RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 CFAP47Q6ZTR5 3102 aa4.57□□□□□ -1.68
TCF4-216ENST00000562680 DSCR10P59022 87 aa4.57□□□□□ -1.68
TCF4-216ENST00000562680 ADM2Q7Z4H4 148 aa4.57□□□□□ -1.68
TCF4-216ENST00000562680 PANO1I0J062 215 aa4.55□□□□□ -1.68
TCF4-216ENST00000562680 OTOGQ6ZRI0 2925 aa4.55□□□□□ -1.68
TCF4-216ENST00000562680 KRTAP25-1Q3LHN0 102 aa4.54□□□□□ -1.68
TCF4-216ENST00000562680 NOTCH2NLQ7Z3S9 236 aa4.54□□□□□ -1.68
TCF4-216ENST00000562680 ZCCHC13Q8WW36 166 aaKnown RBP4.54□□□□□ -1.68
TCF4-216ENST00000562680 LINC00472Q9H8W2 130 aa4.53□□□□□ -1.68
TCF4-216ENST00000562680 CAMK2N1Q7Z7J9 78 aa4.53□□□□□ -1.68
TCF4-216ENST00000562680 Q5VSD8 79 aa4.51□□□□□ -1.69
TCF4-216ENST00000562680 NDUFAF8A1L188 74 aa4.51□□□□□ -1.69
TCF4-216ENST00000562680 KRTAP7-1Q8IUC3 87 aa4.51□□□□□ -1.69
TCF4-216ENST00000562680 SPATA8Q6RVD6 105 aa4.51□□□□□ -1.69
TCF4-216ENST00000562680 KRTAP13-1Q8IUC0 172 aa4.5□□□□□ -1.69
TCF4-216ENST00000562680 HRES1P13985 223 aa4.49□□□□□ -1.69
TCF4-216ENST00000562680 RPS29P62273 56 aaKnown RBP4.49□□□□□ -1.69
TCF4-216ENST00000562680 MMP24-AS1A0A0U1RRL7 71 aa4.49□□□□□ -1.69
TCF4-216ENST00000562680 RELNP78509 3460 aa4.48□□□□□ -1.69
TCF4-216ENST00000562680 C9orf92A6NGG3 77 aa4.48□□□□□ -1.69
TCF4-216ENST00000562680 Q6ZSA8 131 aa4.47□□□□□ -1.69
TCF4-216ENST00000562680 TENM1Q9UKZ4 2725 aa4.46□□□□□ -1.7
TCF4-216ENST00000562680 KRTAP11-1Q8IUC1 163 aa4.45□□□□□ -1.7
TCF4-216ENST00000562680 DMDP11532 3685 aa4.45□□□□□ -1.7
TCF4-216ENST00000562680 TENM3Q9P273 2699 aa4.45□□□□□ -1.7
TCF4-216ENST00000562680 C20orf166-AS1Q96NR2 134 aa4.43□□□□□ -1.7
TCF4-216ENST00000562680 LAMA5O15230 3695 aa4.42□□□□□ -1.7
TCF4-216ENST00000562680 Q8N1X5 172 aa4.39□□□□□ -1.71
TCF4-216ENST00000562680 WDFY3Q8IZQ1 3526 aa4.38□□□□□ -1.71
TCF4-216ENST00000562680 COX6B2Q6YFQ2 88 aa4.38□□□□□ -1.71
TCF4-216ENST00000562680 ANK3Q12955 4377 aaKnown RBP4.38□□□□□ -1.71
TCF4-216ENST00000562680 CELSR1Q9NYQ6 3014 aa4.38□□□□□ -1.71
TCF4-216ENST00000562680 KRTAP29-1A8MX34 341 aaPredicted RBP4.37□□□□□ -1.71
TCF4-216ENST00000562680 ZFHX4Q86UP3 3567 aa4.37□□□□□ -1.71
TCF4-216ENST00000562680 A0A1B0GU33 70 aa4.36□□□□□ -1.71
TCF4-216ENST00000562680 A8MUU9 505 aa4.36□□□□□ -1.71
TCF4-216ENST00000562680 KRTAP13-2Q52LG2 175 aa4.36□□□□□ -1.71
TCF4-216ENST00000562680 DMBT1Q9UGM3 2413 aaPredicted RBP4.36□□□□□ -1.71
TCF4-216ENST00000562680 VWFP04275 2813 aa4.34□□□□□ -1.71
TCF4-216ENST00000562680 Q5W150 140 aa4.34□□□□□ -1.71
TCF4-216ENST00000562680 A0A0D9SG42 100 aa4.33□□□□□ -1.72
TCF4-216ENST00000562680 ASPMQ8IZT6 3477 aa4.33□□□□□ -1.72
TCF4-216ENST00000562680 BSNQ9UPA5 3926 aa4.3□□□□□ -1.72
TCF4-216ENST00000562680 FBN1P35555 2871 aaKnown RBP4.29□□□□□ -1.72
TCF4-216ENST00000562680 KRTAP1-4P0C5Y4 121 aa4.29□□□□□ -1.72
TCF4-216ENST00000562680 TENM2Q9NT68 2774 aa4.28□□□□□ -1.72
TCF4-216ENST00000562680 A0A1B0GVY2 172 aa4.28□□□□□ -1.72
TCF4-216ENST00000562680 NBPF19A0A087WUL8 3843 aa4.27□□□□□ -1.73
TCF4-216ENST00000562680 SMG1Q96Q15 3661 aaKnown RBP4.26□□□□□ -1.73
TCF4-216ENST00000562680 FLG2Q5D862 2391 aaPredicted RBP4.24□□□□□ -1.73
TCF4-216ENST00000562680 RPL37P61927 97 aaKnown RBP4.2□□□□□ -1.74
TCF4-216ENST00000562680 S4R3F8 94 aa4.2□□□□□ -1.74
TCF4-216ENST00000562680 TGP01266 2768 aa4.2□□□□□ -1.74
TCF4-216ENST00000562680 H1FX-AS1Q4G0G2 97 aa4.2□□□□□ -1.74
TCF4-216ENST00000562680 SPENQ96T58 3664 aaKnown RBP4.18□□□□□ -1.74
TCF4-216ENST00000562680 PKD1L1Q8TDX9 2849 aa4.16□□□□□ -1.74
TCF4-216ENST00000562680 ZFHX3Q15911 3703 aa4.15□□□□□ -1.74
TCF4-216ENST00000562680 FBN3Q75N90 2809 aa4.15□□□□□ -1.75
TCF4-216ENST00000562680 P0C880 135 aa4.13□□□□□ -1.75
TCF4-216ENST00000562680 KRTAP10-8P60410 259 aa4.13□□□□□ -1.75
TCF4-216ENST00000562680 TPRXLQ17RH7 258 aa4.12□□□□□ -1.75
TCF4-216ENST00000562680 CSMD1Q96PZ7 3565 aa4.12□□□□□ -1.75
TCF4-216ENST00000562680 M0R2T5 61 aa4.11□□□□□ -1.75
TCF4-216ENST00000562680 R4GN34 69 aa4.1□□□□□ -1.75
TCF4-216ENST00000562680 PLAC4Q8WY50 150 aa4.09□□□□□ -1.76
TCF4-216ENST00000562680 XP32Q5T750 250 aa4.08□□□□□ -1.76
TCF4-216ENST00000562680 CSMD2Q7Z408 3487 aa4.07□□□□□ -1.76
TCF4-216ENST00000562680 TRRAPQ9Y4A5 3859 aa4.06□□□□□ -1.76
TCF4-216ENST00000562680 KRTAP13-3Q3SY46 172 aa4.05□□□□□ -1.76
TCF4-216ENST00000562680 M0QZ58 72 aa4.03□□□□□ -1.76
TCF4-216ENST00000562680 SVEP1Q4LDE5 3571 aa4.01□□□□□ -1.77
TCF4-216ENST00000562680 HUWE1Q7Z6Z7 4374 aaKnown RBP4.01□□□□□ -1.77
TCF4-216ENST00000562680 AKAP9Q99996 3911 aa4□□□□□ -1.77
TCF4-216ENST00000562680 MEGF8Q7Z7M0 2845 aa4□□□□□ -1.77
TCF4-216ENST00000562680 H0YAA0 97 aa3.96□□□□□ -1.77
TCF4-216ENST00000562680 C10orf95Q9H7T3 257 aa3.95□□□□□ -1.78
TCF4-216ENST00000562680 DNAH9Q9NYC9 4486 aa3.95□□□□□ -1.78
TCF4-216ENST00000562680 ALMS1Q8TCU4 4167 aa3.94□□□□□ -1.78
TCF4-216ENST00000562680 KRTAP15-1Q3LI76 137 aa3.94□□□□□ -1.78
TCF4-216ENST00000562680 ZNF469Q96JG9 3925 aaPredicted RBP3.93□□□□□ -1.78
TCF4-216ENST00000562680 KRTAP10-4P60372 401 aaPredicted RBP3.93□□□□□ -1.78
TCF4-216ENST00000562680 MT1HL1P0DM35 61 aa3.88□□□□□ -1.79
TCF4-216ENST00000562680 CUBNO60494 3623 aa3.88□□□□□ -1.79
TCF4-216ENST00000562680 PP632Q6XCG6 107 aa3.86□□□□□ -1.79
TCF4-216ENST00000562680 COL7A1Q02388 2944 aa3.86□□□□□ -1.79
TCF4-216ENST00000562680 VPS13CQ709C8 3753 aa3.82□□□□□ -1.8
TCF4-216ENST00000562680 PRO2289Q9P1D8 64 aa3.82□□□□□ -1.8
TCF4-216ENST00000562680 KRTAP23-1A1A580 65 aa3.81□□□□□ -1.8
TCF4-216ENST00000562680 PLECQ15149 4684 aaKnown RBP3.81□□□□□ -1.8
TCF4-216ENST00000562680 VPS13DQ5THJ4 4388 aa3.8□□□□□ -1.8
TCF4-216ENST00000562680 DNHD1Q96M86 4753 aa3.8□□□□□ -1.8
TCF4-216ENST00000562680 DNAH10Q8IVF4 4471 aa3.78□□□□□ -1.8
TCF4-216ENST00000562680 DNAH11Q96DT5 4516 aa3.77□□□□□ -1.81
TCF4-216ENST00000562680 ANK2Q01484 3957 aa3.76□□□□□ -1.81
TCF4-216ENST00000562680 INE1O15225 51 aa3.76□□□□□ -1.81
TCF4-216ENST00000562680 SRRM2Q9UQ35 2752 aaKnown RBP3.75□□□□□ -1.81
TCF4-216ENST00000562680 TNP1P09430 55 aa3.74□□□□□ -1.81
TCF4-216ENST00000562680 DNAH1Q9P2D7 4330 aa3.74□□□□□ -1.81
TCF4-216ENST00000562680 DNAH17Q9UFH2 4485 aa3.73□□□□□ -1.81
TCF4-216ENST00000562680 KRTAP4-5Q9BYR2 181 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms