RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 LINC01558Q9Y6Z2 57 aa10.43□□□□□ -0.74
SHKBP1-205ENST00000594973 PLAC8Q9NZF1 115 aa10.42□□□□□ -0.74
SHKBP1-205ENST00000594973 DNAH8Q96JB1 4490 aa10.41□□□□□ -0.74
SHKBP1-205ENST00000594973 A0A087WSZ3 146 aa10.41□□□□□ -0.74
SHKBP1-205ENST00000594973 KRTAP13-1Q8IUC0 172 aa10.4□□□□□ -0.74
SHKBP1-205ENST00000594973 HYDINQ4G0P3 5121 aa10.4□□□□□ -0.74
SHKBP1-205ENST00000594973 MOBPQ13875 183 aa10.39□□□□□ -0.75
SHKBP1-205ENST00000594973 RPL37AP61513 92 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-205ENST00000594973 A8MWP4 228 aa10.37□□□□□ -0.75
SHKBP1-205ENST00000594973 PSORS1C2Q9UIG4 136 aa10.37□□□□□ -0.75
SHKBP1-205ENST00000594973 SPRR1BP22528 89 aa10.36□□□□□ -0.75
SHKBP1-205ENST00000594973 ALMS1Q8TCU4 4167 aa10.36□□□□□ -0.75
SHKBP1-205ENST00000594973 DNAH5Q8TE73 4624 aa10.35□□□□□ -0.75
SHKBP1-205ENST00000594973 DNAH11Q96DT5 4516 aa10.35□□□□□ -0.75
SHKBP1-205ENST00000594973 KRTAP10-2P60368 255 aa10.34□□□□□ -0.75
SHKBP1-205ENST00000594973 LINC00472Q9H8W2 130 aa10.3□□□□□ -0.76
SHKBP1-205ENST00000594973 FAT2Q9NYQ8 4349 aa10.3□□□□□ -0.76
SHKBP1-205ENST00000594973 IGLV9-49A0A0B4J1Y8 123 aa10.29□□□□□ -0.76
SHKBP1-205ENST00000594973 SPAG11AQ6PDA7 123 aa10.29□□□□□ -0.76
SHKBP1-205ENST00000594973 PKD1P98161 4303 aa10.28□□□□□ -0.76
SHKBP1-205ENST00000594973 TP53AIP1Q9HCN2 124 aa10.27□□□□□ -0.77
SHKBP1-205ENST00000594973 MMP24-AS1A0A0U1RRL7 71 aa10.26□□□□□ -0.77
SHKBP1-205ENST00000594973 ZNF861PO60384 105 aa10.25□□□□□ -0.77
SHKBP1-205ENST00000594973 ANAPC11Q9NYG5 84 aa10.25□□□□□ -0.77
SHKBP1-205ENST00000594973 C8orf87E5RJ46 101 aa10.24□□□□□ -0.77
SHKBP1-205ENST00000594973 SPINK7P58062 85 aa10.24□□□□□ -0.77
SHKBP1-205ENST00000594973 CIRBP-AS1Q8TBR5 109 aa10.24□□□□□ -0.77
SHKBP1-205ENST00000594973 C4orf48Q5BLP8 95 aa10.22□□□□□ -0.77
SHKBP1-205ENST00000594973 ZNF706Q9Y5V0 76 aaPredicted RBP10.22□□□□□ -0.77
SHKBP1-205ENST00000594973 LINC00483Q53H64 154 aa10.22□□□□□ -0.77
SHKBP1-205ENST00000594973 PCOTHQ58A44 107 aa10.22□□□□□ -0.77
SHKBP1-205ENST00000594973 ASB16-AS1Q495Z4 193 aa10.2□□□□□ -0.78
SHKBP1-205ENST00000594973 IGLV7-43P04211 117 aa10.19□□□□□ -0.78
SHKBP1-205ENST00000594973 KRTAP10-1P60331 282 aa10.19□□□□□ -0.78
SHKBP1-205ENST00000594973 HRES1P13985 223 aa10.18□□□□□ -0.78
SHKBP1-205ENST00000594973 LRP1BQ9NZR2 4599 aa10.16□□□□□ -0.78
SHKBP1-205ENST00000594973 SACSQ9NZJ4 4579 aa10.16□□□□□ -0.78
SHKBP1-205ENST00000594973 LINC00313P59037 77 aa10.15□□□□□ -0.78
SHKBP1-205ENST00000594973 PKHD1P08F94 4074 aa10.13□□□□□ -0.79
SHKBP1-205ENST00000594973 Q6ZSA8 131 aa10.12□□□□□ -0.79
SHKBP1-205ENST00000594973 A0A087X002 238 aa10.11□□□□□ -0.79
SHKBP1-205ENST00000594973 PLA2G1BP04054 148 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-205ENST00000594973 VPS13BQ7Z7G8 4022 aa10.07□□□□□ -0.8
SHKBP1-205ENST00000594973 C8orf17Q9NRJ1 99 aa10.07□□□□□ -0.8
SHKBP1-205ENST00000594973 LINC01554Q52M75 96 aa10.04□□□□□ -0.8
SHKBP1-205ENST00000594973 PRAC1Q96KF2 57 aa10.04□□□□□ -0.8
SHKBP1-205ENST00000594973 Q96NJ1 140 aa10.04□□□□□ -0.8
SHKBP1-205ENST00000594973 PRR26Q8N8Z3 221 aa9.98□□□□□ -0.81
SHKBP1-205ENST00000594973 MRPL34Q9BQ48 92 aaKnown RBP9.98□□□□□ -0.81
SHKBP1-205ENST00000594973 A0A1B0GVX0 72 aa9.97□□□□□ -0.81
SHKBP1-205ENST00000594973 ACYP2P14621 99 aa9.96□□□□□ -0.82
SHKBP1-205ENST00000594973 SPATA8Q6RVD6 105 aa9.94□□□□□ -0.82
SHKBP1-205ENST00000594973 ADM2Q7Z4H4 148 aa9.94□□□□□ -0.82
SHKBP1-205ENST00000594973 KMT2CQ8NEZ4 4911 aaKnown RBP9.93□□□□□ -0.82
SHKBP1-205ENST00000594973 IGHV6-1A0A0B4J1U7 121 aa9.92□□□□□ -0.82
SHKBP1-205ENST00000594973 SPINK6Q6UWN8 80 aa9.92□□□□□ -0.82
SHKBP1-205ENST00000594973 SSBP3-AS1Q7Z2R9 100 aa9.92□□□□□ -0.82
SHKBP1-205ENST00000594973 DYNC1H1Q14204 4646 aaKnown RBP9.91□□□□□ -0.82
SHKBP1-205ENST00000594973 KRTAP13-2Q52LG2 175 aa9.91□□□□□ -0.82
SHKBP1-205ENST00000594973 CDK2AP2O75956 126 aa9.9□□□□□ -0.82
SHKBP1-205ENST00000594973 RYR2Q92736 4967 aa9.9□□□□□ -0.82
SHKBP1-205ENST00000594973 H3BS24 57 aa9.89□□□□□ -0.83
SHKBP1-205ENST00000594973 KRTAP1-4P0C5Y4 121 aa9.87□□□□□ -0.83
SHKBP1-205ENST00000594973 A0A1B0GU69 56 aa9.86□□□□□ -0.83
SHKBP1-205ENST00000594973 SMR3BP02814 79 aaPredicted RBP9.85□□□□□ -0.83
SHKBP1-205ENST00000594973 KRTAP13-3Q3SY46 172 aa9.85□□□□□ -0.83
SHKBP1-205ENST00000594973 DMAC1Q96GE9 116 aa9.84□□□□□ -0.83
SHKBP1-205ENST00000594973 NOTCH2NLQ7Z3S9 236 aa9.84□□□□□ -0.83
SHKBP1-205ENST00000594973 A0A1B0GVY2 172 aa9.83□□□□□ -0.84
SHKBP1-205ENST00000594973 MIR22HGQ0VDD5 57 aa9.81□□□□□ -0.84
SHKBP1-205ENST00000594973 Q5W150 140 aa9.8□□□□□ -0.84
SHKBP1-205ENST00000594973 FAT1Q14517 4588 aa9.8□□□□□ -0.84
SHKBP1-205ENST00000594973 UQCR11O14957 56 aa9.79□□□□□ -0.84
SHKBP1-205ENST00000594973 RETNLBQ9BQ08 111 aa9.79□□□□□ -0.84
SHKBP1-205ENST00000594973 APOBP04114 4563 aaKnown RBP9.79□□□□□ -0.84
SHKBP1-205ENST00000594973 TYMSOSQ8TAI1 123 aa9.75□□□□□ -0.85
SHKBP1-205ENST00000594973 CSAG1Q6PB30 78 aa9.71□□□□□ -0.85
SHKBP1-205ENST00000594973 RYR3Q15413 4870 aa9.64□□□□□ -0.87
SHKBP1-205ENST00000594973 SPINK1P00995 79 aa9.63□□□□□ -0.87
SHKBP1-205ENST00000594973 KRTAP10-4P60372 401 aaPredicted RBP9.63□□□□□ -0.87
SHKBP1-205ENST00000594973 FAM229AH3BQW9 127 aa9.62□□□□□ -0.87
SHKBP1-205ENST00000594973 LINC00304Q8N9R0 145 aa9.61□□□□□ -0.87
SHKBP1-205ENST00000594973 IGKV2-30P06310 120 aa9.6□□□□□ -0.87
SHKBP1-205ENST00000594973 PKHD1L1Q86WI1 4243 aa9.52□□□□□ -0.89
SHKBP1-205ENST00000594973 KRTAP16-1A8MUX0 517 aa9.51□□□□□ -0.89
SHKBP1-205ENST00000594973 HSPG2P98160 4391 aa9.49□□□□□ -0.89
SHKBP1-205ENST00000594973 RPS29P62273 56 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-205ENST00000594973 LRP1Q07954 4544 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-205ENST00000594973 KRTAP25-1Q3LHN0 102 aa9.43□□□□□ -0.9
SHKBP1-205ENST00000594973 IGKV2D-30A0A075B6S6 120 aa9.41□□□□□ -0.9
SHKBP1-205ENST00000594973 Q5VSD8 79 aa9.41□□□□□ -0.9
SHKBP1-205ENST00000594973 A8MUU9 505 aa9.39□□□□□ -0.91
SHKBP1-205ENST00000594973 ROMO1P60602 79 aa9.39□□□□□ -0.91
SHKBP1-205ENST00000594973 RYR1P21817 5038 aa9.39□□□□□ -0.91
SHKBP1-205ENST00000594973 C9orf92A6NGG3 77 aa9.37□□□□□ -0.91
SHKBP1-205ENST00000594973 TNXBP22105 4242 aa9.35□□□□□ -0.91
SHKBP1-205ENST00000594973 KIAA1109Q2LD37 5005 aa9.35□□□□□ -0.91
SHKBP1-205ENST00000594973 FLG2Q5D862 2391 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-205ENST00000594973 Q8N1X5 172 aa9.31□□□□□ -0.92
SHKBP1-205ENST00000594973 KRTAP17-1Q9BYP8 105 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms