RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 C1orf134Q5TEV5 83 aa6.86□□□□□ -1.31
CUX1-218ENST00000560541 Q6ZR54 194 aa6.86□□□□□ -1.31
CUX1-218ENST00000560541 IGLV7-46A0A075B6I9 117 aa6.85□□□□□ -1.31
CUX1-218ENST00000560541 KRTAP13-1Q8IUC0 172 aa6.85□□□□□ -1.31
CUX1-218ENST00000560541 ANAPC11Q9NYG5 84 aa6.85□□□□□ -1.31
CUX1-218ENST00000560541 STARD9Q9P2P6 4700 aa6.84□□□□□ -1.31
CUX1-218ENST00000560541 Q6ZRN7 208 aaPredicted RBP6.83□□□□□ -1.32
CUX1-218ENST00000560541 HECTD4Q9Y4D8 3996 aa6.82□□□□□ -1.32
CUX1-218ENST00000560541 HRES1P13985 223 aa6.82□□□□□ -1.32
CUX1-218ENST00000560541 Q96NJ1 140 aa6.82□□□□□ -1.32
CUX1-218ENST00000560541 KMT2AQ03164 3969 aa6.82□□□□□ -1.32
CUX1-218ENST00000560541 DNAH8Q96JB1 4490 aa6.81□□□□□ -1.32
CUX1-218ENST00000560541 IGHV6-1A0A0B4J1U7 121 aa6.81□□□□□ -1.32
CUX1-218ENST00000560541 H3BPC8 53 aa6.8□□□□□ -1.32
CUX1-218ENST00000560541 SPACA4Q8TDM5 124 aa6.8□□□□□ -1.32
CUX1-218ENST00000560541 TGP01266 2768 aa6.8□□□□□ -1.32
CUX1-218ENST00000560541 RTL8CO15255 209 aa6.8□□□□□ -1.32
CUX1-218ENST00000560541 DNAH2Q9P225 4427 aa6.78□□□□□ -1.32
CUX1-218ENST00000560541 C8orf17Q9NRJ1 99 aa6.77□□□□□ -1.32
CUX1-218ENST00000560541 PSORS1C2Q9UIG4 136 aa6.77□□□□□ -1.33
CUX1-218ENST00000560541 PRKDCP78527 4128 aaKnown RBP6.77□□□□□ -1.33
CUX1-218ENST00000560541 VPS13DQ5THJ4 4388 aa6.77□□□□□ -1.33
CUX1-218ENST00000560541 A0A087X002 238 aa6.76□□□□□ -1.33
CUX1-218ENST00000560541 NOTCH2NLQ7Z3S9 236 aa6.76□□□□□ -1.33
CUX1-218ENST00000560541 A0A087WTM6 91 aa6.75□□□□□ -1.33
CUX1-218ENST00000560541 WWC2-AS2Q96NR7 200 aa6.75□□□□□ -1.33
CUX1-218ENST00000560541 DNAH17Q9UFH2 4485 aa6.74□□□□□ -1.33
CUX1-218ENST00000560541 NUPR2A6NF83 97 aa6.74□□□□□ -1.33
CUX1-218ENST00000560541 SPINK6Q6UWN8 80 aa6.74□□□□□ -1.33
CUX1-218ENST00000560541 CDK2AP2O75956 126 aa6.74□□□□□ -1.33
CUX1-218ENST00000560541 A0A1B0GVX0 72 aa6.73□□□□□ -1.33
CUX1-218ENST00000560541 LINC00483Q53H64 154 aa6.73□□□□□ -1.33
CUX1-218ENST00000560541 MEGF8Q7Z7M0 2845 aa6.73□□□□□ -1.33
CUX1-218ENST00000560541 IGLV5-52A0A0A0MRZ9 124 aa6.72□□□□□ -1.33
CUX1-218ENST00000560541 ASB16-AS1Q495Z4 193 aa6.72□□□□□ -1.33
CUX1-218ENST00000560541 TP53AIP1Q9HCN2 124 aa6.71□□□□□ -1.33
CUX1-218ENST00000560541 FLG2Q5D862 2391 aaPredicted RBP6.71□□□□□ -1.34
CUX1-218ENST00000560541 FBN3Q75N90 2809 aa6.7□□□□□ -1.34
CUX1-218ENST00000560541 ZNF861PO60384 105 aa6.69□□□□□ -1.34
CUX1-218ENST00000560541 MRPL34Q9BQ48 92 aaKnown RBP6.69□□□□□ -1.34
CUX1-218ENST00000560541 DNAH6Q9C0G6 4158 aa6.68□□□□□ -1.34
CUX1-218ENST00000560541 A0A0A0MQY5 61 aa6.68□□□□□ -1.34
CUX1-218ENST00000560541 ROMO1P60602 79 aa6.68□□□□□ -1.34
CUX1-218ENST00000560541 MIR22HGQ0VDD5 57 aa6.67□□□□□ -1.34
CUX1-218ENST00000560541 CIRBP-AS1Q8TBR5 109 aa6.67□□□□□ -1.34
CUX1-218ENST00000560541 A0A1B0GU69 56 aa6.66□□□□□ -1.34
CUX1-218ENST00000560541 Q5W150 140 aa6.64□□□□□ -1.35
CUX1-218ENST00000560541 ALMS1Q8TCU4 4167 aa6.64□□□□□ -1.35
CUX1-218ENST00000560541 SPATA8Q6RVD6 105 aa6.64□□□□□ -1.35
CUX1-218ENST00000560541 DNAH11Q96DT5 4516 aa6.63□□□□□ -1.35
CUX1-218ENST00000560541 IGLV7-43P04211 117 aa6.61□□□□□ -1.35
CUX1-218ENST00000560541 CRIPTQ9P021 101 aa6.6□□□□□ -1.35
CUX1-218ENST00000560541 DNAH5Q8TE73 4624 aa6.58□□□□□ -1.36
CUX1-218ENST00000560541 UQCR11O14957 56 aa6.58□□□□□ -1.36
CUX1-218ENST00000560541 P0C880 135 aa6.57□□□□□ -1.36
CUX1-218ENST00000560541 LY6G6CO95867 125 aa6.56□□□□□ -1.36
CUX1-218ENST00000560541 KRTAP13-3Q3SY46 172 aa6.55□□□□□ -1.36
CUX1-218ENST00000560541 LRP1BQ9NZR2 4599 aa6.54□□□□□ -1.36
CUX1-218ENST00000560541 DNHD1Q96M86 4753 aa6.53□□□□□ -1.36
CUX1-218ENST00000560541 KRTAP10-2P60368 255 aa6.53□□□□□ -1.36
CUX1-218ENST00000560541 ACYP2P14621 99 aa6.53□□□□□ -1.36
CUX1-218ENST00000560541 KRTAP25-1Q3LHN0 102 aa6.52□□□□□ -1.37
CUX1-218ENST00000560541 SSBP3-AS1Q7Z2R9 100 aa6.49□□□□□ -1.37
CUX1-218ENST00000560541 KRTAP13-2Q52LG2 175 aa6.49□□□□□ -1.37
CUX1-218ENST00000560541 A8MUU9 505 aa6.47□□□□□ -1.37
CUX1-218ENST00000560541 VPS13BQ7Z7G8 4022 aa6.46□□□□□ -1.38
CUX1-218ENST00000560541 FAM229AH3BQW9 127 aa6.44□□□□□ -1.38
CUX1-218ENST00000560541 HYDINQ4G0P3 5121 aa6.44□□□□□ -1.38
CUX1-218ENST00000560541 DMAC1Q96GE9 116 aa6.43□□□□□ -1.38
CUX1-218ENST00000560541 KRTAP10-1P60331 282 aa6.43□□□□□ -1.38
CUX1-218ENST00000560541 IGKV2D-30A0A075B6S6 120 aa6.43□□□□□ -1.38
CUX1-218ENST00000560541 IGKV2-30P06310 120 aa6.43□□□□□ -1.38
CUX1-218ENST00000560541 PKD1P98161 4303 aa6.42□□□□□ -1.38
CUX1-218ENST00000560541 NDUFAF8A1L188 74 aa6.42□□□□□ -1.38
CUX1-218ENST00000560541 FAT2Q9NYQ8 4349 aa6.42□□□□□ -1.38
CUX1-218ENST00000560541 KRTAP16-1A8MUX0 517 aa6.39□□□□□ -1.39
CUX1-218ENST00000560541 SPINK1P00995 79 aa6.38□□□□□ -1.39
CUX1-218ENST00000560541 KRTAP1-4P0C5Y4 121 aa6.37□□□□□ -1.39
CUX1-218ENST00000560541 SPINT4Q6UDR6 99 aa6.37□□□□□ -1.39
CUX1-218ENST00000560541 LINC00304Q8N9R0 145 aa6.37□□□□□ -1.39
CUX1-218ENST00000560541 PKHD1P08F94 4074 aa6.35□□□□□ -1.39
CUX1-218ENST00000560541 Q6ZSA8 131 aa6.34□□□□□ -1.39
CUX1-218ENST00000560541 TYMSOSQ8TAI1 123 aa6.32□□□□□ -1.4
CUX1-218ENST00000560541 DMBT1Q9UGM3 2413 aaPredicted RBP6.3□□□□□ -1.4
CUX1-218ENST00000560541 Q8N1X5 172 aa6.29□□□□□ -1.4
CUX1-218ENST00000560541 C20orf166-AS1Q96NR2 134 aa6.28□□□□□ -1.4
CUX1-218ENST00000560541 H0YAA0 97 aa6.25□□□□□ -1.41
CUX1-218ENST00000560541 FAT1Q14517 4588 aa6.23□□□□□ -1.41
CUX1-218ENST00000560541 SMR3BP02814 79 aaPredicted RBP6.22□□□□□ -1.41
CUX1-218ENST00000560541 C9orf92A6NGG3 77 aa6.21□□□□□ -1.41
CUX1-218ENST00000560541 SACSQ9NZJ4 4579 aa6.17□□□□□ -1.42
CUX1-218ENST00000560541 DYNC1H1Q14204 4646 aaKnown RBP6.17□□□□□ -1.42
CUX1-218ENST00000560541 C10orf95Q9H7T3 257 aa6.12□□□□□ -1.43
CUX1-218ENST00000560541 A0A1B0GU33 70 aa6.11□□□□□ -1.43
CUX1-218ENST00000560541 LUZP6Q538Z0 58 aa6.11□□□□□ -1.43
CUX1-218ENST00000560541 TPRXLQ17RH7 258 aa6.09□□□□□ -1.43
CUX1-218ENST00000560541 K7ERS5 55 aa6.08□□□□□ -1.44
CUX1-218ENST00000560541 KRTAP15-1Q3LI76 137 aa6.08□□□□□ -1.44
CUX1-218ENST00000560541 KRTAP3-1Q9BYR8 98 aa6.08□□□□□ -1.44
CUX1-218ENST00000560541 APOBP04114 4563 aaKnown RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms