RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 HRES1P13985 223 aa7.37□□□□□ -1.23
LDLR-205ENST00000557933 PSORS1C2Q9UIG4 136 aa7.37□□□□□ -1.23
LDLR-205ENST00000557933 Q5W150 140 aa7.37□□□□□ -1.23
LDLR-205ENST00000557933 NBDYA0A0U1RRE5 68 aa7.36□□□□□ -1.23
LDLR-205ENST00000557933 KRTAP13-1Q8IUC0 172 aa7.36□□□□□ -1.23
LDLR-205ENST00000557933 CIRBP-AS1Q8TBR5 109 aa7.36□□□□□ -1.23
LDLR-205ENST00000557933 A0A1B0GVX0 72 aa7.34□□□□□ -1.23
LDLR-205ENST00000557933 C14orf177Q52M58 125 aa7.34□□□□□ -1.23
LDLR-205ENST00000557933 VPS13DQ5THJ4 4388 aa7.34□□□□□ -1.23
LDLR-205ENST00000557933 H3BPC8 53 aa7.34□□□□□ -1.24
LDLR-205ENST00000557933 WWC2-AS2Q96NR7 200 aa7.33□□□□□ -1.24
LDLR-205ENST00000557933 LOC101927531A0A1B0GV80 90 aa7.32□□□□□ -1.24
LDLR-205ENST00000557933 MRPL34Q9BQ48 92 aaKnown RBP7.32□□□□□ -1.24
LDLR-205ENST00000557933 ALMS1Q8TCU4 4167 aa7.31□□□□□ -1.24
LDLR-205ENST00000557933 Q6ZRN7 208 aaPredicted RBP7.31□□□□□ -1.24
LDLR-205ENST00000557933 Q75L30 129 aa7.31□□□□□ -1.24
LDLR-205ENST00000557933 SPACA4Q8TDM5 124 aa7.31□□□□□ -1.24
LDLR-205ENST00000557933 DNAH11Q96DT5 4516 aa7.3□□□□□ -1.24
LDLR-205ENST00000557933 RTL8CO15255 209 aa7.28□□□□□ -1.24
LDLR-205ENST00000557933 Q6ZR54 194 aa7.28□□□□□ -1.24
LDLR-205ENST00000557933 A0A087WTM6 91 aa7.26□□□□□ -1.25
LDLR-205ENST00000557933 TP53AIP1Q9HCN2 124 aa7.26□□□□□ -1.25
LDLR-205ENST00000557933 RBM12B-AS1Q9P1G2 102 aa7.26□□□□□ -1.25
LDLR-205ENST00000557933 KTN1-AS1Q86SY8 53 aa7.25□□□□□ -1.25
LDLR-205ENST00000557933 ASB16-AS1Q495Z4 193 aa7.25□□□□□ -1.25
LDLR-205ENST00000557933 IGLV5-52A0A0A0MRZ9 124 aa7.24□□□□□ -1.25
LDLR-205ENST00000557933 PRAC1Q96KF2 57 aa7.24□□□□□ -1.25
LDLR-205ENST00000557933 ATP11AUNQ6ZP68 121 aa7.24□□□□□ -1.25
LDLR-205ENST00000557933 CDC42SE1Q9NRR8 79 aa7.24□□□□□ -1.25
LDLR-205ENST00000557933 A6NN06 94 aa7.23□□□□□ -1.25
LDLR-205ENST00000557933 LINC01558Q9Y6Z2 57 aa7.23□□□□□ -1.25
LDLR-205ENST00000557933 ADM2Q7Z4H4 148 aa7.22□□□□□ -1.25
LDLR-205ENST00000557933 ZNF861PO60384 105 aa7.22□□□□□ -1.25
LDLR-205ENST00000557933 LRP1BQ9NZR2 4599 aa7.21□□□□□ -1.26
LDLR-205ENST00000557933 LINC00483Q53H64 154 aa7.2□□□□□ -1.26
LDLR-205ENST00000557933 ZNF706Q9Y5V0 76 aaPredicted RBP7.16□□□□□ -1.26
LDLR-205ENST00000557933 IGKV2D-30A0A075B6S6 120 aa7.16□□□□□ -1.26
LDLR-205ENST00000557933 IGKV2-30P06310 120 aa7.16□□□□□ -1.26
LDLR-205ENST00000557933 PLAC8Q9NZF1 115 aa7.16□□□□□ -1.26
LDLR-205ENST00000557933 DNAH5Q8TE73 4624 aa7.15□□□□□ -1.27
LDLR-205ENST00000557933 SPINK1P00995 79 aa7.14□□□□□ -1.27
LDLR-205ENST00000557933 FAT2Q9NYQ8 4349 aa7.13□□□□□ -1.27
LDLR-205ENST00000557933 IGLV7-43P04211 117 aa7.13□□□□□ -1.27
LDLR-205ENST00000557933 LY6G6CO95867 125 aa7.12□□□□□ -1.27
LDLR-205ENST00000557933 KRTAP13-3Q3SY46 172 aa7.11□□□□□ -1.27
LDLR-205ENST00000557933 HYDINQ4G0P3 5121 aa7.11□□□□□ -1.27
LDLR-205ENST00000557933 FLG2Q5D862 2391 aaPredicted RBP7.11□□□□□ -1.27
LDLR-205ENST00000557933 LINC00313P59037 77 aa7.1□□□□□ -1.27
LDLR-205ENST00000557933 KRTAP10-2P60368 255 aa7.1□□□□□ -1.27
LDLR-205ENST00000557933 C7orf65Q6ZTY9 151 aa7.1□□□□□ -1.27
LDLR-205ENST00000557933 VPS13BQ7Z7G8 4022 aa7.1□□□□□ -1.27
LDLR-205ENST00000557933 ACYP2P14621 99 aa7.1□□□□□ -1.27
LDLR-205ENST00000557933 A0A1B0GU69 56 aa7.08□□□□□ -1.28
LDLR-205ENST00000557933 C1orf134Q5TEV5 83 aa7.08□□□□□ -1.28
LDLR-205ENST00000557933 KRTAP13-2Q52LG2 175 aa7.05□□□□□ -1.28
LDLR-205ENST00000557933 Q8N1X5 172 aa7.04□□□□□ -1.28
LDLR-205ENST00000557933 PKHD1P08F94 4074 aa7.03□□□□□ -1.28
LDLR-205ENST00000557933 DMAC1Q96GE9 116 aa7.02□□□□□ -1.29
LDLR-205ENST00000557933 DMBT1Q9UGM3 2413 aaPredicted RBP7.02□□□□□ -1.29
LDLR-205ENST00000557933 SACSQ9NZJ4 4579 aa7□□□□□ -1.29
LDLR-205ENST00000557933 FAM229AH3BQW9 127 aa6.99□□□□□ -1.29
LDLR-205ENST00000557933 MIR22HGQ0VDD5 57 aa6.96□□□□□ -1.3
LDLR-205ENST00000557933 KRTAP10-1P60331 282 aa6.95□□□□□ -1.3
LDLR-205ENST00000557933 PKD1P98161 4303 aa6.94□□□□□ -1.3
LDLR-205ENST00000557933 C8orf87E5RJ46 101 aa6.94□□□□□ -1.3
LDLR-205ENST00000557933 SSBP3-AS1Q7Z2R9 100 aa6.94□□□□□ -1.3
LDLR-205ENST00000557933 FAT1Q14517 4588 aa6.93□□□□□ -1.3
LDLR-205ENST00000557933 KRTAP16-1A8MUX0 517 aa6.93□□□□□ -1.3
LDLR-205ENST00000557933 UQCR11O14957 56 aa6.9□□□□□ -1.3
LDLR-205ENST00000557933 PLA2G1BP04054 148 aaKnown RBP6.9□□□□□ -1.3
LDLR-205ENST00000557933 Q6ZSA8 131 aa6.9□□□□□ -1.3
LDLR-205ENST00000557933 C9orf92A6NGG3 77 aa6.9□□□□□ -1.3
LDLR-205ENST00000557933 CSAG1Q6PB30 78 aa6.88□□□□□ -1.31
LDLR-205ENST00000557933 SMR3BP02814 79 aaPredicted RBP6.87□□□□□ -1.31
LDLR-205ENST00000557933 KRTAP1-4P0C5Y4 121 aa6.87□□□□□ -1.31
LDLR-205ENST00000557933 SPATA8Q6RVD6 105 aa6.87□□□□□ -1.31
LDLR-205ENST00000557933 RYR2Q92736 4967 aa6.87□□□□□ -1.31
LDLR-205ENST00000557933 A0A1B0GVY2 172 aa6.87□□□□□ -1.31
LDLR-205ENST00000557933 C4orf48Q5BLP8 95 aa6.87□□□□□ -1.31
LDLR-205ENST00000557933 TYMSOSQ8TAI1 123 aa6.85□□□□□ -1.31
LDLR-205ENST00000557933 CRIPTQ9P021 101 aa6.84□□□□□ -1.31
LDLR-205ENST00000557933 LINC01554Q52M75 96 aa6.8□□□□□ -1.32
LDLR-205ENST00000557933 MYCBP2O75592 4640 aa6.8□□□□□ -1.32
LDLR-205ENST00000557933 DYNC1H1Q14204 4646 aaKnown RBP6.76□□□□□ -1.33
LDLR-205ENST00000557933 H0YAA0 97 aa6.74□□□□□ -1.33
LDLR-205ENST00000557933 KMT2CQ8NEZ4 4911 aaKnown RBP6.74□□□□□ -1.33
LDLR-205ENST00000557933 LINC00304Q8N9R0 145 aa6.71□□□□□ -1.34
LDLR-205ENST00000557933 LRP1Q07954 4544 aaKnown RBP6.69□□□□□ -1.34
LDLR-205ENST00000557933 KRTAP3-1Q9BYR8 98 aa6.69□□□□□ -1.34
LDLR-205ENST00000557933 APOBP04114 4563 aaKnown RBP6.67□□□□□ -1.34
LDLR-205ENST00000557933 PKHD1L1Q86WI1 4243 aa6.66□□□□□ -1.34
LDLR-205ENST00000557933 A0A1B0GU33 70 aa6.63□□□□□ -1.35
LDLR-205ENST00000557933 RYR3Q15413 4870 aa6.63□□□□□ -1.35
LDLR-205ENST00000557933 H3BS24 57 aa6.61□□□□□ -1.35
LDLR-205ENST00000557933 HSPG2P98160 4391 aa6.6□□□□□ -1.35
LDLR-205ENST00000557933 A8MUU9 505 aa6.59□□□□□ -1.35
LDLR-205ENST00000557933 A0A0D9SG42 100 aa6.59□□□□□ -1.36
LDLR-205ENST00000557933 KRTAP10-4P60372 401 aaPredicted RBP6.59□□□□□ -1.36
LDLR-205ENST00000557933 H1FX-AS1Q4G0G2 97 aa6.55□□□□□ -1.36
LDLR-205ENST00000557933 FAT3Q8TDW7 4589 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms