70CQ2 3546 aa10.71□□□□□ -0.69
UPF1-207ENST00000599848 ZZEF1O43149 2961 aa10.7□□□□□ -0.7
UPF1-207ENST00000599848 CFAP47Q6ZTR5 3102 aa10.68□□□□□ -0.7
UPF1-207ENST00000599848 UTP20O75691 2785 aaKnown RBP10.67□□□□□ -0.7
UPF1-207ENST00000599848 HIVEP1P15822 2718 aa10.66□□□□□ -0.7
UPF1-207ENST00000599848 EYSQ5T1H1 3165 aa10.66□□□□□ -0.7
UPF1-207ENST00000599848 SPTBN5Q9NRC6 3674 aaKnown RBP10.59□□□□□ -0.71
UPF1-207ENST00000599848 CELSR2Q9HCU4 2923 aa10.53□□□□□ -0.72
UPF1-207ENST00000599848 NDUFAF8A1L188 74 aa10.51□□□□□ -0.73
UPF1-207ENST00000599848 ZANQ9Y493 2812 aa10.5□□□□□ -0.73
UPF1-207ENST00000599848 DMXL1Q9Y485 3027 aa10.49□□□□□ -0.73
UPF1-207ENST00000599848 TNRC18O15417 2968 aaPredicted RBP10.46□□□□□ -0.74
UPF1-207ENST00000599848 APCP25054 2843 aa10.46□□□□□ -0.74
UPF1-207ENST00000599848 NIPBLQ6KC79 2804 aaeCLIP10.43□□□□□ -0.746e-6■■■□□ 16.7
UPF1-207ENST00000599848 CRYBG3Q68DQ2 2970 aa10.43□□□□□ -0.74
UPF1-207ENST00000599848 LOC400499M0QZD8 3231 aa10.41□□□□□ -0.74
UPF1-207ENST00000599848 P0C880 135 aa10.37□□□□□ -0.75
UPF1-207ENST00000599848 DCHS2Q6V1P9 2916 aa10.37□□□□□ -0.75
UPF1-207ENST00000599848 MYO15AQ9UKN7 3530 aa10.33□□□□□ -0.76
UPF1-207ENST00000599848 HRNRQ86YZ3 2850 aaPredicted RBP10.25□□□□□ -0.77
UPF1-207ENST00000599848 H0YAA0 97 aa10.25□□□□□ -0.77
UPF1-207ENST00000599848 FBN2P35556 2912 aa10.23□□□□□ -0.77
UPF1-207ENST00000599848 NF1P21359 2839 aa10.22□□□□□ -0.77
UPF1-207ENST00000599848 TENM3Q9P273 2699 aa10.17□□□□□ -0.78
UPF1-207ENST00000599848 TENM1Q9UKZ4 2725 aa10.05□□□□□ -0.8
UPF1-207ENST00000599848 WDFY3Q8IZQ1 3526 aa10.01□□□□□ -0.81
UPF1-207ENST00000599848 KRTAP13-4Q3LI77 160 aa9.98□□□□□ -0.81
UPF1-207ENST00000599848 RELNP78509 3460 aa9.98□□□□□ -0.81
UPF1-207ENST00000599848 TENM2Q9NT68 2774 aa9.97□□□□□ -0.81
UPF1-207ENST00000599848 MXRA5Q9NR99 2828 aa9.91□□□□□ -0.82
UPF1-207ENST00000599848 DCHS1Q96JQ0 3298 aa9.9□□□□□ -0.82
UPF1-207ENST00000599848 CELSR1Q9NYQ6 3014 aa9.82□□□□□ -0.84
UPF1-207ENST00000599848 LAMA5O15230 3695 aa9.77□□□□□ -0.85
UPF1-207ENST00000599848 ASPMQ8IZT6 3477 aa9.75□□□□□ -0.85
UPF1-207ENST00000599848 KRTAP12-2P59991 146 aa9.74□□□□□ -0.85
UPF1-207ENST00000599848 ZFHX4Q86UP3 3567 aa9.72□□□□□ -0.85
UPF1-207ENST00000599848 KRTAP15-1Q3LI76 137 aa9.7□□□□□ -0.86
UPF1-207ENST00000599848 PKD1L1Q8TDX9 2849 aa9.66□□□□□ -0.86
UPF1-207ENST00000599848 KRTAP12-1P59990 96 aa9.64□□□□□ -0.87
UPF1-207ENST00000599848 MUC3AQ02505 3323 aa9.57□□□□□ -0.88
UPF1-207ENST00000599848 DMDP11532 3685 aa9.53□□□□□ -0.88
UPF1-207ENST00000599848 TGP01266 2768 aa9.51□□□□□ -0.89
UPF1-207ENST00000599848 PDZD2O15018 2839 aa9.49□□□□□ -0.89
UPF1-207ENST00000599848 VWFP04275 2813 aa9.49□□□□□ -0.89
UPF1-207ENST00000599848 FBN1P35555 2871 aaKnown RBP9.46□□□□□ -0.89
UPF1-207ENST00000599848 SMG1Q96Q15 3661 aaKnown RBP9.46□□□□□ -0.89
UPF1-207ENST00000599848 CSMD1Q96PZ7 3565 aa9.46□□□□□ -0.9
UPF1-207ENST00000599848 MT1HL1P0DM35 61 aa9.45□□□□□ -0.9
UPF1-207ENST00000599848 KRTAP3-1Q9BYR8 98 aa9.39□□□□□ -0.91
UPF1-207ENST00000599848 NBPF19A0A087WUL8 3843 aa9.36□□□□□ -0.91
UPF1-207ENST00000599848 KRTAP10-12P60413 245 aa9.33□□□□□ -0.92
UPF1-207ENST00000599848 SPENQ96T58 3664 aaKnown RBP9.32□□□□□ -0.92
UPF1-207ENST00000599848 FBN3Q75N90 2809 aa9.29□□□□□ -0.92
UPF1-207ENST00000599848 OTOGQ6ZRI0 2925 aa9.27□□□□□ -0.92
UPF1-207ENST00000599848 ZFHX3Q15911 3703 aa9.27□□□□□ -0.93
UPF1-207ENST00000599848 SVEP1Q4LDE5 3571 aa9.23□□□□□ -0.93
UPF1-207ENST00000599848 KRTAP10-6P60371 365 aaPredicted RBP9.2□□□□□ -0.94
UPF1-207ENST00000599848 CUBNO60494 3623 aa9.18□□□□□ -0.94
UPF1-207ENST00000599848 SRRM2Q9UQ35 2752 aaKnown RBP9.14□□□□□ -0.95
UPF1-207ENST00000599848 CSMD2Q7Z408 3487 aa9.11□□□□□ -0.95
UPF1-207ENST00000599848 INE1O15225 51 aa9.06□□□□□ -0.96
UPF1-207ENST00000599848 KRTAP23-1A1A580 65 aa9.05□□□□□ -0.96
UPF1-207ENST00000599848 CRCT1Q9UGL9 99 aa9.01□□□□□ -0.97
UPF1-207ENST00000599848 KRTAP10-4P60372 401 aaPredicted RBP8.97□□□□□ -0.97
UPF1-207ENST00000599848 KRTAP12-3P60328 96 aa8.96□□□□□ -0.98
UPF1-207ENST00000599848 KRTAP4-5Q9BYR2 181 aa8.94□□□□□ -0.98
UPF1-207ENST00000599848 ANK3Q12955 4377 aaKnown RBP8.9□□□□□ -0.98
UPF1-207ENST00000599848 TRRAPQ9Y4A5 3859 aa8.87□□□□□ -0.99
UPF1-207ENST00000599848 KRTAP8-1Q8IUC2 63 aa8.86□□□□□ -0.99
UPF1-207ENST00000599848 KRTAP3-2Q9BYR7 98 aa8.81□□□□□ -1
UPF1-207ENST00000599848 KRTAP3-3Q9BYR6 98 aa8.78□□□□□ -1
UPF1-207ENST00000599848 MEGF8Q7Z7M0 2845 aa8.77□□□□□ -1.01
UPF1-207ENST00000599848 COL7A1Q02388 2944 aa8.76□□□□□ -1.01
UPF1-207ENST00000599848 BSNQ9UPA5 3926 aa8.69□□□□□ -1.02
UPF1-207ENST00000599848 LCE3AQ5TA76 89 aa8.61□□□□□ -1.03
UPF1-207ENST00000599848 HUWE1Q7Z6Z7 4374 aaKnown RBP8.52□□□□□ -1.05
UPF1-207ENST00000599848 LORP23490 312 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms