RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 DNAL4O96015 105 aa5.67□□□□□ -1.5
CCDC88C-206ENST00000553437 Q5XG85 94 aa5.67□□□□□ -1.5
CCDC88C-206ENST00000553437 CRCT1Q9UGL9 99 aa5.67□□□□□ -1.5
CCDC88C-206ENST00000553437 A0A0U1RQV1 116 aa5.66□□□□□ -1.5
CCDC88C-206ENST00000553437 A0A1B0GX51 115 aa5.66□□□□□ -1.5
CCDC88C-206ENST00000553437 Q6Q795 121 aa5.66□□□□□ -1.5
CCDC88C-206ENST00000553437 Q6ZQY7 126 aa5.66□□□□□ -1.5
CCDC88C-206ENST00000553437 KRTAP4-1Q9BYQ7 146 aa5.65□□□□□ -1.5
CCDC88C-206ENST00000553437 IGLV8-61A0A075B6I0 122 aa5.63□□□□□ -1.51
CCDC88C-206ENST00000553437 GHRHP01286 108 aa5.63□□□□□ -1.51
CCDC88C-206ENST00000553437 SEC61BP60468 96 aaKnown RBP5.63□□□□□ -1.51
CCDC88C-206ENST00000553437 C1orf195Q5TG92 126 aa5.63□□□□□ -1.51
CCDC88C-206ENST00000553437 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.63□□□□□ -1.51
CCDC88C-206ENST00000553437 ORMDL1Q9P0S3 153 aa5.62□□□□□ -1.51
CCDC88C-206ENST00000553437 F8WEM9 126 aa5.61□□□□□ -1.51
CCDC88C-206ENST00000553437 OBSCN-AS1Q96MR7 158 aa5.61□□□□□ -1.51
CCDC88C-206ENST00000553437 Q6JHZ5 121 aa5.6□□□□□ -1.51
CCDC88C-206ENST00000553437 IGFL1Q6UW32 110 aa5.6□□□□□ -1.51
CCDC88C-206ENST00000553437 TRBV7-7A0A0K0K1E9 115 aa5.59□□□□□ -1.51
CCDC88C-206ENST00000553437 C9orf92A6NGG3 77 aa5.59□□□□□ -1.51
CCDC88C-206ENST00000553437 LINC00643Q86TS7 51 aa5.59□□□□□ -1.51
CCDC88C-206ENST00000553437 IMUPQ9GZP8 106 aa5.59□□□□□ -1.51
CCDC88C-206ENST00000553437 H3BQ85 93 aa5.58□□□□□ -1.52
CCDC88C-206ENST00000553437 ANAPC13Q9BS18 74 aa5.58□□□□□ -1.52
CCDC88C-206ENST00000553437 JMJD7-PLA2G4BH0Y9G9 81 aa5.57□□□□□ -1.52
CCDC88C-206ENST00000553437 TMEM256-PLSCR3K7ERE1 68 aa5.57□□□□□ -1.52
CCDC88C-206ENST00000553437 NDUFV3P56181 108 aaKnown RBP5.56□□□□□ -1.52
CCDC88C-206ENST00000553437 PCOTHQ58A44 107 aa5.55□□□□□ -1.52
CCDC88C-206ENST00000553437 C14orf132Q9NPU4 83 aa5.55□□□□□ -1.52
CCDC88C-206ENST00000553437 CCKP06307 115 aa5.53□□□□□ -1.52
CCDC88C-206ENST00000553437 RPL37P61927 97 aaKnown RBP5.5□□□□□ -1.53
CCDC88C-206ENST00000553437 KRTAP19-2Q3LHN2 52 aa5.5□□□□□ -1.53
CCDC88C-206ENST00000553437 ATP5EP2Q5VTU8 51 aa5.5□□□□□ -1.53
CCDC88C-206ENST00000553437 LOC110117498A0A087WWA1 95 aa5.49□□□□□ -1.53
CCDC88C-206ENST00000553437 PDE6GP18545 87 aa5.49□□□□□ -1.53
CCDC88C-206ENST00000553437 LINC00846Q9NV44 126 aa5.49□□□□□ -1.53
CCDC88C-206ENST00000553437 FAM236AA0A1B0GUQ0 79 aa5.48□□□□□ -1.53
CCDC88C-206ENST00000553437 FAM236BA0A1B0GV22 79 aa5.48□□□□□ -1.53
CCDC88C-206ENST00000553437 RBM3P98179 157 aaKnown RBP5.48□□□□□ -1.53
CCDC88C-206ENST00000553437 Q6ZQT0 140 aa5.47□□□□□ -1.53
CCDC88C-206ENST00000553437 A0A1W2PNM2 257 aa5.46□□□□□ -1.54
CCDC88C-206ENST00000553437 A0A087WSZ3 146 aa5.45□□□□□ -1.54
CCDC88C-206ENST00000553437 ATOX1O00244 68 aa5.45□□□□□ -1.54
CCDC88C-206ENST00000553437 HIST1H4AP62805 103 aaKnown RBP5.45□□□□□ -1.54
CCDC88C-206ENST00000553437 DSCR8Q96T75 97 aa5.45□□□□□ -1.54
CCDC88C-206ENST00000553437 UBL5Q9BZL1 73 aa5.45□□□□□ -1.54
CCDC88C-206ENST00000553437 SS18L2Q9UHA2 77 aa5.45□□□□□ -1.54
CCDC88C-206ENST00000553437 IGKV3D-7A0A0C4DH55 119 aa5.44□□□□□ -1.54
CCDC88C-206ENST00000553437 CCDC179H3BU77 68 aa5.44□□□□□ -1.54
CCDC88C-206ENST00000553437 Q96NJ1 140 aa5.44□□□□□ -1.54
CCDC88C-206ENST00000553437 Q75L30 129 aa5.42□□□□□ -1.54
CCDC88C-206ENST00000553437 TRBV7-4A0A0J9YYF1 115 aa5.41□□□□□ -1.54
CCDC88C-206ENST00000553437 UQCRQO14949 82 aa5.41□□□□□ -1.54
CCDC88C-206ENST00000553437 MT1HP80294 61 aa5.41□□□□□ -1.54
CCDC88C-206ENST00000553437 COX7CP15954 63 aa5.39□□□□□ -1.55
CCDC88C-206ENST00000553437 Q6ZVQ6 151 aa5.38□□□□□ -1.55
CCDC88C-206ENST00000553437 C20orf166-AS1Q96NR2 134 aa5.38□□□□□ -1.55
CCDC88C-206ENST00000553437 A8MUU9 505 aa5.37□□□□□ -1.55
CCDC88C-206ENST00000553437 CXCL6P80162 114 aa5.37□□□□□ -1.55
CCDC88C-206ENST00000553437 KRTAP19-4Q3LI73 84 aa5.37□□□□□ -1.55
CCDC88C-206ENST00000553437 ATP11AUNQ6ZP68 121 aa5.37□□□□□ -1.55
CCDC88C-206ENST00000553437 A0A087WVE0 104 aa5.36□□□□□ -1.55
CCDC88C-206ENST00000553437 DSCR10P59022 87 aa5.36□□□□□ -1.55
CCDC88C-206ENST00000553437 SERP2Q8N6R1 65 aa5.36□□□□□ -1.55
CCDC88C-206ENST00000553437 LINC00472Q9H8W2 130 aa5.36□□□□□ -1.55
CCDC88C-206ENST00000553437 A0A1B0GW54 56 aa5.35□□□□□ -1.55
CCDC88C-206ENST00000553437 IGKV4-1P06312 121 aa5.34□□□□□ -1.55
CCDC88C-206ENST00000553437 FLGP20930 4061 aaPredicted RBP5.34□□□□□ -1.55
CCDC88C-206ENST00000553437 KRTAP16-1A8MUX0 517 aa5.33□□□□□ -1.56
CCDC88C-206ENST00000553437 DEFB116Q30KQ4 102 aa5.33□□□□□ -1.56
CCDC88C-206ENST00000553437 NOTCH2NLQ7Z3S9 236 aa5.33□□□□□ -1.56
CCDC88C-206ENST00000553437 LINC00313P59037 77 aa5.32□□□□□ -1.56
CCDC88C-206ENST00000553437 SMIM20Q8N5G0 67 aa5.32□□□□□ -1.56
CCDC88C-206ENST00000553437 NREPQ16612 68 aa5.3□□□□□ -1.56
CCDC88C-206ENST00000553437 COX6B2Q6YFQ2 88 aa5.3□□□□□ -1.56
CCDC88C-206ENST00000553437 TRAV7A0A075B6U4 112 aa5.29□□□□□ -1.56
CCDC88C-206ENST00000553437 KRTAP10-6P60371 365 aaPredicted RBP5.29□□□□□ -1.56
CCDC88C-206ENST00000553437 IGHV6-1A0A0B4J1U7 121 aa5.27□□□□□ -1.57
CCDC88C-206ENST00000553437 A0A1B0GVX0 72 aa5.26□□□□□ -1.57
CCDC88C-206ENST00000553437 BPY2O14599 106 aa5.26□□□□□ -1.57
CCDC88C-206ENST00000553437 TMEM258P61165 79 aa5.26□□□□□ -1.57
CCDC88C-206ENST00000553437 C8orf87E5RJ46 101 aa5.24□□□□□ -1.57
CCDC88C-206ENST00000553437 M0R2T5 61 aa5.24□□□□□ -1.57
CCDC88C-206ENST00000553437 J3KT08 172 aa5.23□□□□□ -1.57
CCDC88C-206ENST00000553437 C20orf197Q8N268 126 aa5.21□□□□□ -1.58
CCDC88C-206ENST00000553437 CYSTM1Q9H1C7 97 aa5.21□□□□□ -1.58
CCDC88C-206ENST00000553437 RPS28P62857 69 aaKnown RBP5.2□□□□□ -1.58
CCDC88C-206ENST00000553437 KLKP1Q107X0 134 aa5.2□□□□□ -1.58
CCDC88C-206ENST00000553437 MPLKIPQ8TAP9 179 aa5.2□□□□□ -1.58
CCDC88C-206ENST00000553437 A8MWP4 228 aa5.19□□□□□ -1.58
CCDC88C-206ENST00000553437 HRES1P13985 223 aa5.19□□□□□ -1.58
CCDC88C-206ENST00000553437 NDUFC1O43677 76 aa5.18□□□□□ -1.58
CCDC88C-206ENST00000553437 NDUFB1O75438 58 aa5.18□□□□□ -1.58
CCDC88C-206ENST00000553437 Q8N9L7 120 aa5.18□□□□□ -1.58
CCDC88C-206ENST00000553437 Q8N9P0 234 aaPredicted RBP5.18□□□□□ -1.58
CCDC88C-206ENST00000553437 C8orf17Q9NRJ1 99 aa5.17□□□□□ -1.58
CCDC88C-206ENST00000553437 FAM236DA0A1B0GTK5 79 aa5.16□□□□□ -1.58
CCDC88C-206ENST00000553437 FAM236CP0DP71 79 aa5.16□□□□□ -1.58
CCDC88C-206ENST00000553437 ZCCHC13Q8WW36 166 aaKnown RBP5.16□□□□□ -1.58
CCDC88C-206ENST00000553437 OCR1Q9BZK8 76 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms