RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 SSBP3-AS1Q7Z2R9 100 aa8.19□□□□□ -1.1
MSH2-206ENST00000543555 SVIPQ8NHG7 77 aa8.19□□□□□ -1.1
MSH2-206ENST00000543555 CD164Q04900 197 aa8.18□□□□□ -1.1
MSH2-206ENST00000543555 DYNC1H1Q14204 4646 aaKnown RBP8.18□□□□□ -1.1
MSH2-206ENST00000543555 FAM229BQ4G0N7 80 aa8.17□□□□□ -1.1
MSH2-206ENST00000543555 EPPK1P58107 5090 aaKnown RBP8.17□□□□□ -1.1
MSH2-206ENST00000543555 C1orf64Q8NEQ6 169 aa8.16□□□□□ -1.1
MSH2-206ENST00000543555 CYP4F30PQ9H0H9 118 aa8.16□□□□□ -1.1
MSH2-206ENST00000543555 TP53AIP1Q9HCN2 124 aa8.16□□□□□ -1.1
MSH2-206ENST00000543555 PRR4Q16378 134 aa8.14□□□□□ -1.11
MSH2-206ENST00000543555 SPINK6Q6UWN8 80 aa8.13□□□□□ -1.11
MSH2-206ENST00000543555 A0A087X002 238 aa8.13□□□□□ -1.11
MSH2-206ENST00000543555 NOTCH2NLQ7Z3S9 236 aa8.13□□□□□ -1.11
MSH2-206ENST00000543555 MRPL34Q9BQ48 92 aaKnown RBP8.13□□□□□ -1.11
MSH2-206ENST00000543555 KRTAP13-2Q52LG2 175 aa8.11□□□□□ -1.11
MSH2-206ENST00000543555 SPANXA2-OT1Q8N9U9 137 aa8.11□□□□□ -1.11
MSH2-206ENST00000543555 NDUFS5O43920 106 aa8.11□□□□□ -1.11
MSH2-206ENST00000543555 FAT1Q14517 4588 aa8.1□□□□□ -1.11
MSH2-206ENST00000543555 A0A1B0GVY2 172 aa8.1□□□□□ -1.11
MSH2-206ENST00000543555 SMR3BP02814 79 aaPredicted RBP8.1□□□□□ -1.11
MSH2-206ENST00000543555 LINC00336Q6ZUF6 198 aa8.09□□□□□ -1.11
MSH2-206ENST00000543555 KRTAP1-4P0C5Y4 121 aa8.06□□□□□ -1.12
MSH2-206ENST00000543555 MPLKIPQ8TAP9 179 aa8.06□□□□□ -1.12
MSH2-206ENST00000543555 VPS13BQ7Z7G8 4022 aa8.06□□□□□ -1.12
MSH2-206ENST00000543555 KIAA1109Q2LD37 5005 aa8.04□□□□□ -1.12
MSH2-206ENST00000543555 APOBP04114 4563 aaKnown RBP8.04□□□□□ -1.12
MSH2-206ENST00000543555 C8orf87E5RJ46 101 aa8.03□□□□□ -1.12
MSH2-206ENST00000543555 PCOTHQ58A44 107 aa8.02□□□□□ -1.13
MSH2-206ENST00000543555 C1orf195Q5TG92 126 aa8.01□□□□□ -1.13
MSH2-206ENST00000543555 IGLV7-46A0A075B6I9 117 aa8.01□□□□□ -1.13
MSH2-206ENST00000543555 PLA2G1BP04054 148 aaKnown RBP7.97□□□□□ -1.13
MSH2-206ENST00000543555 Q5W150 140 aa7.97□□□□□ -1.13
MSH2-206ENST00000543555 LIMD2Q9BT23 127 aa7.97□□□□□ -1.13
MSH2-206ENST00000543555 LINC00313P59037 77 aa7.97□□□□□ -1.13
MSH2-206ENST00000543555 Q1T7F1 81 aa7.97□□□□□ -1.13
MSH2-206ENST00000543555 KRTAP13-3Q3SY46 172 aa7.97□□□□□ -1.13
MSH2-206ENST00000543555 TYMSOSQ8TAI1 123 aa7.95□□□□□ -1.14
MSH2-206ENST00000543555 LOC101927531A0A1B0GV80 90 aa7.95□□□□□ -1.14
MSH2-206ENST00000543555 HSPG2P98160 4391 aa7.93□□□□□ -1.14
MSH2-206ENST00000543555 C4orf48Q5BLP8 95 aa7.92□□□□□ -1.14
MSH2-206ENST00000543555 Q8N9P0 234 aaPredicted RBP7.92□□□□□ -1.14
MSH2-206ENST00000543555 COA5Q86WW8 74 aa7.92□□□□□ -1.14
MSH2-206ENST00000543555 SPINK1P00995 79 aa7.9□□□□□ -1.14
MSH2-206ENST00000543555 KRTAP17-1Q9BYP8 105 aa7.9□□□□□ -1.14
MSH2-206ENST00000543555 FLG2Q5D862 2391 aaPredicted RBP7.89□□□□□ -1.15
MSH2-206ENST00000543555 KRTAP16-1A8MUX0 517 aa7.89□□□□□ -1.15
MSH2-206ENST00000543555 FAM229AH3BQW9 127 aa7.88□□□□□ -1.15
MSH2-206ENST00000543555 V9GYY9 64 aa7.88□□□□□ -1.15
MSH2-206ENST00000543555 RYR1P21817 5038 aa7.88□□□□□ -1.15
MSH2-206ENST00000543555 PRR26Q8N8Z3 221 aa7.87□□□□□ -1.15
MSH2-206ENST00000543555 PSPHP1O15172 72 aa7.85□□□□□ -1.15
MSH2-206ENST00000543555 PRO0628Q9UI54 55 aa7.85□□□□□ -1.15
MSH2-206ENST00000543555 LINC00304Q8N9R0 145 aa7.84□□□□□ -1.15
MSH2-206ENST00000543555 BRK1Q8WUW1 75 aa7.84□□□□□ -1.16
MSH2-206ENST00000543555 RETNLBQ9BQ08 111 aa7.83□□□□□ -1.16
MSH2-206ENST00000543555 HRES1P13985 223 aa7.82□□□□□ -1.16
MSH2-206ENST00000543555 RPS29P62273 56 aaKnown RBP7.82□□□□□ -1.16
MSH2-206ENST00000543555 LRP1Q07954 4544 aaKnown RBP7.81□□□□□ -1.16
MSH2-206ENST00000543555 A8MUN3 132 aa7.81□□□□□ -1.16
MSH2-206ENST00000543555 SPAG11AQ6PDA7 123 aa7.81□□□□□ -1.16
MSH2-206ENST00000543555 KRTAP10-4P60372 401 aaPredicted RBP7.8□□□□□ -1.16
MSH2-206ENST00000543555 MYCBP2O75592 4640 aa7.8□□□□□ -1.16
MSH2-206ENST00000543555 IGKV2-30P06310 120 aa7.8□□□□□ -1.16
MSH2-206ENST00000543555 Q5VSD8 79 aa7.77□□□□□ -1.17
MSH2-206ENST00000543555 Q5VV11 94 aa7.76□□□□□ -1.17
MSH2-206ENST00000543555 PRR15LQ9BU68 103 aa7.75□□□□□ -1.17
MSH2-206ENST00000543555 KRTAP4-5Q9BYR2 181 aa7.73□□□□□ -1.17
MSH2-206ENST00000543555 ACYP2P14621 99 aa7.73□□□□□ -1.17
MSH2-206ENST00000543555 DMAC1Q96GE9 116 aa7.73□□□□□ -1.17
MSH2-206ENST00000543555 IGKV2D-30A0A075B6S6 120 aa7.7□□□□□ -1.18
MSH2-206ENST00000543555 LINC01558Q9Y6Z2 57 aa7.7□□□□□ -1.18
MSH2-206ENST00000543555 PKHD1L1Q86WI1 4243 aa7.69□□□□□ -1.18
MSH2-206ENST00000543555 BIRC6Q9NR09 4857 aa7.69□□□□□ -1.18
MSH2-206ENST00000543555 CHKB-CPT1BH3BT56 60 aa7.68□□□□□ -1.18
MSH2-206ENST00000543555 Q75L30 129 aa7.68□□□□□ -1.18
MSH2-206ENST00000543555 ABCA13Q86UQ4 5058 aa7.66□□□□□ -1.18
MSH2-206ENST00000543555 DMBT1Q9UGM3 2413 aaPredicted RBP7.66□□□□□ -1.18
MSH2-206ENST00000543555 Q8N1X5 172 aa7.63□□□□□ -1.19
MSH2-206ENST00000543555 C9orf92A6NGG3 77 aa7.62□□□□□ -1.19
MSH2-206ENST00000543555 C7orf65Q6ZTY9 151 aa7.61□□□□□ -1.19
MSH2-206ENST00000543555 C20orf166-AS1Q96NR2 134 aa7.6□□□□□ -1.19
MSH2-206ENST00000543555 A8MUU9 505 aa7.59□□□□□ -1.19
MSH2-206ENST00000543555 HERC2O95714 4834 aa7.59□□□□□ -1.19
MSH2-206ENST00000543555 A6NED7 52 aa7.58□□□□□ -1.2
MSH2-206ENST00000543555 A8MU10 97 aa7.58□□□□□ -1.2
MSH2-206ENST00000543555 FAT3Q8TDW7 4589 aa7.55□□□□□ -1.2
MSH2-206ENST00000543555 PCLOQ9Y6V0 5065 aa7.54□□□□□ -1.2
MSH2-206ENST00000543555 LCA10Q71F78 164 aa7.54□□□□□ -1.2
MSH2-206ENST00000543555 TNXBP22105 4242 aa7.52□□□□□ -1.2
MSH2-206ENST00000543555 SPINK7P58062 85 aa7.51□□□□□ -1.21
MSH2-206ENST00000543555 KRTAP10-8P60410 259 aa7.5□□□□□ -1.21
MSH2-206ENST00000543555 CDC42SE1Q9NRR8 79 aa7.5□□□□□ -1.21
MSH2-206ENST00000543555 A0A1B0GU69 56 aa7.46□□□□□ -1.22
MSH2-206ENST00000543555 ATP11AUNQ6ZP68 121 aa7.44□□□□□ -1.22
MSH2-206ENST00000543555 SPTSSBQ8NFR3 76 aa7.43□□□□□ -1.22
MSH2-206ENST00000543555 MT1HL1P0DM35 61 aa7.41□□□□□ -1.22
MSH2-206ENST00000543555 PMAIP1Q13794 54 aa7.4□□□□□ -1.22
MSH2-206ENST00000543555 HERC1Q15751 4861 aa7.38□□□□□ -1.23
MSH2-206ENST00000543555 KRTAP3-1Q9BYR8 98 aa7.38□□□□□ -1.23
MSH2-206ENST00000543555 J3QL48 77 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms