RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 SOSTDC1Q6X4U4 206 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 C7orf65Q6ZTY9 151 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 OR13C6PQ8NH95 151 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 CNFNQ9BYD5 112 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 LAMTOR3Q9UHA4 124 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 CYSLTR1Q9Y271 337 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 TRAV9-1A0A075B6T8 112 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 SPRR1AP35321 89 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 AKR1D1P51857 326 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 MRPS36P82909 103 aaKnown RBP0.49□□□□□ -2.33
PRPF39-208ENST00000554785 PMAIP1Q13794 54 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 ADIRFQ15847 76 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 LINC00299Q6ZSB3 139 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 MBD3L1Q8WWY6 194 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 PRELID3AQ96N28 172 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 SIGMAR1Q99720 223 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 PRO1933Q9H354 126 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 KCNQ1DNQ9H478 68 aa0.49□□□□□ -2.33
PRPF39-208ENST00000554785 NXT2Q9NPJ8 142 aaKnown RBP0.49□□□□□ -2.33
PRPF39-208ENST00000554785 TRBV10-2A0A0K0K1G8 114 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 TCL1BO95988 128 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 NDUFA5Q16718 116 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 SCGB3A1Q96QR1 104 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 AMELXQ99217 191 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 TCEAL7Q9BRU2 100 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 MANBALQ9NQG1 85 aa0.48□□□□□ -2.33
PRPF39-208ENST00000554785 IGIPA6NJ69 53 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 H3BRM9 83 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 H3BUT2 72 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 K7EMI3 77 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 PDE6DO43924 150 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 FXYD2P54710 66 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 SEC11AP67812 179 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 Q1T7F1 81 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 LYRM7Q5U5X0 104 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 SMIM7Q9BQ49 75 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 C20orf78Q9BR46 151 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 CYSTM1Q9H1C7 97 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 NAT8BQ9UHF3 227 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 V9GYV3 84 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 A0A087WSZ3 146 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 KANTRA0A1W2PQU2 76 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 F8WEM9 126 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 SPINK7P58062 85 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 IFITM2Q01629 132 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 ZNF345Q14585 488 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 ALKAL2Q6UX46 152 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 BAGE3Q86Y29 109 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 BIN3Q9NQY0 253 aa0.47□□□□□ -2.33
PRPF39-208ENST00000554785 SYNE1Q8NF91 8797 aaKnown RBP0.47□□□□□ -2.33
PRPF39-208ENST00000554785 IGKV3D-7A0A0C4DH55 119 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 TRBV7-7A0A0K0K1E9 115 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 TEX49A0A1B0GTD5 131 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BOP23527 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BBP33778 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BDP58876 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BCP62807 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 COX17Q14061 63 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST2H2BEQ16778 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.46□□□□□ -2.34
PRPF39-208ENST00000554785 LCA10Q71F78 164 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BHQ93079 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BNQ99877 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 HIST1H2BMQ99879 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 PMCHL2Q9BQD1 86 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 UMAD1C9J7I0 102 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 COX7BP24311 80 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 Q6ZQY7 126 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 Q8N8P6 123 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 CLEC2BQ92478 149 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 TOMM6Q96B49 74 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 SMCO4Q9NRQ5 59 aa0.46□□□□□ -2.34
PRPF39-208ENST00000554785 NHP2Q9NX24 153 aaKnown RBP0.46□□□□□ -2.34
PRPF39-208ENST00000554785 SMIM27A0A1W2PRY6 76 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 H0YAA0 97 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 HBDP02042 147 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 IGLC3P0DOY3 106 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 G0S2P27469 103 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 ELOF1P60002 83 aaKnown RBP0.45□□□□□ -2.34
PRPF39-208ENST00000554785 MT1XP80297 61 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 LINC01554Q52M75 96 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 ANKRD29Q8N6D5 301 aa0.45□□□□□ -2.34
PRPF39-208ENST00000554785 SPRR1BP22528 89 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 KLKP1Q107X0 134 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 RHEBQ15382 184 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 KRTAP19-8Q3LI54 63 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 Q5XG85 94 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 VPS25Q9BRG1 176 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 SPRR2GQ9BYE4 73 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 OSTCQ9NRP0 149 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 MYMXA0A1B0GTQ4 84 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 S100A8P05109 93 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 C3orf79P0CE67 100 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 H1FX-AS1Q4G0G2 97 aa0.44□□□□□ -2.34
PRPF39-208ENST00000554785 RGS21Q2M5E4 152 aa0.43□□□□□ -2.34
PRPF39-208ENST00000554785 SFTA2Q6UW10 78 aa0.43□□□□□ -2.34
PRPF39-208ENST00000554785 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.43□□□□□ -2.34
PRPF39-208ENST00000554785 TCTE3Q8IZS6 198 aa0.43□□□□□ -2.34
PRPF39-208ENST00000554785 C12orf57Q99622 126 aa0.43□□□□□ -2.34
PRPF39-208ENST00000554785 SNHG12Q9BXW3 62 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms