RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ALMS1Q8TCU4 4167 aa5.94□□□□□ -1.46
CCDC40-212ENST00000574799 A0A1B0GU69 56 aa5.93□□□□□ -1.46
CCDC40-212ENST00000574799 UBE2DNLQ8IWF7 75 aa5.93□□□□□ -1.46
CCDC40-212ENST00000574799 CHTF8P0CG12 524 aa5.93□□□□□ -1.46
CCDC40-212ENST00000574799 FAT2Q9NYQ8 4349 aa5.93□□□□□ -1.46
CCDC40-212ENST00000574799 DNAH10OSP0CZ25 163 aa5.92□□□□□ -1.46
CCDC40-212ENST00000574799 LINC00472Q9H8W2 130 aa5.92□□□□□ -1.46
CCDC40-212ENST00000574799 DNAH5Q8TE73 4624 aa5.92□□□□□ -1.46
CCDC40-212ENST00000574799 C8orf17Q9NRJ1 99 aa5.92□□□□□ -1.46
CCDC40-212ENST00000574799 LINC01554Q52M75 96 aa5.91□□□□□ -1.46
CCDC40-212ENST00000574799 KRTAP7-1Q8IUC3 87 aa5.91□□□□□ -1.46
CCDC40-212ENST00000574799 SRRM2Q9UQ35 2752 aaKnown RBP5.91□□□□□ -1.46
CCDC40-212ENST00000574799 ADM2Q7Z4H4 148 aa5.9□□□□□ -1.46
CCDC40-212ENST00000574799 ACYP2P14621 99 aa5.9□□□□□ -1.46
CCDC40-212ENST00000574799 KRTAP1-5Q9BYS1 174 aa5.9□□□□□ -1.46
CCDC40-212ENST00000574799 RETNLBQ9BQ08 111 aa5.89□□□□□ -1.47
CCDC40-212ENST00000574799 IGLV8-61A0A075B6I0 122 aa5.89□□□□□ -1.47
CCDC40-212ENST00000574799 MRPL34Q9BQ48 92 aaKnown RBP5.89□□□□□ -1.47
CCDC40-212ENST00000574799 A0A1B0GVX0 72 aa5.85□□□□□ -1.47
CCDC40-212ENST00000574799 MIR22HGQ0VDD5 57 aa5.84□□□□□ -1.47
CCDC40-212ENST00000574799 UQCR11O14957 56 aa5.82□□□□□ -1.48
CCDC40-212ENST00000574799 C14orf177Q52M58 125 aa5.82□□□□□ -1.48
CCDC40-212ENST00000574799 APLNQ9ULZ1 77 aa5.8□□□□□ -1.48
CCDC40-212ENST00000574799 SPINK1P00995 79 aa5.8□□□□□ -1.48
CCDC40-212ENST00000574799 TGP01266 2768 aa5.8□□□□□ -1.48
CCDC40-212ENST00000574799 CSAG1Q6PB30 78 aa5.8□□□□□ -1.48
CCDC40-212ENST00000574799 Q6ZR54 194 aa5.8□□□□□ -1.48
CCDC40-212ENST00000574799 PKHD1P08F94 4074 aa5.79□□□□□ -1.48
CCDC40-212ENST00000574799 ANAPC11Q9NYG5 84 aa5.79□□□□□ -1.48
CCDC40-212ENST00000574799 CIRBP-AS1Q8TBR5 109 aa5.78□□□□□ -1.48
CCDC40-212ENST00000574799 SPRR1BP22528 89 aa5.78□□□□□ -1.48
CCDC40-212ENST00000574799 PLAC8Q9NZF1 115 aa5.78□□□□□ -1.48
CCDC40-212ENST00000574799 PLA2G1BP04054 148 aaKnown RBP5.77□□□□□ -1.49
CCDC40-212ENST00000574799 KRTAP11-1Q8IUC1 163 aa5.77□□□□□ -1.49
CCDC40-212ENST00000574799 ZNF706Q9Y5V0 76 aaPredicted RBP5.77□□□□□ -1.49
CCDC40-212ENST00000574799 SACSQ9NZJ4 4579 aa5.76□□□□□ -1.49
CCDC40-212ENST00000574799 A0A087X002 238 aa5.76□□□□□ -1.49
CCDC40-212ENST00000574799 NOTCH2NLQ7Z3S9 236 aa5.76□□□□□ -1.49
CCDC40-212ENST00000574799 IGKV2D-30A0A075B6S6 120 aa5.75□□□□□ -1.49
CCDC40-212ENST00000574799 IGKV2-30P06310 120 aa5.75□□□□□ -1.49
CCDC40-212ENST00000574799 Q6ZRN7 208 aaPredicted RBP5.75□□□□□ -1.49
CCDC40-212ENST00000574799 LRP1BQ9NZR2 4599 aa5.73□□□□□ -1.49
CCDC40-212ENST00000574799 Q5W150 140 aa5.73□□□□□ -1.49
CCDC40-212ENST00000574799 VPS13BQ7Z7G8 4022 aa5.72□□□□□ -1.49
CCDC40-212ENST00000574799 Q96NJ1 140 aa5.7□□□□□ -1.5
CCDC40-212ENST00000574799 PANO1I0J062 215 aa5.69□□□□□ -1.5
CCDC40-212ENST00000574799 SPATA8Q6RVD6 105 aa5.69□□□□□ -1.5
CCDC40-212ENST00000574799 RTL8CO15255 209 aa5.69□□□□□ -1.5
CCDC40-212ENST00000574799 FAM229AH3BQW9 127 aa5.69□□□□□ -1.5
CCDC40-212ENST00000574799 C1orf134Q5TEV5 83 aa5.68□□□□□ -1.5
CCDC40-212ENST00000574799 DMAC1Q96GE9 116 aa5.66□□□□□ -1.5
CCDC40-212ENST00000574799 ASB16-AS1Q495Z4 193 aa5.66□□□□□ -1.5
CCDC40-212ENST00000574799 FLG2Q5D862 2391 aaPredicted RBP5.65□□□□□ -1.51
CCDC40-212ENST00000574799 KMT2CQ8NEZ4 4911 aaKnown RBP5.65□□□□□ -1.51
CCDC40-212ENST00000574799 NBDYA0A0U1RRE5 68 aa5.63□□□□□ -1.51
CCDC40-212ENST00000574799 WWC2-AS2Q96NR7 200 aa5.62□□□□□ -1.51
CCDC40-212ENST00000574799 PSORS1C2Q9UIG4 136 aa5.62□□□□□ -1.51
CCDC40-212ENST00000574799 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.62□□□□□ -1.51
CCDC40-212ENST00000574799 K7ERS5 55 aa5.6□□□□□ -1.51
CCDC40-212ENST00000574799 ZNF861PO60384 105 aa5.6□□□□□ -1.51
CCDC40-212ENST00000574799 RYR2Q92736 4967 aa5.59□□□□□ -1.51
CCDC40-212ENST00000574799 KRTAP13-1Q8IUC0 172 aa5.58□□□□□ -1.52
CCDC40-212ENST00000574799 NUPR2A6NF83 97 aa5.58□□□□□ -1.52
CCDC40-212ENST00000574799 Q8N1X5 172 aa5.58□□□□□ -1.52
CCDC40-212ENST00000574799 CRIPTQ9P021 101 aa5.58□□□□□ -1.52
CCDC40-212ENST00000574799 SSBP3-AS1Q7Z2R9 100 aa5.56□□□□□ -1.52
CCDC40-212ENST00000574799 SPACA4Q8TDM5 124 aa5.56□□□□□ -1.52
CCDC40-212ENST00000574799 LINC00483Q53H64 154 aa5.55□□□□□ -1.52
CCDC40-212ENST00000574799 APOBP04114 4563 aaKnown RBP5.55□□□□□ -1.52
CCDC40-212ENST00000574799 IGLV5-52A0A0A0MRZ9 124 aa5.54□□□□□ -1.52
CCDC40-212ENST00000574799 IGLV7-43P04211 117 aa5.54□□□□□ -1.52
CCDC40-212ENST00000574799 A0A087WTM6 91 aa5.53□□□□□ -1.52
CCDC40-212ENST00000574799 DYNC1H1Q14204 4646 aaKnown RBP5.53□□□□□ -1.52
CCDC40-212ENST00000574799 RYR3Q15413 4870 aa5.52□□□□□ -1.53
CCDC40-212ENST00000574799 DMBT1Q9UGM3 2413 aaPredicted RBP5.51□□□□□ -1.53
CCDC40-212ENST00000574799 PKHD1L1Q86WI1 4243 aa5.5□□□□□ -1.53
CCDC40-212ENST00000574799 SPINT4Q6UDR6 99 aa5.5□□□□□ -1.53
CCDC40-212ENST00000574799 ROMO1P60602 79 aa5.49□□□□□ -1.53
CCDC40-212ENST00000574799 KRTAP25-1Q3LHN0 102 aa5.49□□□□□ -1.53
CCDC40-212ENST00000574799 KRTAP13-3Q3SY46 172 aa5.49□□□□□ -1.53
CCDC40-212ENST00000574799 A0A1B0GU33 70 aa5.47□□□□□ -1.53
CCDC40-212ENST00000574799 LY6G6CO95867 125 aa5.47□□□□□ -1.53
CCDC40-212ENST00000574799 KRTAP10-2P60368 255 aa5.46□□□□□ -1.54
CCDC40-212ENST00000574799 KRTAP21-3Q3LHN1 58 aa5.45□□□□□ -1.54
CCDC40-212ENST00000574799 FAT1Q14517 4588 aa5.45□□□□□ -1.54
CCDC40-212ENST00000574799 LINC00304Q8N9R0 145 aa5.42□□□□□ -1.54
CCDC40-212ENST00000574799 A8MUU9 505 aa5.4□□□□□ -1.54
CCDC40-212ENST00000574799 Q6ZSA8 131 aa5.39□□□□□ -1.55
CCDC40-212ENST00000574799 H0YAA0 97 aa5.38□□□□□ -1.55
CCDC40-212ENST00000574799 TNXBP22105 4242 aa5.37□□□□□ -1.55
CCDC40-212ENST00000574799 TYMSOSQ8TAI1 123 aa5.37□□□□□ -1.55
CCDC40-212ENST00000574799 HSPG2P98160 4391 aa5.37□□□□□ -1.55
CCDC40-212ENST00000574799 KRTAP10-1P60331 282 aa5.36□□□□□ -1.55
CCDC40-212ENST00000574799 H1FX-AS1Q4G0G2 97 aa5.35□□□□□ -1.55
CCDC40-212ENST00000574799 A0A0D9SG42 100 aa5.35□□□□□ -1.55
CCDC40-212ENST00000574799 C9orf92A6NGG3 77 aa5.32□□□□□ -1.56
CCDC40-212ENST00000574799 LRP1Q07954 4544 aaKnown RBP5.31□□□□□ -1.56
CCDC40-212ENST00000574799 KRTAP16-1A8MUX0 517 aa5.28□□□□□ -1.56
CCDC40-212ENST00000574799 KRTAP13-2Q52LG2 175 aa5.28□□□□□ -1.56
CCDC40-212ENST00000574799 EPPK1P58107 5090 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms