RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 LOC107984640A0A0U1RRK4 108 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 F8WEM9 126 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 LYPD5Q6UWN5 251 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 Q6ZQT0 140 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 Q6ZQY7 126 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 PHF5AQ7RTV0 110 aaKnown RBP1.83□□□□□ -2.12
LINC00560-201ENST00000564593 C3orf56Q8N813 242 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 CSMD1Q96PZ7 3565 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 DEFB131BA0A096LNP1 70 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 IGKV3D-7A0A0C4DH55 119 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 ETDCA0A1B0GVM5 59 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 ERC2-IT1O76042 136 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 HAMPP81172 84 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 UNQ6190/PRO20217Q6UXQ8 127 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 PRO2289Q9P1D8 64 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 C6orf48Q9UBA6 75 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 NOTCH1P46531 2555 aa1.82□□□□□ -2.12
LINC00560-201ENST00000564593 TRBV7-4A0A0J9YYF1 115 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 DEFB4AO15263 64 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 UBE2BP63146 152 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 C9orf116Q5BN46 136 aaPredicted RBP1.81□□□□□ -2.12
LINC00560-201ENST00000564593 ENHOQ6UWT2 76 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 C22orf24Q9Y442 160 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 NBEAL1Q6ZS30 2694 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 NBEAL2Q6ZNJ1 2754 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 KLKP1Q107X0 134 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 NREPQ16612 68 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 TPRXLQ17RH7 258 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 KRTAP13-4Q3LI77 160 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 Q6ZRX8 168 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 WFDC10BQ8IUB3 73 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 KCNQ1DNQ9H478 68 aa1.81□□□□□ -2.12
LINC00560-201ENST00000564593 COL6A5A8TX70 2615 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 F8P00451 2351 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 UBR4Q5T4S7 5183 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 STAB1Q9NY15 2570 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 HIVEP1P15822 2718 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 NDUFB1O75438 58 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 SMR3AQ99954 134 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 LINC00474Q9P2X8 69 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 SERP1Q9Y6X1 66 aa1.8□□□□□ -2.12
LINC00560-201ENST00000564593 PCLOQ9Y6V0 5065 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 VWFP04275 2813 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 IGLV5-48A0A075B6I7 105 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 A0A087WVE0 104 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 C20orf197Q8N268 126 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 SVEP1Q4LDE5 3571 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 VPS13CQ709C8 3753 aa1.79□□□□□ -2.12
LINC00560-201ENST00000564593 ESRGQ1W209 222 aa1.78□□□□□ -2.12
LINC00560-201ENST00000564593 C1orf137Q5JT78 98 aa1.78□□□□□ -2.12
LINC00560-201ENST00000564593 KRTAP26-1Q6PEX3 210 aa1.78□□□□□ -2.12
LINC00560-201ENST00000564593 UBE2DNLQ8IWF7 75 aa1.78□□□□□ -2.12
LINC00560-201ENST00000564593 TENM1Q9UKZ4 2725 aa1.78□□□□□ -2.12
LINC00560-201ENST00000564593 OTOGQ6ZRI0 2925 aa1.78□□□□□ -2.12
LINC00560-201ENST00000564593 PKD1L1Q8TDX9 2849 aa1.78□□□□□ -2.13
LINC00560-201ENST00000564593 NUPR2A6NF83 97 aa1.77□□□□□ -2.13
LINC00560-201ENST00000564593 SPRR1AP35321 89 aa1.77□□□□□ -2.13
LINC00560-201ENST00000564593 CNBPP62633 177 aaKnown RBP1.77□□□□□ -2.13
LINC00560-201ENST00000564593 TMEM254Q8TBM7 123 aa1.77□□□□□ -2.13
LINC00560-201ENST00000564593 DPH3Q96FX2 82 aa1.77□□□□□ -2.13
LINC00560-201ENST00000564593 CSMD2Q7Z408 3487 aa1.77□□□□□ -2.13
LINC00560-201ENST00000564593 SPRR4Q96PI1 79 aa1.76□□□□□ -2.13
LINC00560-201ENST00000564593 BIRC6Q9NR09 4857 aa1.76□□□□□ -2.13
LINC00560-201ENST00000564593 H7BZZ5 65 aa1.76□□□□□ -2.13
LINC00560-201ENST00000564593 RPL37AP61513 92 aaKnown RBP1.76□□□□□ -2.13
LINC00560-201ENST00000564593 DEFB105AQ8NG35 78 aa1.76□□□□□ -2.13
LINC00560-201ENST00000564593 AKAP9Q99996 3911 aa1.75□□□□□ -2.13
LINC00560-201ENST00000564593 NBPF19A0A087WUL8 3843 aa1.75□□□□□ -2.13
LINC00560-201ENST00000564593 HCG22E2RYF7 251 aa1.75□□□□□ -2.13
LINC00560-201ENST00000564593 SPACA4Q8TDM5 124 aa1.75□□□□□ -2.13
LINC00560-201ENST00000564593 hDV103S1A0JD37 113 aa1.74□□□□□ -2.13
LINC00560-201ENST00000564593 C7orf65Q6ZTY9 151 aa1.74□□□□□ -2.13
LINC00560-201ENST00000564593 BRK1Q8WUW1 75 aa1.74□□□□□ -2.13
LINC00560-201ENST00000564593 TENM3Q9P273 2699 aa1.74□□□□□ -2.13
LINC00560-201ENST00000564593 LCE6AA0A183 80 aa1.73□□□□□ -2.13
LINC00560-201ENST00000564593 SPRR1BP22528 89 aa1.73□□□□□ -2.13
LINC00560-201ENST00000564593 TP53AIP1Q9HCN2 124 aa1.73□□□□□ -2.13
LINC00560-201ENST00000564593 SNURFQ9Y675 71 aa1.73□□□□□ -2.13
LINC00560-201ENST00000564593 STAB2Q8WWQ8 2551 aa1.73□□□□□ -2.13
LINC00560-201ENST00000564593 RYR3Q15413 4870 aa1.73□□□□□ -2.13
LINC00560-201ENST00000564593 ZNF469Q96JG9 3925 aaPredicted RBP1.73□□□□□ -2.13
LINC00560-201ENST00000564593 A0A096LNI7 61 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 K7EIL1 84 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 MGAM2Q2M2H8 2515 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 A0A087WSZ3 146 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 NBDYA0A0U1RRE5 68 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 M0R2N4 97 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 PRLHP81277 87 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 CASC2Q6XLA1 102 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 Q6ZRN7 208 aaPredicted RBP1.72□□□□□ -2.13
LINC00560-201ENST00000564593 C9orf163Q8N9P6 203 aa1.72□□□□□ -2.13
LINC00560-201ENST00000564593 TRAV22A0A0B4J277 110 aa1.71□□□□□ -2.14
LINC00560-201ENST00000564593 K7EQZ3 153 aa1.71□□□□□ -2.14
LINC00560-201ENST00000564593 CYP4F30PQ9H0H9 118 aa1.71□□□□□ -2.14
LINC00560-201ENST00000564593 CYSTM1Q9H1C7 97 aa1.71□□□□□ -2.14
LINC00560-201ENST00000564593 H0Y9P7 68 aa1.7□□□□□ -2.14
LINC00560-201ENST00000564593 ROMO1P60602 79 aa1.7□□□□□ -2.14
LINC00560-201ENST00000564593 APLNQ9ULZ1 77 aa1.7□□□□□ -2.14
LINC00560-201ENST00000564593 HYDINQ4G0P3 5121 aa1.7□□□□□ -2.14
LINC00560-201ENST00000564593 Q1T7F1 81 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms