RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NPC2P61916 151 aa4.72□□□□□ -1.65
USP28-215ENST00000545608 Q8N377 158 aa4.72□□□□□ -1.65
USP28-215ENST00000545608 RPS29P62273 56 aaKnown RBP4.71□□□□□ -1.66
USP28-215ENST00000545608 Q6ZRX8 168 aa4.71□□□□□ -1.66
USP28-215ENST00000545608 H3BQ85 93 aa4.7□□□□□ -1.66
USP28-215ENST00000545608 IGLV6-57P01721 117 aa4.7□□□□□ -1.66
USP28-215ENST00000545608 SOSTDC1Q6X4U4 206 aa4.7□□□□□ -1.66
USP28-215ENST00000545608 ATP5EP56381 51 aaPredicted RBP4.69□□□□□ -1.66
USP28-215ENST00000545608 LINC01547P58512 204 aaPredicted RBP4.69□□□□□ -1.66
USP28-215ENST00000545608 ST20-AS1Q8NBB2 130 aa4.69□□□□□ -1.66
USP28-215ENST00000545608 ORMDL1Q9P0S3 153 aa4.69□□□□□ -1.66
USP28-215ENST00000545608 TRAV23DV6A0A075B6W5 121 aa4.68□□□□□ -1.66
USP28-215ENST00000545608 IGKV2-30P06310 120 aa4.68□□□□□ -1.66
USP28-215ENST00000545608 OBSCN-AS1Q96MR7 158 aa4.68□□□□□ -1.66
USP28-215ENST00000545608 UBL5Q9BZL1 73 aa4.68□□□□□ -1.66
USP28-215ENST00000545608 SERP1Q9Y6X1 66 aa4.68□□□□□ -1.66
USP28-215ENST00000545608 TMEM256-PLSCR3K7ERE1 68 aa4.67□□□□□ -1.66
USP28-215ENST00000545608 NDUFC1O43677 76 aa4.67□□□□□ -1.66
USP28-215ENST00000545608 ZNF73O43830 326 aaPredicted RBP4.67□□□□□ -1.66
USP28-215ENST00000545608 CCKP06307 115 aa4.67□□□□□ -1.66
USP28-215ENST00000545608 FAM236DA0A1B0GTK5 79 aa4.66□□□□□ -1.66
USP28-215ENST00000545608 FAM236CP0DP71 79 aa4.66□□□□□ -1.66
USP28-215ENST00000545608 IGKV3D-7A0A0C4DH55 119 aa4.65□□□□□ -1.67
USP28-215ENST00000545608 PDE6GP18545 87 aa4.65□□□□□ -1.67
USP28-215ENST00000545608 C14orf132Q9NPU4 83 aa4.65□□□□□ -1.67
USP28-215ENST00000545608 PRO0628Q9UI54 55 aa4.65□□□□□ -1.67
USP28-215ENST00000545608 TRAV7A0A075B6U4 112 aa4.64□□□□□ -1.67
USP28-215ENST00000545608 SMIM26A0A096LP01 95 aa4.64□□□□□ -1.67
USP28-215ENST00000545608 SMIM11BQ8TCY0 68 aa4.64□□□□□ -1.67
USP28-215ENST00000545608 LINC00846Q9NV44 126 aa4.64□□□□□ -1.67
USP28-215ENST00000545608 SPRR1BP22528 89 aa4.63□□□□□ -1.67
USP28-215ENST00000545608 LCE5AQ5TCM9 118 aa4.63□□□□□ -1.67
USP28-215ENST00000545608 HRCT1Q6UXD1 115 aa4.63□□□□□ -1.67
USP28-215ENST00000545608 FAM218AQ96MZ4 157 aa4.63□□□□□ -1.67
USP28-215ENST00000545608 KRTAP19-2Q3LHN2 52 aa4.62□□□□□ -1.67
USP28-215ENST00000545608 DSCR8Q96T75 97 aa4.62□□□□□ -1.67
USP28-215ENST00000545608 PCOTHQ58A44 107 aa4.61□□□□□ -1.67
USP28-215ENST00000545608 LCE1DQ5T752 114 aa4.61□□□□□ -1.67
USP28-215ENST00000545608 C9orf92A6NGG3 77 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 C4orf26Q17RF5 130 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 Q5XG85 94 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 C20orf197Q8N268 126 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 LIMD2Q9BT23 127 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 DHRS4-AS1Q9P1J3 65 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 LAMTOR3Q9UHA4 124 aa4.6□□□□□ -1.67
USP28-215ENST00000545608 IGLV8-61A0A075B6I0 122 aa4.59□□□□□ -1.67
USP28-215ENST00000545608 COX7BP24311 80 aa4.59□□□□□ -1.67
USP28-215ENST00000545608 ELOF1P60002 83 aaKnown RBP4.59□□□□□ -1.67
USP28-215ENST00000545608 CXCL6P80162 114 aa4.59□□□□□ -1.67
USP28-215ENST00000545608 KLKP1Q107X0 134 aa4.59□□□□□ -1.67
USP28-215ENST00000545608 C6orf99Q4VX62 202 aa4.59□□□□□ -1.67
USP28-215ENST00000545608 DEFB105AQ8NG35 78 aa4.59□□□□□ -1.67
USP28-215ENST00000545608 A0A087WVE0 104 aa4.58□□□□□ -1.68
USP28-215ENST00000545608 LOC110117498A0A087WWA1 95 aa4.58□□□□□ -1.68
USP28-215ENST00000545608 MT1HP80294 61 aa4.58□□□□□ -1.68
USP28-215ENST00000545608 RBM3P98179 157 aaKnown RBP4.58□□□□□ -1.68
USP28-215ENST00000545608 SMIM29Q86T20 159 aa4.57□□□□□ -1.68
USP28-215ENST00000545608 CRCT1Q9UGL9 99 aa4.57□□□□□ -1.68
USP28-215ENST00000545608 KRTAP4-8A0A0G2JLE6 195 aa4.56□□□□□ -1.68
USP28-215ENST00000545608 A0A0G2JQZ4 141 aa4.56□□□□□ -1.68
USP28-215ENST00000545608 CD164Q04900 197 aa4.56□□□□□ -1.68
USP28-215ENST00000545608 H7BZZ5 65 aa4.55□□□□□ -1.68
USP28-215ENST00000545608 C1orf195Q5TG92 126 aa4.55□□□□□ -1.68
USP28-215ENST00000545608 TRBV7-6A0A0J9YX20 115 aa4.54□□□□□ -1.68
USP28-215ENST00000545608 CYSTM1Q9H1C7 97 aa4.54□□□□□ -1.68
USP28-215ENST00000545608 IGLV5-48A0A075B6I7 105 aa4.53□□□□□ -1.68
USP28-215ENST00000545608 V9GYY9 64 aa4.53□□□□□ -1.68
USP28-215ENST00000545608 F8WEM9 126 aa4.52□□□□□ -1.69
USP28-215ENST00000545608 Q6ZQT0 140 aa4.52□□□□□ -1.69
USP28-215ENST00000545608 KRTAP10-6P60371 365 aaPredicted RBP4.51□□□□□ -1.69
USP28-215ENST00000545608 RPL37P61927 97 aaKnown RBP4.51□□□□□ -1.69
USP28-215ENST00000545608 LINC00575Q6W349 94 aa4.51□□□□□ -1.69
USP28-215ENST00000545608 Q6ZVQ6 151 aa4.51□□□□□ -1.69
USP28-215ENST00000545608 IGKV2D-30A0A075B6S6 120 aa4.49□□□□□ -1.69
USP28-215ENST00000545608 NREPQ16612 68 aa4.49□□□□□ -1.69
USP28-215ENST00000545608 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.49□□□□□ -1.69
USP28-215ENST00000545608 Q8N9P0 234 aaPredicted RBP4.49□□□□□ -1.69
USP28-215ENST00000545608 BRK1Q8WUW1 75 aa4.49□□□□□ -1.69
USP28-215ENST00000545608 A0A1B0GW54 56 aa4.48□□□□□ -1.69
USP28-215ENST00000545608 BPY2O14599 106 aa4.48□□□□□ -1.69
USP28-215ENST00000545608 TMEM254Q8TBM7 123 aa4.48□□□□□ -1.69
USP28-215ENST00000545608 FSIP2Q5CZC0 6907 aa4.47□□□□□ -1.69
USP28-215ENST00000545608 SNURFQ9Y675 71 aa4.47□□□□□ -1.69
USP28-215ENST00000545608 TRBV7-4A0A0J9YYF1 115 aa4.46□□□□□ -1.7
USP28-215ENST00000545608 M0R2T5 61 aa4.46□□□□□ -1.7
USP28-215ENST00000545608 COX6B2Q6YFQ2 88 aa4.46□□□□□ -1.7
USP28-215ENST00000545608 SEC61GP60059 68 aa4.45□□□□□ -1.7
USP28-215ENST00000545608 IGFL1Q6UW32 110 aa4.43□□□□□ -1.7
USP28-215ENST00000545608 Q6ZQY7 126 aa4.43□□□□□ -1.7
USP28-215ENST00000545608 NDUFB1O75438 58 aa4.42□□□□□ -1.7
USP28-215ENST00000545608 PRR15Q8IV56 129 aa4.42□□□□□ -1.7
USP28-215ENST00000545608 Q1T7F1 81 aa4.4□□□□□ -1.71
USP28-215ENST00000545608 PMAIP1Q13794 54 aa4.39□□□□□ -1.71
USP28-215ENST00000545608 ATP11AUNQ6ZP68 121 aa4.39□□□□□ -1.71
USP28-215ENST00000545608 KRTAP4-9Q9BYQ8 210 aa4.39□□□□□ -1.71
USP28-215ENST00000545608 OCR1Q9BZK8 76 aa4.39□□□□□ -1.71
USP28-215ENST00000545608 PRAC1Q96KF2 57 aa4.38□□□□□ -1.71
USP28-215ENST00000545608 FLGP20930 4061 aaPredicted RBP4.38□□□□□ -1.71
USP28-215ENST00000545608 IGKV4-1P06312 121 aa4.37□□□□□ -1.71
USP28-215ENST00000545608 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms