RNA–Protein interactions for RNA: ENST00000554514.1

ARHGEF40-203, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 2,928 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-203ENST00000554514 A0A087X002 238 aa9.35□□□□□ -0.91
ARHGEF40-203ENST00000554514 NOTCH2NLQ7Z3S9 236 aa9.35□□□□□ -0.91
ARHGEF40-203ENST00000554514 CIRBP-AS1Q8TBR5 109 aa9.35□□□□□ -0.91
ARHGEF40-203ENST00000554514 DNAH6Q9C0G6 4158 aa9.34□□□□□ -0.91
ARHGEF40-203ENST00000554514 A0A1B0GVX0 72 aa9.33□□□□□ -0.92
ARHGEF40-203ENST00000554514 A8MU10 97 aa9.33□□□□□ -0.92
ARHGEF40-203ENST00000554514 H3BPC8 53 aa9.33□□□□□ -0.92
ARHGEF40-203ENST00000554514 KTN1-AS1Q86SY8 53 aa9.32□□□□□ -0.92
ARHGEF40-203ENST00000554514 IGLV7-43P04211 117 aa9.31□□□□□ -0.92
ARHGEF40-203ENST00000554514 Q1T7F1 81 aa9.29□□□□□ -0.92
ARHGEF40-203ENST00000554514 SPANXA2-OT1Q8N9U9 137 aa9.28□□□□□ -0.92
ARHGEF40-203ENST00000554514 KRTAP10-2P60368 255 aa9.28□□□□□ -0.92
ARHGEF40-203ENST00000554514 SPTSSBQ8NFR3 76 aa9.27□□□□□ -0.93
ARHGEF40-203ENST00000554514 ASB16-AS1Q495Z4 193 aa9.26□□□□□ -0.93
ARHGEF40-203ENST00000554514 MRPL34Q9BQ48 92 aaKnown RBP9.26□□□□□ -0.93
ARHGEF40-203ENST00000554514 TP53AIP1Q9HCN2 124 aa9.26□□□□□ -0.93
ARHGEF40-203ENST00000554514 DNAH11Q96DT5 4516 aa9.26□□□□□ -0.93
ARHGEF40-203ENST00000554514 ALMS1Q8TCU4 4167 aa9.25□□□□□ -0.93
ARHGEF40-203ENST00000554514 A8MUN3 132 aa9.25□□□□□ -0.93
ARHGEF40-203ENST00000554514 DNAH5Q8TE73 4624 aa9.24□□□□□ -0.93
ARHGEF40-203ENST00000554514 C8orf87E5RJ46 101 aa9.23□□□□□ -0.93
ARHGEF40-203ENST00000554514 COA5Q86WW8 74 aa9.22□□□□□ -0.93
ARHGEF40-203ENST00000554514 IGLV7-46A0A075B6I9 117 aa9.2□□□□□ -0.94
ARHGEF40-203ENST00000554514 Q8N9P0 234 aaPredicted RBP9.16□□□□□ -0.94
ARHGEF40-203ENST00000554514 Q5W150 140 aa9.16□□□□□ -0.94
ARHGEF40-203ENST00000554514 RETNLBQ9BQ08 111 aa9.16□□□□□ -0.94
ARHGEF40-203ENST00000554514 PRR15LQ9BU68 103 aa9.16□□□□□ -0.94
ARHGEF40-203ENST00000554514 KRTAP10-1P60331 282 aa9.14□□□□□ -0.95
ARHGEF40-203ENST00000554514 HYDINQ4G0P3 5121 aa9.14□□□□□ -0.95
ARHGEF40-203ENST00000554514 LRP1BQ9NZR2 4599 aa9.13□□□□□ -0.95
ARHGEF40-203ENST00000554514 Q5VV11 94 aa9.13□□□□□ -0.95
ARHGEF40-203ENST00000554514 SSBP3-AS1Q7Z2R9 100 aa9.11□□□□□ -0.95
ARHGEF40-203ENST00000554514 CHKB-CPT1BH3BT56 60 aa9.11□□□□□ -0.95
ARHGEF40-203ENST00000554514 KRTAP13-2Q52LG2 175 aa9.1□□□□□ -0.95
ARHGEF40-203ENST00000554514 SPAG11AQ6PDA7 123 aa9.1□□□□□ -0.95
ARHGEF40-203ENST00000554514 PRR26Q8N8Z3 221 aa9.09□□□□□ -0.95
ARHGEF40-203ENST00000554514 LIMD2Q9BT23 127 aa9.08□□□□□ -0.96
ARHGEF40-203ENST00000554514 HRES1P13985 223 aa9.07□□□□□ -0.96
ARHGEF40-203ENST00000554514 PKD1P98161 4303 aa9.06□□□□□ -0.96
ARHGEF40-203ENST00000554514 LINC00313P59037 77 aa9.06□□□□□ -0.96
ARHGEF40-203ENST00000554514 LOC101927531A0A1B0GV80 90 aa9.05□□□□□ -0.96
ARHGEF40-203ENST00000554514 FAT2Q9NYQ8 4349 aa9.03□□□□□ -0.96
ARHGEF40-203ENST00000554514 VPS13BQ7Z7G8 4022 aa9.02□□□□□ -0.97
ARHGEF40-203ENST00000554514 KRTAP13-3Q3SY46 172 aa9.01□□□□□ -0.97
ARHGEF40-203ENST00000554514 C7orf65Q6ZTY9 151 aa9.01□□□□□ -0.97
ARHGEF40-203ENST00000554514 Q6ZSA8 131 aa9.01□□□□□ -0.97
ARHGEF40-203ENST00000554514 ATP11AUNQ6ZP68 121 aa9□□□□□ -0.97
ARHGEF40-203ENST00000554514 LCA10Q71F78 164 aa9□□□□□ -0.97
ARHGEF40-203ENST00000554514 A6NED7 52 aa9□□□□□ -0.97
ARHGEF40-203ENST00000554514 A6NN06 94 aa9□□□□□ -0.97
ARHGEF40-203ENST00000554514 KRTAP1-4P0C5Y4 121 aa8.97□□□□□ -0.97
ARHGEF40-203ENST00000554514 PLA2G1BP04054 148 aaKnown RBP8.96□□□□□ -0.98
ARHGEF40-203ENST00000554514 Q75L30 129 aa8.94□□□□□ -0.98
ARHGEF40-203ENST00000554514 FAM229AH3BQW9 127 aa8.93□□□□□ -0.98
ARHGEF40-203ENST00000554514 TYMSOSQ8TAI1 123 aa8.92□□□□□ -0.98
ARHGEF40-203ENST00000554514 LINC01558Q9Y6Z2 57 aa8.92□□□□□ -0.98
ARHGEF40-203ENST00000554514 PKHD1P08F94 4074 aa8.91□□□□□ -0.98
ARHGEF40-203ENST00000554514 IGKV2D-30A0A075B6S6 120 aa8.9□□□□□ -0.98
ARHGEF40-203ENST00000554514 IGKV2-30P06310 120 aa8.9□□□□□ -0.98
ARHGEF40-203ENST00000554514 ACYP2P14621 99 aa8.89□□□□□ -0.99
ARHGEF40-203ENST00000554514 PRAC1Q96KF2 57 aa8.88□□□□□ -0.99
ARHGEF40-203ENST00000554514 KRTAP16-1A8MUX0 517 aa8.87□□□□□ -0.99
ARHGEF40-203ENST00000554514 SMR3BP02814 79 aaPredicted RBP8.87□□□□□ -0.99
ARHGEF40-203ENST00000554514 SPINK7P58062 85 aa8.86□□□□□ -0.99
ARHGEF40-203ENST00000554514 DMAC1Q96GE9 116 aa8.83□□□□□ -1
ARHGEF40-203ENST00000554514 LINC01554Q52M75 96 aa8.83□□□□□ -1
ARHGEF40-203ENST00000554514 CDC42SE1Q9NRR8 79 aa8.79□□□□□ -1
ARHGEF40-203ENST00000554514 SPINK1P00995 79 aa8.79□□□□□ -1
ARHGEF40-203ENST00000554514 SACSQ9NZJ4 4579 aa8.78□□□□□ -1
ARHGEF40-203ENST00000554514 LINC00304Q8N9R0 145 aa8.77□□□□□ -1.01
ARHGEF40-203ENST00000554514 ADM2Q7Z4H4 148 aa8.75□□□□□ -1.01
ARHGEF40-203ENST00000554514 DYNC1H1Q14204 4646 aaKnown RBP8.73□□□□□ -1.01
ARHGEF40-203ENST00000554514 FAT1Q14517 4588 aa8.73□□□□□ -1.01
ARHGEF40-203ENST00000554514 C9orf92A6NGG3 77 aa8.71□□□□□ -1.01
ARHGEF40-203ENST00000554514 A0A1B0GU69 56 aa8.7□□□□□ -1.02
ARHGEF40-203ENST00000554514 Q8N1X5 172 aa8.7□□□□□ -1.02
ARHGEF40-203ENST00000554514 APOBP04114 4563 aaKnown RBP8.59□□□□□ -1.03
ARHGEF40-203ENST00000554514 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
ARHGEF40-203ENST00000554514 A0A1B0GVY2 172 aa8.55□□□□□ -1.04
ARHGEF40-203ENST00000554514 KRTAP10-4P60372 401 aaPredicted RBP8.52□□□□□ -1.05
ARHGEF40-203ENST00000554514 KRTAP21-3Q3LHN1 58 aa8.5□□□□□ -1.05
ARHGEF40-203ENST00000554514 MIR22HGQ0VDD5 57 aa8.5□□□□□ -1.05
ARHGEF40-203ENST00000554514 PKHD1L1Q86WI1 4243 aa8.5□□□□□ -1.05
ARHGEF40-203ENST00000554514 UQCR11O14957 56 aa8.5□□□□□ -1.05
ARHGEF40-203ENST00000554514 KMT2CQ8NEZ4 4911 aaKnown RBP8.47□□□□□ -1.05
ARHGEF40-203ENST00000554514 A8MUU9 505 aa8.47□□□□□ -1.05
ARHGEF40-203ENST00000554514 C20orf166-AS1Q96NR2 134 aa8.47□□□□□ -1.05
ARHGEF40-203ENST00000554514 RYR2Q92736 4967 aa8.46□□□□□ -1.06
ARHGEF40-203ENST00000554514 SPATA8Q6RVD6 105 aa8.46□□□□□ -1.06
ARHGEF40-203ENST00000554514 CSAG1Q6PB30 78 aa8.44□□□□□ -1.06
ARHGEF40-203ENST00000554514 LRP1Q07954 4544 aaKnown RBP8.41□□□□□ -1.06
ARHGEF40-203ENST00000554514 FLG2Q5D862 2391 aaPredicted RBP8.41□□□□□ -1.06
ARHGEF40-203ENST00000554514 A0A0A0MQY5 61 aa8.4□□□□□ -1.06
ARHGEF40-203ENST00000554514 KRTAP3-1Q9BYR8 98 aa8.4□□□□□ -1.06
ARHGEF40-203ENST00000554514 DMBT1Q9UGM3 2413 aaPredicted RBP8.33□□□□□ -1.08
ARHGEF40-203ENST00000554514 FAT3Q8TDW7 4589 aa8.3□□□□□ -1.08
ARHGEF40-203ENST00000554514 TNXBP22105 4242 aa8.28□□□□□ -1.08
ARHGEF40-203ENST00000554514 Q5VSD8 79 aa8.28□□□□□ -1.08
ARHGEF40-203ENST00000554514 MYCBP2O75592 4640 aa8.27□□□□□ -1.09
ARHGEF40-203ENST00000554514 H0YAA0 97 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms