RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 A0A1B0GVX0 72 aa7.72□□□□□ -1.17
CCDC40-209ENST00000573474 A0A087WVE0 104 aa7.7□□□□□ -1.18
CCDC40-209ENST00000573474 J3QL48 77 aa7.7□□□□□ -1.18
CCDC40-209ENST00000573474 DMBT1Q9UGM3 2413 aaPredicted RBP7.69□□□□□ -1.18
CCDC40-209ENST00000573474 IGHV6-1A0A0B4J1U7 121 aa7.69□□□□□ -1.18
CCDC40-209ENST00000573474 RETNLBQ9BQ08 111 aa7.68□□□□□ -1.18
CCDC40-209ENST00000573474 C8orf87E5RJ46 101 aa7.66□□□□□ -1.18
CCDC40-209ENST00000573474 HCG22E2RYF7 251 aa7.65□□□□□ -1.18
CCDC40-209ENST00000573474 FP248Q71RG6 208 aaPredicted RBP7.65□□□□□ -1.18
CCDC40-209ENST00000573474 C8orf17Q9NRJ1 99 aa7.65□□□□□ -1.18
CCDC40-209ENST00000573474 MMP24-AS1A0A0U1RRL7 71 aa7.64□□□□□ -1.19
CCDC40-209ENST00000573474 FAM236AA0A1B0GUQ0 79 aa7.63□□□□□ -1.19
CCDC40-209ENST00000573474 FAM236BA0A1B0GV22 79 aa7.63□□□□□ -1.19
CCDC40-209ENST00000573474 SCGB1A1P11684 91 aa7.63□□□□□ -1.19
CCDC40-209ENST00000573474 LINC00313P59037 77 aa7.63□□□□□ -1.19
CCDC40-209ENST00000573474 CASC2Q6XLA1 102 aa7.62□□□□□ -1.19
CCDC40-209ENST00000573474 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
CCDC40-209ENST00000573474 hDV103S1A0JD37 113 aa7.61□□□□□ -1.19
CCDC40-209ENST00000573474 WFDC13Q8IUB5 93 aa7.61□□□□□ -1.19
CCDC40-209ENST00000573474 IGLV7-46A0A075B6I9 117 aa7.58□□□□□ -1.2
CCDC40-209ENST00000573474 TMEM254Q8TBM7 123 aa7.58□□□□□ -1.2
CCDC40-209ENST00000573474 PRR4Q16378 134 aa7.56□□□□□ -1.2
CCDC40-209ENST00000573474 MRPL34Q9BQ48 92 aaKnown RBP7.56□□□□□ -1.2
CCDC40-209ENST00000573474 ATOX1O00244 68 aa7.55□□□□□ -1.2
CCDC40-209ENST00000573474 C9orf92A6NGG3 77 aa7.53□□□□□ -1.2
CCDC40-209ENST00000573474 KRTAP16-1A8MUX0 517 aa7.53□□□□□ -1.2
CCDC40-209ENST00000573474 PCLOQ9Y6V0 5065 aa7.52□□□□□ -1.21
CCDC40-209ENST00000573474 SMIM20Q8N5G0 67 aa7.52□□□□□ -1.21
CCDC40-209ENST00000573474 KRTAP13-3Q3SY46 172 aa7.5□□□□□ -1.21
CCDC40-209ENST00000573474 NDUFS5O43920 106 aa7.49□□□□□ -1.21
CCDC40-209ENST00000573474 Q8N9P0 234 aaPredicted RBP7.49□□□□□ -1.21
CCDC40-209ENST00000573474 OCR1Q9BZK8 76 aa7.48□□□□□ -1.21
CCDC40-209ENST00000573474 TP53AIP1Q9HCN2 124 aa7.48□□□□□ -1.21
CCDC40-209ENST00000573474 TRAV7A0A075B6U4 112 aa7.47□□□□□ -1.21
CCDC40-209ENST00000573474 ANAPC13Q9BS18 74 aa7.47□□□□□ -1.21
CCDC40-209ENST00000573474 TPRXLQ17RH7 258 aa7.46□□□□□ -1.22
CCDC40-209ENST00000573474 UQCRQO14949 82 aa7.45□□□□□ -1.22
CCDC40-209ENST00000573474 SERP2Q8N6R1 65 aa7.45□□□□□ -1.22
CCDC40-209ENST00000573474 C20orf166-AS1Q96NR2 134 aa7.45□□□□□ -1.22
CCDC40-209ENST00000573474 A8MUU9 505 aa7.44□□□□□ -1.22
CCDC40-209ENST00000573474 XP32Q5T750 250 aa7.41□□□□□ -1.22
CCDC40-209ENST00000573474 Q75L30 129 aa7.41□□□□□ -1.22
CCDC40-209ENST00000573474 COX7CP15954 63 aa7.39□□□□□ -1.23
CCDC40-209ENST00000573474 C5orf47Q569G3 176 aa7.39□□□□□ -1.23
CCDC40-209ENST00000573474 TRAV22A0A0B4J277 110 aa7.36□□□□□ -1.23
CCDC40-209ENST00000573474 H0Y9P7 68 aa7.36□□□□□ -1.23
CCDC40-209ENST00000573474 RPL37P61927 97 aaKnown RBP7.36□□□□□ -1.23
CCDC40-209ENST00000573474 Q5W150 140 aa7.36□□□□□ -1.23
CCDC40-209ENST00000573474 ZCCHC13Q8WW36 166 aaKnown RBP7.36□□□□□ -1.23
CCDC40-209ENST00000573474 MP68P56378 58 aa7.35□□□□□ -1.23
CCDC40-209ENST00000573474 PCP4P48539 62 aa7.34□□□□□ -1.23
CCDC40-209ENST00000573474 HERC1Q15751 4861 aa7.33□□□□□ -1.24
CCDC40-209ENST00000573474 ATP11AUNQ6ZP68 121 aa7.33□□□□□ -1.24
CCDC40-209ENST00000573474 H3BPC8 53 aa7.32□□□□□ -1.24
CCDC40-209ENST00000573474 LPAP08519 4548 aa7.3□□□□□ -1.24
CCDC40-209ENST00000573474 C20orf197Q8N268 126 aa7.3□□□□□ -1.24
CCDC40-209ENST00000573474 LINC00208Q96KT6 92 aa7.3□□□□□ -1.24
CCDC40-209ENST00000573474 A0A0U1RQV1 116 aa7.29□□□□□ -1.24
CCDC40-209ENST00000573474 CCDC179H3BU77 68 aa7.29□□□□□ -1.24
CCDC40-209ENST00000573474 C1orf64Q8NEQ6 169 aa7.29□□□□□ -1.24
CCDC40-209ENST00000573474 LOC101927531A0A1B0GV80 90 aa7.26□□□□□ -1.25
CCDC40-209ENST00000573474 SNURFQ9Y675 71 aa7.26□□□□□ -1.25
CCDC40-209ENST00000573474 HMCN2Q8NDA2 5059 aa7.26□□□□□ -1.25
CCDC40-209ENST00000573474 KLKP1Q107X0 134 aa7.25□□□□□ -1.25
CCDC40-209ENST00000573474 IGKV2-30P06310 120 aa7.24□□□□□ -1.25
CCDC40-209ENST00000573474 LRP2P98164 4655 aa7.23□□□□□ -1.25
CCDC40-209ENST00000573474 SEC61BP60468 96 aaKnown RBP7.23□□□□□ -1.25
CCDC40-209ENST00000573474 PCOTHQ58A44 107 aa7.23□□□□□ -1.25
CCDC40-209ENST00000573474 IGKV2D-30A0A075B6S6 120 aa7.22□□□□□ -1.25
CCDC40-209ENST00000573474 CYP4F30PQ9H0H9 118 aa7.22□□□□□ -1.25
CCDC40-209ENST00000573474 C7orf65Q6ZTY9 151 aa7.2□□□□□ -1.26
CCDC40-209ENST00000573474 NDUFC1O43677 76 aa7.18□□□□□ -1.26
CCDC40-209ENST00000573474 SPINK7P58062 85 aa7.18□□□□□ -1.26
CCDC40-209ENST00000573474 CYSTM1Q9H1C7 97 aa7.17□□□□□ -1.26
CCDC40-209ENST00000573474 MUC17Q685J3 4493 aa7.16□□□□□ -1.26
CCDC40-209ENST00000573474 H7BZZ5 65 aa7.13□□□□□ -1.27
CCDC40-209ENST00000573474 HRES1P13985 223 aa7.09□□□□□ -1.27
CCDC40-209ENST00000573474 SPANXA2-OT1Q8N9U9 137 aa7.07□□□□□ -1.28
CCDC40-209ENST00000573474 TMEM258P61165 79 aa7.04□□□□□ -1.28
CCDC40-209ENST00000573474 KRTAP4-1Q9BYQ7 146 aa7.04□□□□□ -1.28
CCDC40-209ENST00000573474 C4orf26Q17RF5 130 aa7.03□□□□□ -1.28
CCDC40-209ENST00000573474 FAM236DA0A1B0GTK5 79 aa7□□□□□ -1.29
CCDC40-209ENST00000573474 FAM236CP0DP71 79 aa7□□□□□ -1.29
CCDC40-209ENST00000573474 ATP5EP56381 51 aaPredicted RBP7□□□□□ -1.29
CCDC40-209ENST00000573474 COX6B2Q6YFQ2 88 aa6.98□□□□□ -1.29
CCDC40-209ENST00000573474 MPLKIPQ8TAP9 179 aa6.98□□□□□ -1.29
CCDC40-209ENST00000573474 RBM12B-AS1Q9P1G2 102 aa6.97□□□□□ -1.29
CCDC40-209ENST00000573474 DMAC1Q96GE9 116 aa6.96□□□□□ -1.3
CCDC40-209ENST00000573474 A8MUN3 132 aa6.95□□□□□ -1.3
CCDC40-209ENST00000573474 KRTAP3-1Q9BYR8 98 aa6.94□□□□□ -1.3
CCDC40-209ENST00000573474 ACYP2P14621 99 aa6.92□□□□□ -1.3
CCDC40-209ENST00000573474 UBR4Q5T4S7 5183 aa6.88□□□□□ -1.31
CCDC40-209ENST00000573474 H1FX-AS1Q4G0G2 97 aa6.86□□□□□ -1.31
CCDC40-209ENST00000573474 RNF213Q63HN8 5207 aa6.86□□□□□ -1.31
CCDC40-209ENST00000573474 COA5Q86WW8 74 aa6.84□□□□□ -1.31
CCDC40-209ENST00000573474 KRTAP19-2Q3LHN2 52 aa6.83□□□□□ -1.32
CCDC40-209ENST00000573474 SERP1Q9Y6X1 66 aa6.83□□□□□ -1.32
CCDC40-209ENST00000573474 MUC2Q02817 5179 aa6.83□□□□□ -1.32
CCDC40-209ENST00000573474 CHKB-CPT1BH3BT56 60 aa6.8□□□□□ -1.32
CCDC40-209ENST00000573474 RPS28P62857 69 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms