RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 KMT2BQ9UMN6 2715 aaPredicted RBP3.4□□□□□ -1.86
VPS50-220ENST00000544910 KRTAP16-1A8MUX0 517 aa3.39□□□□□ -1.87
VPS50-220ENST00000544910 ATRQ13535 2644 aa3.39□□□□□ -1.87
VPS50-220ENST00000544910 CELSR1Q9NYQ6 3014 aa3.39□□□□□ -1.87
VPS50-220ENST00000544910 KRTAP21-3Q3LHN1 58 aa3.38□□□□□ -1.87
VPS50-220ENST00000544910 RPL37P61927 97 aaKnown RBP3.38□□□□□ -1.87
VPS50-220ENST00000544910 TEP1Q99973 2627 aaKnown RBP3.37□□□□□ -1.87
VPS50-220ENST00000544910 NOTCH2NLQ7Z3S9 236 aa3.37□□□□□ -1.87
VPS50-220ENST00000544910 PDZD2O15018 2839 aa3.37□□□□□ -1.87
VPS50-220ENST00000544910 MAP1AP78559 2803 aaPredicted RBP3.37□□□□□ -1.87
VPS50-220ENST00000544910 ZANQ9Y493 2812 aa3.37□□□□□ -1.87
VPS50-220ENST00000544910 H1FX-AS1Q4G0G2 97 aa3.37□□□□□ -1.87
VPS50-220ENST00000544910 CRYBG3Q68DQ2 2970 aa3.36□□□□□ -1.87
VPS50-220ENST00000544910 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
VPS50-220ENST00000544910 NBEAL2Q6ZNJ1 2754 aa3.36□□□□□ -1.87
VPS50-220ENST00000544910 CELSR2Q9HCU4 2923 aa3.36□□□□□ -1.87
VPS50-220ENST00000544910 NBPF19A0A087WUL8 3843 aa3.36□□□□□ -1.87
VPS50-220ENST00000544910 CSMD2Q7Z408 3487 aa3.34□□□□□ -1.87
VPS50-220ENST00000544910 MXRA5Q9NR99 2828 aa3.33□□□□□ -1.88
VPS50-220ENST00000544910 ASH1LQ9NR48 2969 aaKnown RBP3.33□□□□□ -1.88
VPS50-220ENST00000544910 KRTAP13-2Q52LG2 175 aa3.32□□□□□ -1.88
VPS50-220ENST00000544910 CAMK2N1Q7Z7J9 78 aa3.32□□□□□ -1.88
VPS50-220ENST00000544910 S4R3F8 94 aa3.32□□□□□ -1.88
VPS50-220ENST00000544910 ITPR2Q14571 2701 aa3.32□□□□□ -1.88
VPS50-220ENST00000544910 COX6B2Q6YFQ2 88 aa3.31□□□□□ -1.88
VPS50-220ENST00000544910 RPS29P62273 56 aaKnown RBP3.3□□□□□ -1.88
VPS50-220ENST00000544910 FLNBO75369 2602 aaKnown RBP3.29□□□□□ -1.88
VPS50-220ENST00000544910 TENM4Q6N022 2769 aa3.29□□□□□ -1.88
VPS50-220ENST00000544910 HUWE1Q7Z6Z7 4374 aaKnown RBP3.28□□□□□ -1.88
VPS50-220ENST00000544910 NSD1Q96L73 2696 aaPredicted RBP3.28□□□□□ -1.88
VPS50-220ENST00000544910 HIVEP1P15822 2718 aa3.28□□□□□ -1.88
VPS50-220ENST00000544910 ZNF469Q96JG9 3925 aaPredicted RBP3.27□□□□□ -1.89
VPS50-220ENST00000544910 MAST4O15021 2626 aa3.27□□□□□ -1.89
VPS50-220ENST00000544910 ADM2Q7Z4H4 148 aa3.27□□□□□ -1.89
VPS50-220ENST00000544910 Q6ZSA8 131 aa3.26□□□□□ -1.89
VPS50-220ENST00000544910 A8MU10 97 aa3.26□□□□□ -1.89
VPS50-220ENST00000544910 CUBNO60494 3623 aa3.26□□□□□ -1.89
VPS50-220ENST00000544910 R4GN34 69 aa3.24□□□□□ -1.89
VPS50-220ENST00000544910 Q5VSD8 79 aa3.24□□□□□ -1.89
VPS50-220ENST00000544910 NDUFAF8A1L188 74 aa3.24□□□□□ -1.89
VPS50-220ENST00000544910 KRTAP1-4P0C5Y4 121 aa3.23□□□□□ -1.89
VPS50-220ENST00000544910 J3QL48 77 aa3.21□□□□□ -1.89
VPS50-220ENST00000544910 NF1P21359 2839 aa3.21□□□□□ -1.9
VPS50-220ENST00000544910 OTOGQ6ZRI0 2925 aa3.2□□□□□ -1.9
VPS50-220ENST00000544910 A8MUU9 505 aa3.19□□□□□ -1.9
VPS50-220ENST00000544910 CMYA5Q8N3K9 4069 aa3.19□□□□□ -1.9
VPS50-220ENST00000544910 M0QZ58 72 aa3.18□□□□□ -1.9
VPS50-220ENST00000544910 STAB1Q9NY15 2570 aa3.18□□□□□ -1.9
VPS50-220ENST00000544910 KRTAP17-1Q9BYP8 105 aa3.18□□□□□ -1.9
VPS50-220ENST00000544910 BAHCC1Q9P281 2608 aa3.18□□□□□ -1.9
VPS50-220ENST00000544910 NIPBLQ6KC79 2804 aaeCLIP3.18□□□□□ -1.9
VPS50-220ENST00000544910 TRRAPQ9Y4A5 3859 aa3.18□□□□□ -1.9
VPS50-220ENST00000544910 KRTAP13-3Q3SY46 172 aa3.17□□□□□ -1.9
VPS50-220ENST00000544910 C20orf166-AS1Q96NR2 134 aa3.17□□□□□ -1.9
VPS50-220ENST00000544910 DNAH1Q9P2D7 4330 aa3.16□□□□□ -1.9
VPS50-220ENST00000544910 SEC61BP60468 96 aaKnown RBP3.16□□□□□ -1.9
VPS50-220ENST00000544910 PLAC4Q8WY50 150 aa3.16□□□□□ -1.9
VPS50-220ENST00000544910 ALMS1Q8TCU4 4167 aa3.16□□□□□ -1.9
VPS50-220ENST00000544910 COL6A5A8TX70 2615 aa3.15□□□□□ -1.9
VPS50-220ENST00000544910 DNAH3Q8TD57 4116 aa3.15□□□□□ -1.91
VPS50-220ENST00000544910 NOTCH1P46531 2555 aa3.15□□□□□ -1.91
VPS50-220ENST00000544910 MGAM2Q2M2H8 2515 aa3.14□□□□□ -1.91
VPS50-220ENST00000544910 DNAH9Q9NYC9 4486 aa3.14□□□□□ -1.91
VPS50-220ENST00000544910 TENM1Q9UKZ4 2725 aa3.13□□□□□ -1.91
VPS50-220ENST00000544910 ANK2Q01484 3957 aa3.13□□□□□ -1.91
VPS50-220ENST00000544910 TENM3Q9P273 2699 aa3.13□□□□□ -1.91
VPS50-220ENST00000544910 NBEAL1Q6ZS30 2694 aa3.12□□□□□ -1.91
VPS50-220ENST00000544910 FBN1P35555 2871 aaKnown RBP3.1□□□□□ -1.91
VPS50-220ENST00000544910 VWFP04275 2813 aa3.1□□□□□ -1.91
VPS50-220ENST00000544910 A0A1B0GVY2 172 aa3.1□□□□□ -1.91
VPS50-220ENST00000544910 DYNC2H1Q8NCM8 4307 aaKnown RBP3.09□□□□□ -1.91
VPS50-220ENST00000544910 PP632Q6XCG6 107 aa3.08□□□□□ -1.92
VPS50-220ENST00000544910 DNAH10Q8IVF4 4471 aa3.06□□□□□ -1.92
VPS50-220ENST00000544910 H0YAA0 97 aa3.05□□□□□ -1.92
VPS50-220ENST00000544910 XP32Q5T750 250 aa3.05□□□□□ -1.92
VPS50-220ENST00000544910 M0R2T5 61 aa3.04□□□□□ -1.92
VPS50-220ENST00000544910 P0C880 135 aa3.04□□□□□ -1.92
VPS50-220ENST00000544910 VPS13DQ5THJ4 4388 aa3.04□□□□□ -1.92
VPS50-220ENST00000544910 DNAH17Q9UFH2 4485 aa3.03□□□□□ -1.92
VPS50-220ENST00000544910 PLECQ15149 4684 aaKnown RBP3.03□□□□□ -1.92
VPS50-220ENST00000544910 TNP1P09430 55 aa3.02□□□□□ -1.93
VPS50-220ENST00000544910 DNAH6Q9C0G6 4158 aa3.02□□□□□ -1.93
VPS50-220ENST00000544910 C10orf95Q9H7T3 257 aa3.01□□□□□ -1.93
VPS50-220ENST00000544910 DMBT1Q9UGM3 2413 aaPredicted RBP3□□□□□ -1.93
VPS50-220ENST00000544910 STAB2Q8WWQ8 2551 aa3□□□□□ -1.93
VPS50-220ENST00000544910 KRTAP10-8P60410 259 aa2.99□□□□□ -1.93
VPS50-220ENST00000544910 DNAH8Q96JB1 4490 aa2.97□□□□□ -1.93
VPS50-220ENST00000544910 TPRXLQ17RH7 258 aa2.97□□□□□ -1.93
VPS50-220ENST00000544910 PKD1L1Q8TDX9 2849 aa2.97□□□□□ -1.93
VPS50-220ENST00000544910 DNAH2Q9P225 4427 aa2.97□□□□□ -1.93
VPS50-220ENST00000544910 KRTAP3-1Q9BYR8 98 aa2.96□□□□□ -1.94
VPS50-220ENST00000544910 STARD9Q9P2P6 4700 aa2.95□□□□□ -1.94
VPS50-220ENST00000544910 DNAH7Q8WXX0 4024 aa2.94□□□□□ -1.94
VPS50-220ENST00000544910 FLG2Q5D862 2391 aaPredicted RBP2.94□□□□□ -1.94
VPS50-220ENST00000544910 DNAH11Q96DT5 4516 aa2.92□□□□□ -1.94
VPS50-220ENST00000544910 LYSTQ99698 3801 aa2.92□□□□□ -1.94
VPS50-220ENST00000544910 KRTAP10-4P60372 401 aaPredicted RBP2.92□□□□□ -1.94
VPS50-220ENST00000544910 HECTD4Q9Y4D8 3996 aa2.91□□□□□ -1.94
VPS50-220ENST00000544910 PRKDCP78527 4128 aaKnown RBP2.89□□□□□ -1.95
VPS50-220ENST00000544910 FRAS1Q86XX4 4008 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms