RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 NDUFS5O43920 106 aa8.36□□□□□ -1.07
CLIP1-216ENST00000541410 FAM236DA0A1B0GTK5 79 aa8.36□□□□□ -1.07
CLIP1-216ENST00000541410 FAM236CP0DP71 79 aa8.36□□□□□ -1.07
CLIP1-216ENST00000541410 C5orf47Q569G3 176 aa8.36□□□□□ -1.07
CLIP1-216ENST00000541410 LINC00208Q96KT6 92 aa8.34□□□□□ -1.07
CLIP1-216ENST00000541410 KRTAP10-4P60372 401 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-216ENST00000541410 C1orf195Q5TG92 126 aa8.34□□□□□ -1.07
CLIP1-216ENST00000541410 H0Y9P7 68 aa8.33□□□□□ -1.08
CLIP1-216ENST00000541410 ASB16-AS1Q495Z4 193 aa8.32□□□□□ -1.08
CLIP1-216ENST00000541410 C4orf48Q5BLP8 95 aa8.32□□□□□ -1.08
CLIP1-216ENST00000541410 NDUFC1O43677 76 aa8.32□□□□□ -1.08
CLIP1-216ENST00000541410 OXTP01178 125 aa8.31□□□□□ -1.08
CLIP1-216ENST00000541410 MP68P56378 58 aa8.31□□□□□ -1.08
CLIP1-216ENST00000541410 ZCCHC13Q8WW36 166 aaKnown RBP8.31□□□□□ -1.08
CLIP1-216ENST00000541410 MRPL34Q9BQ48 92 aaKnown RBP8.3□□□□□ -1.08
CLIP1-216ENST00000541410 PRR4Q16378 134 aa8.28□□□□□ -1.08
CLIP1-216ENST00000541410 TRAV22A0A0B4J277 110 aa8.27□□□□□ -1.09
CLIP1-216ENST00000541410 LINC00304Q8N9R0 145 aa8.26□□□□□ -1.09
CLIP1-216ENST00000541410 LIMD2Q9BT23 127 aa8.26□□□□□ -1.09
CLIP1-216ENST00000541410 Q5XG85 94 aa8.25□□□□□ -1.09
CLIP1-216ENST00000541410 C1orf64Q8NEQ6 169 aa8.25□□□□□ -1.09
CLIP1-216ENST00000541410 SPINK1P00995 79 aa8.24□□□□□ -1.09
CLIP1-216ENST00000541410 LINC00313P59037 77 aa8.24□□□□□ -1.09
CLIP1-216ENST00000541410 SVIPQ8NHG7 77 aa8.22□□□□□ -1.09
CLIP1-216ENST00000541410 RETNLBQ9BQ08 111 aa8.22□□□□□ -1.09
CLIP1-216ENST00000541410 TP53AIP1Q9HCN2 124 aa8.22□□□□□ -1.09
CLIP1-216ENST00000541410 RPS28P62857 69 aaKnown RBP8.21□□□□□ -1.09
CLIP1-216ENST00000541410 Q5W150 140 aa8.21□□□□□ -1.1
CLIP1-216ENST00000541410 PCOTHQ58A44 107 aa8.2□□□□□ -1.1
CLIP1-216ENST00000541410 HSPG2P98160 4391 aa8.19□□□□□ -1.1
CLIP1-216ENST00000541410 C8orf87E5RJ46 101 aa8.19□□□□□ -1.1
CLIP1-216ENST00000541410 KRTAP17-1Q9BYP8 105 aa8.18□□□□□ -1.1
CLIP1-216ENST00000541410 SERP1Q9Y6X1 66 aa8.18□□□□□ -1.1
CLIP1-216ENST00000541410 FAM229AH3BQW9 127 aa8.18□□□□□ -1.1
CLIP1-216ENST00000541410 Q5VSD8 79 aa8.18□□□□□ -1.1
CLIP1-216ENST00000541410 FLG2Q5D862 2391 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-216ENST00000541410 LRP1Q07954 4544 aaKnown RBP8.16□□□□□ -1.1
CLIP1-216ENST00000541410 PKHD1L1Q86WI1 4243 aa8.16□□□□□ -1.1
CLIP1-216ENST00000541410 H3BPC8 53 aa8.15□□□□□ -1.1
CLIP1-216ENST00000541410 ATP5EP56381 51 aaPredicted RBP8.15□□□□□ -1.1
CLIP1-216ENST00000541410 KRTAP16-1A8MUX0 517 aa8.14□□□□□ -1.11
CLIP1-216ENST00000541410 SPAG11AQ6PDA7 123 aa8.13□□□□□ -1.11
CLIP1-216ENST00000541410 KIAA1109Q2LD37 5005 aa8.12□□□□□ -1.11
CLIP1-216ENST00000541410 Q8N9P0 234 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-216ENST00000541410 RYR1P21817 5038 aa8.1□□□□□ -1.11
CLIP1-216ENST00000541410 KRTAP13-3Q3SY46 172 aa8.1□□□□□ -1.11
CLIP1-216ENST00000541410 EPPK1P58107 5090 aaKnown RBP8.09□□□□□ -1.11
CLIP1-216ENST00000541410 C9orf92A6NGG3 77 aa8.08□□□□□ -1.12
CLIP1-216ENST00000541410 RPS29P62273 56 aaKnown RBP8.08□□□□□ -1.12
CLIP1-216ENST00000541410 Q8N1X5 172 aa8.07□□□□□ -1.12
CLIP1-216ENST00000541410 DMBT1Q9UGM3 2413 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-216ENST00000541410 FP248Q71RG6 208 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-216ENST00000541410 CYP4F30PQ9H0H9 118 aa8.04□□□□□ -1.12
CLIP1-216ENST00000541410 C4orf26Q17RF5 130 aa8.03□□□□□ -1.12
CLIP1-216ENST00000541410 SPANXA2-OT1Q8N9U9 137 aa8.03□□□□□ -1.12
CLIP1-216ENST00000541410 LOC101927531A0A1B0GV80 90 aa8.02□□□□□ -1.13
CLIP1-216ENST00000541410 MPLKIPQ8TAP9 179 aa8.02□□□□□ -1.13
CLIP1-216ENST00000541410 TNXBP22105 4242 aa8.01□□□□□ -1.13
CLIP1-216ENST00000541410 IGLV7-46A0A075B6I9 117 aa8□□□□□ -1.13
CLIP1-216ENST00000541410 SMIM26A0A096LP01 95 aa8□□□□□ -1.13
CLIP1-216ENST00000541410 MYCBP2O75592 4640 aa8□□□□□ -1.13
CLIP1-216ENST00000541410 IGKV2D-30A0A075B6S6 120 aa7.98□□□□□ -1.13
CLIP1-216ENST00000541410 IGKV2-30P06310 120 aa7.98□□□□□ -1.13
CLIP1-216ENST00000541410 KRTAP10-8P60410 259 aa7.98□□□□□ -1.13
CLIP1-216ENST00000541410 HRES1P13985 223 aa7.93□□□□□ -1.14
CLIP1-216ENST00000541410 COA5Q86WW8 74 aa7.92□□□□□ -1.14
CLIP1-216ENST00000541410 FAT3Q8TDW7 4589 aa7.92□□□□□ -1.14
CLIP1-216ENST00000541410 KRTAP4-5Q9BYR2 181 aa7.89□□□□□ -1.15
CLIP1-216ENST00000541410 MT1HL1P0DM35 61 aa7.87□□□□□ -1.15
CLIP1-216ENST00000541410 C20orf166-AS1Q96NR2 134 aa7.86□□□□□ -1.15
CLIP1-216ENST00000541410 A8MUU9 505 aa7.85□□□□□ -1.15
CLIP1-216ENST00000541410 PSPHP1O15172 72 aa7.82□□□□□ -1.16
CLIP1-216ENST00000541410 C7orf65Q6ZTY9 151 aa7.81□□□□□ -1.16
CLIP1-216ENST00000541410 DMAC1Q96GE9 116 aa7.78□□□□□ -1.16
CLIP1-216ENST00000541410 Q1T7F1 81 aa7.78□□□□□ -1.16
CLIP1-216ENST00000541410 ACYP2P14621 99 aa7.77□□□□□ -1.17
CLIP1-216ENST00000541410 A8MUN3 132 aa7.75□□□□□ -1.17
CLIP1-216ENST00000541410 Q75L30 129 aa7.74□□□□□ -1.17
CLIP1-216ENST00000541410 SPINK7P58062 85 aa7.73□□□□□ -1.17
CLIP1-216ENST00000541410 CHKB-CPT1BH3BT56 60 aa7.73□□□□□ -1.17
CLIP1-216ENST00000541410 XP32Q5T750 250 aa7.71□□□□□ -1.18
CLIP1-216ENST00000541410 ABCA13Q86UQ4 5058 aa7.7□□□□□ -1.18
CLIP1-216ENST00000541410 PRR15LQ9BU68 103 aa7.69□□□□□ -1.18
CLIP1-216ENST00000541410 ATP11AUNQ6ZP68 121 aa7.68□□□□□ -1.18
CLIP1-216ENST00000541410 V9GYY9 64 aa7.66□□□□□ -1.18
CLIP1-216ENST00000541410 RPL37P61927 97 aaKnown RBP7.65□□□□□ -1.18
CLIP1-216ENST00000541410 Q5VV11 94 aa7.65□□□□□ -1.18
CLIP1-216ENST00000541410 BRK1Q8WUW1 75 aa7.65□□□□□ -1.18
CLIP1-216ENST00000541410 LPAP08519 4548 aa7.63□□□□□ -1.19
CLIP1-216ENST00000541410 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
CLIP1-216ENST00000541410 LINC01558Q9Y6Z2 57 aa7.6□□□□□ -1.19
CLIP1-216ENST00000541410 LRP2P98164 4655 aa7.6□□□□□ -1.19
CLIP1-216ENST00000541410 HERC2O95714 4834 aa7.57□□□□□ -1.2
CLIP1-216ENST00000541410 A8MU10 97 aa7.56□□□□□ -1.2
CLIP1-216ENST00000541410 J3QL48 77 aa7.54□□□□□ -1.2
CLIP1-216ENST00000541410 BIRC6Q9NR09 4857 aa7.53□□□□□ -1.2
CLIP1-216ENST00000541410 TPRXLQ17RH7 258 aa7.52□□□□□ -1.21
CLIP1-216ENST00000541410 COX6B2Q6YFQ2 88 aa7.51□□□□□ -1.21
CLIP1-216ENST00000541410 A6NED7 52 aa7.5□□□□□ -1.21
CLIP1-216ENST00000541410 A0A1B0GU69 56 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms