RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LINC01549A6NIU2 74 aa2.29□□□□□ -2.04
NUP88-213ENST00000576862 ZCCHC13Q8WW36 166 aaKnown RBP2.29□□□□□ -2.04
NUP88-213ENST00000576862 DMAC1Q96GE9 116 aa2.29□□□□□ -2.04
NUP88-213ENST00000576862 AMELXQ99217 191 aa2.29□□□□□ -2.04
NUP88-213ENST00000576862 PRO2289Q9P1D8 64 aa2.29□□□□□ -2.04
NUP88-213ENST00000576862 UBE2D4Q9Y2X8 147 aa2.29□□□□□ -2.04
NUP88-213ENST00000576862 TENM3Q9P273 2699 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 STAB2Q8WWQ8 2551 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 A0A0J9YY99 117 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 MYMXA0A1B0GTQ4 84 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 A0A1W2PNN7 141 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 CHKB-CPT1BH3BT56 60 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 ELOF1P60002 83 aaKnown RBP2.28□□□□□ -2.04
NUP88-213ENST00000576862 TRRAPQ9Y4A5 3859 aa2.28□□□□□ -2.04
NUP88-213ENST00000576862 TRBV6-8A0A0A6YYG3 113 aa2.27□□□□□ -2.05
NUP88-213ENST00000576862 TEX49A0A1B0GTD5 131 aa2.27□□□□□ -2.05
NUP88-213ENST00000576862 K7EIL1 84 aa2.27□□□□□ -2.05
NUP88-213ENST00000576862 SPART-AS1P0CW21 52 aa2.27□□□□□ -2.05
NUP88-213ENST00000576862 PRO0255Q9UI72 69 aa2.27□□□□□ -2.05
NUP88-213ENST00000576862 R4GN34 69 aa2.27□□□□□ -2.05
NUP88-213ENST00000576862 A0A096LPF7 62 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 ZNF815PA8K554 130 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 IGHV3-30P01768 117 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 IGHV3-30-5P0DP03 117 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 HTN3P15516 51 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 COX6A2Q02221 97 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 C20orf197Q8N268 126 aa2.26□□□□□ -2.05
NUP88-213ENST00000576862 NUPR2A6NF83 97 aa2.25□□□□□ -2.05
NUP88-213ENST00000576862 F8WEM9 126 aa2.25□□□□□ -2.05
NUP88-213ENST00000576862 Q6JHZ5 121 aa2.25□□□□□ -2.05
NUP88-213ENST00000576862 CSAG1Q6PB30 78 aa2.25□□□□□ -2.05
NUP88-213ENST00000576862 ORMDL1Q9P0S3 153 aa2.25□□□□□ -2.05
NUP88-213ENST00000576862 CDKN2A-AS1Q9UH64 79 aa2.25□□□□□ -2.05
NUP88-213ENST00000576862 ANK2Q01484 3957 aa2.24□□□□□ -2.05
NUP88-213ENST00000576862 IGKV3OR2-268A0A0C4DH90 116 aa2.24□□□□□ -2.05
NUP88-213ENST00000576862 MEGF8Q7Z7M0 2845 aa2.23□□□□□ -2.05
NUP88-213ENST00000576862 LINC00959A0A1B0GUT2 108 aa2.23□□□□□ -2.05
NUP88-213ENST00000576862 LELP1Q5T871 98 aa2.23□□□□□ -2.05
NUP88-213ENST00000576862 ATP5EP2Q5VTU8 51 aa2.23□□□□□ -2.05
NUP88-213ENST00000576862 CLPSL2Q6UWE3 100 aa2.23□□□□□ -2.05
NUP88-213ENST00000576862 FBN3Q75N90 2809 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 DEFB131BA0A096LNP1 70 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 H3BNG1 76 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 NDUFA1O15239 70 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 WFDC10BQ8IUB3 73 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 ZNF625Q96I27 306 aaPredicted RBP2.22□□□□□ -2.05
NUP88-213ENST00000576862 DNHD1Q96M86 4753 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 DNAH3Q8TD57 4116 aa2.22□□□□□ -2.05
NUP88-213ENST00000576862 ANGP03950 147 aaKnown RBP2.21□□□□□ -2.06
NUP88-213ENST00000576862 ENHOQ6UWT2 76 aa2.21□□□□□ -2.06
NUP88-213ENST00000576862 MUSTN1Q8IVN3 82 aa2.21□□□□□ -2.06
NUP88-213ENST00000576862 COX7B2Q8TF08 81 aa2.21□□□□□ -2.06
NUP88-213ENST00000576862 PDE6GP18545 87 aa2.2□□□□□ -2.06
NUP88-213ENST00000576862 SFTA2Q6UW10 78 aa2.2□□□□□ -2.06
NUP88-213ENST00000576862 TOMM7Q9P0U1 55 aa2.2□□□□□ -2.06
NUP88-213ENST00000576862 IGLV6-57P01721 117 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 HRES1P13985 223 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 SPAG11BQ08648 103 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 LINC01556Q5JQF7 62 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 SPAG11AQ6PDA7 123 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 Q8IZM0 81 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 LINC00308Q8TCZ7 52 aa2.19□□□□□ -2.06
NUP88-213ENST00000576862 HUWE1Q7Z6Z7 4374 aaKnown RBP2.18□□□□□ -2.06
NUP88-213ENST00000576862 CMYA5Q8N3K9 4069 aa2.18□□□□□ -2.06
NUP88-213ENST00000576862 CCL18P55774 89 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 LINC00158P58513 81 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 ATXN8Q156A1 80 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 UNQ6190/PRO20217Q6UXQ8 127 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 APLNQ9ULZ1 77 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 LINC01558Q9Y6Z2 57 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 DNAH9Q9NYC9 4486 aa2.17□□□□□ -2.06
NUP88-213ENST00000576862 GVQW2A0A096LPI5 108 aaPredicted RBP2.16□□□□□ -2.06
NUP88-213ENST00000576862 KRTAP21-3Q3LHN1 58 aa2.16□□□□□ -2.06
NUP88-213ENST00000576862 LINC00846Q9NV44 126 aa2.16□□□□□ -2.06
NUP88-213ENST00000576862 C6orf48Q9UBA6 75 aa2.16□□□□□ -2.06
NUP88-213ENST00000576862 TRBV7-4A0A0J9YYF1 115 aa2.15□□□□□ -2.07
NUP88-213ENST00000576862 TRBV30A0A0K0K1B3 111 aa2.15□□□□□ -2.07
NUP88-213ENST00000576862 JMJD7-PLA2G4BH0Y9G9 81 aa2.15□□□□□ -2.07
NUP88-213ENST00000576862 COX17Q14061 63 aa2.15□□□□□ -2.07
NUP88-213ENST00000576862 PRR15LQ9BU68 103 aa2.14□□□□□ -2.07
NUP88-213ENST00000576862 TENM2Q9NT68 2774 aa2.14□□□□□ -2.07
NUP88-213ENST00000576862 PRKDCP78527 4128 aaKnown RBP2.13□□□□□ -2.07
NUP88-213ENST00000576862 IGKV3D-7A0A0C4DH55 119 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 A0A0G2JQZ4 141 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 NCR3O14931 201 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 UQCR11O14957 56 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 TPRXLQ17RH7 258 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 UBE2DNLQ8IWF7 75 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 SMIM11BQ8TCY0 68 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 PLAC8Q9NZF1 115 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 COL7A1Q02388 2944 aa2.13□□□□□ -2.07
NUP88-213ENST00000576862 NBDYA0A0U1RRE5 68 aa2.12□□□□□ -2.07
NUP88-213ENST00000576862 DNAL4O96015 105 aa2.12□□□□□ -2.07
NUP88-213ENST00000576862 DYNC2H1Q8NCM8 4307 aaKnown RBP2.11□□□□□ -2.07
NUP88-213ENST00000576862 NDUFB1O75438 58 aa2.11□□□□□ -2.07
NUP88-213ENST00000576862 Q6ZRN7 208 aaPredicted RBP2.11□□□□□ -2.07
NUP88-213ENST00000576862 SPACA4Q8TDM5 124 aa2.11□□□□□ -2.07
NUP88-213ENST00000576862 SPRR4Q96PI1 79 aa2.11□□□□□ -2.07
NUP88-213ENST00000576862 M0R2N4 97 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms