RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DSPP15924 2871 aaKnown RBP4.42□□□□□ -1.7
VPS13D-211ENST00000543710 CELSR3Q9NYQ7 3312 aa4.42□□□□□ -1.7
VPS13D-211ENST00000543710 TEX15Q9BXT5 2789 aa4.42□□□□□ -1.7
VPS13D-211ENST00000543710 PRO2289Q9P1D8 64 aa4.41□□□□□ -1.7
VPS13D-211ENST00000543710 A8MUU9 505 aa4.4□□□□□ -1.7
VPS13D-211ENST00000543710 CHD6Q8TD26 2715 aa4.4□□□□□ -1.71
VPS13D-211ENST00000543710 MAP1AP78559 2803 aaPredicted RBP4.38□□□□□ -1.71
VPS13D-211ENST00000543710 DMXL2Q8TDJ6 3036 aa4.37□□□□□ -1.71
VPS13D-211ENST00000543710 ATMQ13315 3056 aa4.37□□□□□ -1.71
VPS13D-211ENST00000543710 TPRXLQ17RH7 258 aa4.37□□□□□ -1.71
VPS13D-211ENST00000543710 ZFHX4Q86UP3 3567 aa4.36□□□□□ -1.71
VPS13D-211ENST00000543710 CFAP47Q6ZTR5 3102 aa4.35□□□□□ -1.71
VPS13D-211ENST00000543710 SPENQ96T58 3664 aaKnown RBP4.35□□□□□ -1.71
VPS13D-211ENST00000543710 COL6A3P12111 3177 aa4.35□□□□□ -1.71
VPS13D-211ENST00000543710 ZNF292O60281 2723 aa4.33□□□□□ -1.72
VPS13D-211ENST00000543710 KRTAP7-1Q8IUC3 87 aa4.33□□□□□ -1.72
VPS13D-211ENST00000543710 TENM4Q6N022 2769 aa4.33□□□□□ -1.72
VPS13D-211ENST00000543710 KRTAP10-10P60014 251 aa4.32□□□□□ -1.72
VPS13D-211ENST00000543710 KMT2BQ9UMN6 2715 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-211ENST00000543710 KRTAP13-2Q52LG2 175 aa4.3□□□□□ -1.72
VPS13D-211ENST00000543710 NSD1Q96L73 2696 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-211ENST00000543710 SMG1Q96Q15 3661 aaKnown RBP4.29□□□□□ -1.72
VPS13D-211ENST00000543710 TNP1P09430 55 aa4.29□□□□□ -1.72
VPS13D-211ENST00000543710 AKAP13Q12802 2813 aa4.29□□□□□ -1.72
VPS13D-211ENST00000543710 BOD1L1Q8NFC6 3051 aa4.29□□□□□ -1.72
VPS13D-211ENST00000543710 DCHS1Q96JQ0 3298 aa4.26□□□□□ -1.73
VPS13D-211ENST00000543710 KRTAP11-1Q8IUC1 163 aa4.25□□□□□ -1.73
VPS13D-211ENST00000543710 ASPMQ8IZT6 3477 aa4.25□□□□□ -1.73
VPS13D-211ENST00000543710 FLNCQ14315 2725 aa4.24□□□□□ -1.73
VPS13D-211ENST00000543710 ITPR2Q14571 2701 aa4.24□□□□□ -1.73
VPS13D-211ENST00000543710 A0A1B0GVY2 172 aa4.24□□□□□ -1.73
VPS13D-211ENST00000543710 ASH1LQ9NR48 2969 aaKnown RBP4.23□□□□□ -1.73
VPS13D-211ENST00000543710 TACC2O95359 2948 aa4.23□□□□□ -1.73
VPS13D-211ENST00000543710 LORP23490 312 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-211ENST00000543710 ZZEF1O43149 2961 aa4.23□□□□□ -1.73
VPS13D-211ENST00000543710 ADGRG4Q8IZF6 3080 aa4.22□□□□□ -1.73
VPS13D-211ENST00000543710 CENPEQ02224 2701 aa4.22□□□□□ -1.73
VPS13D-211ENST00000543710 C10orf95Q9H7T3 257 aa4.22□□□□□ -1.73
VPS13D-211ENST00000543710 MGAQ8IWI9 3026 aa4.21□□□□□ -1.74
VPS13D-211ENST00000543710 DMXL1Q9Y485 3027 aa4.2□□□□□ -1.74
VPS13D-211ENST00000543710 CSMD2Q7Z408 3487 aa4.19□□□□□ -1.74
VPS13D-211ENST00000543710 A8MU10 97 aa4.17□□□□□ -1.74
VPS13D-211ENST00000543710 KALRNO60229 2985 aa4.16□□□□□ -1.74
VPS13D-211ENST00000543710 RELNP78509 3460 aa4.15□□□□□ -1.74
VPS13D-211ENST00000543710 HIVEP1P15822 2718 aa4.14□□□□□ -1.75
VPS13D-211ENST00000543710 COL12A1Q99715 3063 aa4.14□□□□□ -1.75
VPS13D-211ENST00000543710 KRTAP10-8P60410 259 aa4.13□□□□□ -1.75
VPS13D-211ENST00000543710 XP32Q5T750 250 aa4.13□□□□□ -1.75
VPS13D-211ENST00000543710 KRTAP1-4P0C5Y4 121 aa4.13□□□□□ -1.75
VPS13D-211ENST00000543710 H0YAA0 97 aa4.11□□□□□ -1.75
VPS13D-211ENST00000543710 CSMD1Q96PZ7 3565 aa4.1□□□□□ -1.75
VPS13D-211ENST00000543710 HRNRQ86YZ3 2850 aaPredicted RBP4.1□□□□□ -1.75
VPS13D-211ENST00000543710 SVEP1Q4LDE5 3571 aa4.08□□□□□ -1.76
VPS13D-211ENST00000543710 UBR5O95071 2799 aaPredicted RBP4.07□□□□□ -1.76
VPS13D-211ENST00000543710 KRTAP13-3Q3SY46 172 aa4.07□□□□□ -1.76
VPS13D-211ENST00000543710 BSNQ9UPA5 3926 aa4.05□□□□□ -1.76
VPS13D-211ENST00000543710 LRBAP50851 2863 aa4.02□□□□□ -1.77
VPS13D-211ENST00000543710 LAMA5O15230 3695 aa4.02□□□□□ -1.77
VPS13D-211ENST00000543710 UTP20O75691 2785 aaKnown RBP3.97□□□□□ -1.77
VPS13D-211ENST00000543710 NF1P21359 2839 aa3.97□□□□□ -1.77
VPS13D-211ENST00000543710 ZANQ9Y493 2812 aa3.97□□□□□ -1.77
VPS13D-211ENST00000543710 KRTAP23-1A1A580 65 aa3.97□□□□□ -1.77
VPS13D-211ENST00000543710 DCHS2Q6V1P9 2916 aa3.96□□□□□ -1.78
VPS13D-211ENST00000543710 KRTAP13-4Q3LI77 160 aa3.95□□□□□ -1.78
VPS13D-211ENST00000543710 CUBNO60494 3623 aa3.94□□□□□ -1.78
VPS13D-211ENST00000543710 ITPR1Q14643 2758 aa3.93□□□□□ -1.78
VPS13D-211ENST00000543710 NIPBLQ6KC79 2804 aaeCLIP3.93□□□□□ -1.78
VPS13D-211ENST00000543710 CELSR1Q9NYQ6 3014 aa3.93□□□□□ -1.78
VPS13D-211ENST00000543710 TENM2Q9NT68 2774 aa3.93□□□□□ -1.78
VPS13D-211ENST00000543710 NBPF19A0A087WUL8 3843 aa3.91□□□□□ -1.78
VPS13D-211ENST00000543710 CELSR2Q9HCU4 2923 aa3.91□□□□□ -1.78
VPS13D-211ENST00000543710 ANK3Q12955 4377 aaKnown RBP3.89□□□□□ -1.79
VPS13D-211ENST00000543710 CRYBG3Q68DQ2 2970 aa3.88□□□□□ -1.79
VPS13D-211ENST00000543710 AKAP9Q99996 3911 aa3.87□□□□□ -1.79
VPS13D-211ENST00000543710 APCP25054 2843 aa3.86□□□□□ -1.79
VPS13D-211ENST00000543710 FBN2P35556 2912 aa3.85□□□□□ -1.79
VPS13D-211ENST00000543710 INE1O15225 51 aa3.85□□□□□ -1.79
VPS13D-211ENST00000543710 FBN3Q75N90 2809 aa3.83□□□□□ -1.8
VPS13D-211ENST00000543710 MXRA5Q9NR99 2828 aa3.83□□□□□ -1.8
VPS13D-211ENST00000543710 ALMS1Q8TCU4 4167 aa3.83□□□□□ -1.8
VPS13D-211ENST00000543710 TENM3Q9P273 2699 aa3.81□□□□□ -1.8
VPS13D-211ENST00000543710 PDZD2O15018 2839 aa3.81□□□□□ -1.8
VPS13D-211ENST00000543710 VPS13CQ709C8 3753 aa3.8□□□□□ -1.8
VPS13D-211ENST00000543710 HUWE1Q7Z6Z7 4374 aaKnown RBP3.8□□□□□ -1.8
VPS13D-211ENST00000543710 KRTAP12-2P59991 146 aa3.79□□□□□ -1.8
VPS13D-211ENST00000543710 KRTAP12-1P59990 96 aa3.78□□□□□ -1.8
VPS13D-211ENST00000543710 TENM1Q9UKZ4 2725 aa3.77□□□□□ -1.81
VPS13D-211ENST00000543710 NBEAL2Q6ZNJ1 2754 aa3.73□□□□□ -1.81
VPS13D-211ENST00000543710 KRTAP3-1Q9BYR8 98 aa3.68□□□□□ -1.82
VPS13D-211ENST00000543710 MT1HL1P0DM35 61 aa3.67□□□□□ -1.82
VPS13D-211ENST00000543710 VWFP04275 2813 aa3.66□□□□□ -1.82
VPS13D-211ENST00000543710 KRTAP4-5Q9BYR2 181 aa3.66□□□□□ -1.82
VPS13D-211ENST00000543710 KRTAP15-1Q3LI76 137 aa3.65□□□□□ -1.82
VPS13D-211ENST00000543710 KRTAP10-6P60371 365 aaPredicted RBP3.63□□□□□ -1.83
VPS13D-211ENST00000543710 CSMD3Q7Z407 3707 aa3.6□□□□□ -1.83
VPS13D-211ENST00000543710 OTOGQ6ZRI0 2925 aa3.59□□□□□ -1.83
VPS13D-211ENST00000543710 DNAH2Q9P225 4427 aa3.59□□□□□ -1.84
VPS13D-211ENST00000543710 PKD1L1Q8TDX9 2849 aa3.58□□□□□ -1.84
VPS13D-211ENST00000543710 KRTAP10-7P60409 375 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-211ENST00000543710 ZNF469Q96JG9 3925 aaPredicted RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms