RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 Q8N9P0 234 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-212ENST00000552491 LIMD2Q9BT23 127 aa3.31□□□□□ -1.88
LIMA1-212ENST00000552491 Q96NJ1 140 aa3.3□□□□□ -1.88
LIMA1-212ENST00000552491 IGLV7-46A0A075B6I9 117 aa3.29□□□□□ -1.88
LIMA1-212ENST00000552491 PMAIP1Q13794 54 aa3.29□□□□□ -1.88
LIMA1-212ENST00000552491 KRTAP13-1Q8IUC0 172 aa3.29□□□□□ -1.88
LIMA1-212ENST00000552491 H3BS24 57 aa3.29□□□□□ -1.88
LIMA1-212ENST00000552491 ASB16-AS1Q495Z4 193 aa3.28□□□□□ -1.88
LIMA1-212ENST00000552491 TP53AIP1Q9HCN2 124 aa3.28□□□□□ -1.88
LIMA1-212ENST00000552491 KMT2AQ03164 3969 aa3.28□□□□□ -1.88
LIMA1-212ENST00000552491 UBE2DNLQ8IWF7 75 aa3.28□□□□□ -1.88
LIMA1-212ENST00000552491 APLNQ9ULZ1 77 aa3.28□□□□□ -1.88
LIMA1-212ENST00000552491 CHKB-CPT1BH3BT56 60 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 PCOTHQ58A44 107 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 COA5Q86WW8 74 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 STARD9Q9P2P6 4700 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 IGLV9-49A0A0B4J1Y8 123 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 SEC61GP60059 68 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 CD164Q04900 197 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 MOBPQ13875 183 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 PRR15LQ9BU68 103 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 DNAH17Q9UFH2 4485 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 VPS13DQ5THJ4 4388 aa3.27□□□□□ -1.89
LIMA1-212ENST00000552491 Q6ZR54 194 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 DNAH2Q9P225 4427 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 LOC101927531A0A1B0GV80 90 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 Q75L30 129 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 A0A087X002 238 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 NOTCH2NLQ7Z3S9 236 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 C8orf17Q9NRJ1 99 aa3.26□□□□□ -1.89
LIMA1-212ENST00000552491 Q6ZRN7 208 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-212ENST00000552491 LCA10Q71F78 164 aa3.25□□□□□ -1.89
LIMA1-212ENST00000552491 ANAPC11Q9NYG5 84 aa3.25□□□□□ -1.89
LIMA1-212ENST00000552491 FBN3Q75N90 2809 aa3.25□□□□□ -1.89
LIMA1-212ENST00000552491 LINC00483Q53H64 154 aa3.25□□□□□ -1.89
LIMA1-212ENST00000552491 DNHD1Q96M86 4753 aa3.24□□□□□ -1.89
LIMA1-212ENST00000552491 ALMS1Q8TCU4 4167 aa3.24□□□□□ -1.89
LIMA1-212ENST00000552491 PRKDCP78527 4128 aaKnown RBP3.24□□□□□ -1.89
LIMA1-212ENST00000552491 IGHV6-1A0A0B4J1U7 121 aa3.24□□□□□ -1.89
LIMA1-212ENST00000552491 A0A1B0GVX0 72 aa3.24□□□□□ -1.89
LIMA1-212ENST00000552491 NBDYA0A0U1RRE5 68 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 ATP11AUNQ6ZP68 121 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 SPACA4Q8TDM5 124 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 WWC2-AS2Q96NR7 200 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 A6NED7 52 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 NDUFS5O43920 106 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 MRPL34Q9BQ48 92 aaKnown RBP3.23□□□□□ -1.89
LIMA1-212ENST00000552491 ZNF706Q9Y5V0 76 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-212ENST00000552491 LINC01558Q9Y6Z2 57 aa3.23□□□□□ -1.89
LIMA1-212ENST00000552491 CDK2AP2O75956 126 aa3.22□□□□□ -1.89
LIMA1-212ENST00000552491 SPAG11AQ6PDA7 123 aa3.22□□□□□ -1.89
LIMA1-212ENST00000552491 PLAC8Q9NZF1 115 aa3.22□□□□□ -1.89
LIMA1-212ENST00000552491 DNAH6Q9C0G6 4158 aa3.22□□□□□ -1.89
LIMA1-212ENST00000552491 DNAH11Q96DT5 4516 aa3.21□□□□□ -1.89
LIMA1-212ENST00000552491 HRES1P13985 223 aa3.21□□□□□ -1.9
LIMA1-212ENST00000552491 SPTSSBQ8NFR3 76 aa3.21□□□□□ -1.9
LIMA1-212ENST00000552491 CDC42SE1Q9NRR8 79 aa3.21□□□□□ -1.9
LIMA1-212ENST00000552491 PSORS1C2Q9UIG4 136 aa3.21□□□□□ -1.9
LIMA1-212ENST00000552491 Q5W150 140 aa3.2□□□□□ -1.9
LIMA1-212ENST00000552491 KTN1-AS1Q86SY8 53 aa3.2□□□□□ -1.9
LIMA1-212ENST00000552491 IGLV5-52A0A0A0MRZ9 124 aa3.19□□□□□ -1.9
LIMA1-212ENST00000552491 A0A087WTM6 91 aa3.19□□□□□ -1.9
LIMA1-212ENST00000552491 ZNF861PO60384 105 aa3.19□□□□□ -1.9
LIMA1-212ENST00000552491 SPINK7P58062 85 aa3.19□□□□□ -1.9
LIMA1-212ENST00000552491 KRTAP13-3Q3SY46 172 aa3.19□□□□□ -1.9
LIMA1-212ENST00000552491 TGP01266 2768 aa3.18□□□□□ -1.9
LIMA1-212ENST00000552491 A6NN06 94 aa3.18□□□□□ -1.9
LIMA1-212ENST00000552491 SPINK6Q6UWN8 80 aa3.18□□□□□ -1.9
LIMA1-212ENST00000552491 PRR26Q8N8Z3 221 aa3.18□□□□□ -1.9
LIMA1-212ENST00000552491 DNAH5Q8TE73 4624 aa3.18□□□□□ -1.9
LIMA1-212ENST00000552491 NUPR2A6NF83 97 aa3.18□□□□□ -1.9
LIMA1-212ENST00000552491 RTL8CO15255 209 aa3.17□□□□□ -1.9
LIMA1-212ENST00000552491 MEGF8Q7Z7M0 2845 aa3.17□□□□□ -1.9
LIMA1-212ENST00000552491 ACYP2P14621 99 aa3.15□□□□□ -1.91
LIMA1-212ENST00000552491 C8orf87E5RJ46 101 aa3.15□□□□□ -1.91
LIMA1-212ENST00000552491 CIRBP-AS1Q8TBR5 109 aa3.15□□□□□ -1.91
LIMA1-212ENST00000552491 LRP1BQ9NZR2 4599 aa3.14□□□□□ -1.91
LIMA1-212ENST00000552491 IGLV7-43P04211 117 aa3.14□□□□□ -1.91
LIMA1-212ENST00000552491 SSBP3-AS1Q7Z2R9 100 aa3.14□□□□□ -1.91
LIMA1-212ENST00000552491 RBM12B-AS1Q9P1G2 102 aa3.14□□□□□ -1.91
LIMA1-212ENST00000552491 C7orf65Q6ZTY9 151 aa3.13□□□□□ -1.91
LIMA1-212ENST00000552491 RETNLBQ9BQ08 111 aa3.13□□□□□ -1.91
LIMA1-212ENST00000552491 DMAC1Q96GE9 116 aa3.13□□□□□ -1.91
LIMA1-212ENST00000552491 VPS13BQ7Z7G8 4022 aa3.12□□□□□ -1.91
LIMA1-212ENST00000552491 LINC00313P59037 77 aa3.12□□□□□ -1.91
LIMA1-212ENST00000552491 PKD1P98161 4303 aa3.1□□□□□ -1.91
LIMA1-212ENST00000552491 KRTAP13-2Q52LG2 175 aa3.1□□□□□ -1.91
LIMA1-212ENST00000552491 IGKV2-30P06310 120 aa3.09□□□□□ -1.91
LIMA1-212ENST00000552491 FAT2Q9NYQ8 4349 aa3.09□□□□□ -1.91
LIMA1-212ENST00000552491 KRTAP16-1A8MUX0 517 aa3.09□□□□□ -1.91
LIMA1-212ENST00000552491 Q8N1X5 172 aa3.09□□□□□ -1.91
LIMA1-212ENST00000552491 HYDINQ4G0P3 5121 aa3.09□□□□□ -1.92
LIMA1-212ENST00000552491 A0A1B0GU69 56 aa3.08□□□□□ -1.92
LIMA1-212ENST00000552491 C1orf134Q5TEV5 83 aa3.08□□□□□ -1.92
LIMA1-212ENST00000552491 KRTAP3-1Q9BYR8 98 aa3.08□□□□□ -1.92
LIMA1-212ENST00000552491 SPATA8Q6RVD6 105 aa3.07□□□□□ -1.92
LIMA1-212ENST00000552491 ADM2Q7Z4H4 148 aa3.07□□□□□ -1.92
LIMA1-212ENST00000552491 PRAC1Q96KF2 57 aa3.07□□□□□ -1.92
LIMA1-212ENST00000552491 UQCR11O14957 56 aa3.05□□□□□ -1.92
LIMA1-212ENST00000552491 PLA2G1BP04054 148 aaKnown RBP3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms