RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	PRUNE2	Q8WUY3	3088 aa		0.65	□□□□□ -2.31
LEMD3-205	ENST00000544506	CEP290	O15078	2479 aa		0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	CCDC168	Q8NDH2	2452 aa		0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	SRRM2	Q9UQ35	2752 aa	Known RBP	0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	DSP	P15924	2871 aa	Known RBP	0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	ABCA2	Q9BZC7	2435 aa		0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	COL6A5	A8TX70	2615 aa		0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	ITPR1	Q14643	2758 aa		0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	PRRC2C	Q9Y520	2896 aa	Known RBP	0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	ZZEF1	O43149	2961 aa		0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	MAP1A	P78559	2803 aa	Predicted RBP	0.64	□□□□□ -2.31
LEMD3-205	ENST00000544506	COL6A3	P12111	3177 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	PKD1L2	Q7Z442	2459 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	NAV2	Q8IVL1	2488 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	F8	P00451	2351 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	DEFB4A	O15263	64 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	RPS29	P62273	56 aa	Known RBP	0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506		Q5VSD8	79 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	NBEA	Q8NFP9	2946 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	JMJD1C	Q15652	2540 aa		0.63	□□□□□ -2.31
LEMD3-205	ENST00000544506	ABCA12	Q86UK0	2595 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	DOPEY1	Q5JWR5	2465 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	RIF1	Q5UIP0	2472 aa	Known RBP	0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	TRIO	O75962	3097 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	KALRN	O60229	2985 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	ASH1L	Q9NR48	2969 aa	Known RBP	0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	TLN1	Q9Y490	2541 aa	Known RBP	0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	ACAN	P16112	2415 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	FRYL	O94915	3013 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	TTC28	Q96AY4	2481 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	CENPE	Q02224	2701 aa		0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.62	□□□□□ -2.31
LEMD3-205	ENST00000544506	CHD6	Q8TD26	2715 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	LRBA	P50851	2863 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	TRANK1	O15050	2925 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	CELSR2	Q9HCU4	2923 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	POLQ	O75417	2590 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	PTPN13	Q12923	2485 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	FRY	Q5TBA9	3013 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	DNAH12	Q6ZR08	3092 aa		0.61	□□□□□ -2.31
LEMD3-205	ENST00000544506	AKAP13	Q12802	2813 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	HIVEP3	Q5T1R4	2406 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	CHD9	Q3L8U1	2897 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	OTOG	Q6ZRI0	2925 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	SRCAP	Q6ZRS2	3230 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	TLN2	Q9Y4G6	2542 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	APC	P25054	2843 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	TNP1	P09430	55 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	KRTAP21-1	Q3LI58	79 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	UTP20	O75691	2785 aa	Known RBP	0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	TACC2	O95359	2948 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	CFAP54	Q96N23	3096 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	LRRK2	Q5S007	2527 aa		0.6	□□□□□ -2.31
LEMD3-205	ENST00000544506	VPS13A	Q96RL7	3174 aa		0.59	□□□□□ -2.31
LEMD3-205	ENST00000544506	DMXL1	Q9Y485	3027 aa		0.59	□□□□□ -2.31
LEMD3-205	ENST00000544506	REV3L	O60673	3130 aa		0.59	□□□□□ -2.31
LEMD3-205	ENST00000544506	VWF	P04275	2813 aa		0.59	□□□□□ -2.31
LEMD3-205	ENST00000544506	C9orf92	A6NGG3	77 aa		0.59	□□□□□ -2.31
LEMD3-205	ENST00000544506	CFAP46	Q8IYW2	2715 aa		0.59	□□□□□ -2.32
LEMD3-205	ENST00000544506	USP9X	Q93008	2570 aa	Predicted RBP	0.59	□□□□□ -2.32
LEMD3-205	ENST00000544506	MYO9A	B2RTY4	2548 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	LAMA1	P25391	3075 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	SETD2	Q9BYW2	2564 aa	Predicted RBP	0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	EPG5	Q9HCE0	2579 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	TEX15	Q9BXT5	2789 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	WDFY4	Q6ZS81	3184 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	CELSR1	Q9NYQ6	3014 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	MTOR	P42345	2549 aa		0.58	□□□□□ -2.32
LEMD3-205	ENST00000544506	SETX	Q7Z333	2677 aa	Known RBP	0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	PCNT	O95613	3336 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	CACNA1A	O00555	2505 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	C5orf42	Q9H799	3197 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	MYO18B	Q8IUG5	2567 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	CHD8	Q9HCK8	2581 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	RANBP2	P49792	3224 aa	Known RBP	0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	HTT	P42858	3142 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	ZNF292	O60281	2723 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	CENPF	P49454	3210 aa		0.57	□□□□□ -2.32
LEMD3-205	ENST00000544506	GOLGB1	Q14789	3259 aa	Known RBP	0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	MEGF8	Q7Z7M0	2845 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	BDP1	A6H8Y1	2624 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	CFAP47	Q6ZTR5	3102 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	DCHS2	Q6V1P9	2916 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	EP400	Q96L91	3159 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	FASN	P49327	2511 aa	Known RBP	0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	BOD1L1	Q8NFC6	3051 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	COL12A1	Q99715	3063 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	NF1	P21359	2839 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	LAMA2	P24043	3122 aa	Known RBP	0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	CEP295	Q9C0D2	2601 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	HECTD1	Q9ULT8	2610 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	CRYBG3	Q68DQ2	2970 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	TG	P01266	2768 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	ZFYVE26	Q68DK2	2539 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	PIEZO1	Q92508	2521 aa		0.56	□□□□□ -2.32
LEMD3-205	ENST00000544506	MKI67	P46013	3256 aa	Known RBP	0.55	□□□□□ -2.32
LEMD3-205	ENST00000544506	DMXL2	Q8TDJ6	3036 aa		0.55	□□□□□ -2.32
LEMD3-205	ENST00000544506	ACACB	O00763	2458 aa		0.55	□□□□□ -2.32
LEMD3-205	ENST00000544506	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.55	□□□□□ -2.32
LEMD3-205	ENST00000544506	USP24	Q9UPU5	2620 aa		0.54	□□□□□ -2.32

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