RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 KRTAP10-8P60410 259 aa7.22□□□□□ -1.25
SMAD3-204ENST00000540846 KRTAP29-1A8MX34 341 aaPredicted RBP7.2□□□□□ -1.26
SMAD3-204ENST00000540846 NDUFB1O75438 58 aa7.2□□□□□ -1.26
SMAD3-204ENST00000540846 Q5XG85 94 aa7.2□□□□□ -1.26
SMAD3-204ENST00000540846 TNXBP22105 4242 aa7.2□□□□□ -1.26
SMAD3-204ENST00000540846 SVIPQ8NHG7 77 aa7.19□□□□□ -1.26
SMAD3-204ENST00000540846 TYMSOSQ8TAI1 123 aa7.19□□□□□ -1.26
SMAD3-204ENST00000540846 PCLOQ9Y6V0 5065 aa7.19□□□□□ -1.26
SMAD3-204ENST00000540846 MMP24-AS1A0A0U1RRL7 71 aa7.18□□□□□ -1.26
SMAD3-204ENST00000540846 OXTP01178 125 aa7.18□□□□□ -1.26
SMAD3-204ENST00000540846 WFDC13Q8IUB5 93 aa7.18□□□□□ -1.26
SMAD3-204ENST00000540846 TMEM258P61165 79 aa7.17□□□□□ -1.26
SMAD3-204ENST00000540846 A0A1B0GVX0 72 aa7.16□□□□□ -1.26
SMAD3-204ENST00000540846 CASC2Q6XLA1 102 aa7.16□□□□□ -1.26
SMAD3-204ENST00000540846 C20orf197Q8N268 126 aa7.16□□□□□ -1.26
SMAD3-204ENST00000540846 LIMD2Q9BT23 127 aa7.15□□□□□ -1.27
SMAD3-204ENST00000540846 CYSTM1Q9H1C7 97 aa7.15□□□□□ -1.27
SMAD3-204ENST00000540846 KLKP1Q107X0 134 aa7.14□□□□□ -1.27
SMAD3-204ENST00000540846 C8orf17Q9NRJ1 99 aa7.14□□□□□ -1.27
SMAD3-204ENST00000540846 SPINK1P00995 79 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 IGHV6-1A0A0B4J1U7 121 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 hDV103S1A0JD37 113 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 RPS28P62857 69 aaKnown RBP7.12□□□□□ -1.27
SMAD3-204ENST00000540846 C4orf48Q5BLP8 95 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 C1orf195Q5TG92 126 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 LINC00304Q8N9R0 145 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 TMEM254Q8TBM7 123 aa7.12□□□□□ -1.27
SMAD3-204ENST00000540846 RPS29P62273 56 aaKnown RBP7.11□□□□□ -1.27
SMAD3-204ENST00000540846 DMBT1Q9UGM3 2413 aaPredicted RBP7.1□□□□□ -1.27
SMAD3-204ENST00000540846 SPAG11AQ6PDA7 123 aa7.09□□□□□ -1.27
SMAD3-204ENST00000540846 A0A0U1RQV1 116 aa7.08□□□□□ -1.28
SMAD3-204ENST00000540846 SNURFQ9Y675 71 aa7.08□□□□□ -1.28
SMAD3-204ENST00000540846 C8orf87E5RJ46 101 aa7.07□□□□□ -1.28
SMAD3-204ENST00000540846 C5orf47Q569G3 176 aa7.07□□□□□ -1.28
SMAD3-204ENST00000540846 NOTCH2NLQ7Z3S9 236 aa7.07□□□□□ -1.28
SMAD3-204ENST00000540846 H7BZZ5 65 aa7.05□□□□□ -1.28
SMAD3-204ENST00000540846 MRPL34Q9BQ48 92 aaKnown RBP7.05□□□□□ -1.28
SMAD3-204ENST00000540846 NDUFC1O43677 76 aa7.04□□□□□ -1.28
SMAD3-204ENST00000540846 ZCCHC13Q8WW36 166 aaKnown RBP7.03□□□□□ -1.28
SMAD3-204ENST00000540846 TP53AIP1Q9HCN2 124 aa7.03□□□□□ -1.28
SMAD3-204ENST00000540846 J3QL48 77 aa7.01□□□□□ -1.29
SMAD3-204ENST00000540846 MP68P56378 58 aa7.01□□□□□ -1.29
SMAD3-204ENST00000540846 ATP5EP56381 51 aaPredicted RBP7.01□□□□□ -1.29
SMAD3-204ENST00000540846 TRAV22A0A0B4J277 110 aa6.99□□□□□ -1.29
SMAD3-204ENST00000540846 H0Y9P7 68 aa6.99□□□□□ -1.29
SMAD3-204ENST00000540846 H3BPC8 53 aa6.99□□□□□ -1.29
SMAD3-204ENST00000540846 LINC00313P59037 77 aa6.99□□□□□ -1.29
SMAD3-204ENST00000540846 FAM236DA0A1B0GTK5 79 aa6.97□□□□□ -1.29
SMAD3-204ENST00000540846 NDUFS5O43920 106 aa6.97□□□□□ -1.29
SMAD3-204ENST00000540846 FAM236CP0DP71 79 aa6.97□□□□□ -1.29
SMAD3-204ENST00000540846 KRTAP16-1A8MUX0 517 aa6.96□□□□□ -1.29
SMAD3-204ENST00000540846 LINC00208Q96KT6 92 aa6.95□□□□□ -1.3
SMAD3-204ENST00000540846 RETNLBQ9BQ08 111 aa6.95□□□□□ -1.3
SMAD3-204ENST00000540846 Q8N9P0 234 aaPredicted RBP6.94□□□□□ -1.3
SMAD3-204ENST00000540846 SERP1Q9Y6X1 66 aa6.93□□□□□ -1.3
SMAD3-204ENST00000540846 HERC1Q15751 4861 aa6.93□□□□□ -1.3
SMAD3-204ENST00000540846 KRTAP13-3Q3SY46 172 aa6.92□□□□□ -1.3
SMAD3-204ENST00000540846 C1orf64Q8NEQ6 169 aa6.92□□□□□ -1.3
SMAD3-204ENST00000540846 Q5W150 140 aa6.89□□□□□ -1.31
SMAD3-204ENST00000540846 FP248Q71RG6 208 aaPredicted RBP6.87□□□□□ -1.31
SMAD3-204ENST00000540846 LOC101927531A0A1B0GV80 90 aa6.85□□□□□ -1.31
SMAD3-204ENST00000540846 SPANXA2-OT1Q8N9U9 137 aa6.83□□□□□ -1.32
SMAD3-204ENST00000540846 IGLV7-46A0A075B6I9 117 aa6.82□□□□□ -1.32
SMAD3-204ENST00000540846 SMIM26A0A096LP01 95 aa6.82□□□□□ -1.32
SMAD3-204ENST00000540846 PRR4Q16378 134 aa6.82□□□□□ -1.32
SMAD3-204ENST00000540846 CYP4F30PQ9H0H9 118 aa6.82□□□□□ -1.32
SMAD3-204ENST00000540846 HMCN2Q8NDA2 5059 aa6.8□□□□□ -1.32
SMAD3-204ENST00000540846 C9orf92A6NGG3 77 aa6.79□□□□□ -1.32
SMAD3-204ENST00000540846 A8MUU9 505 aa6.78□□□□□ -1.32
SMAD3-204ENST00000540846 TPRXLQ17RH7 258 aa6.78□□□□□ -1.32
SMAD3-204ENST00000540846 PCOTHQ58A44 107 aa6.78□□□□□ -1.32
SMAD3-204ENST00000540846 C20orf166-AS1Q96NR2 134 aa6.78□□□□□ -1.32
SMAD3-204ENST00000540846 IGKV2-30P06310 120 aa6.78□□□□□ -1.32
SMAD3-204ENST00000540846 LPAP08519 4548 aa6.76□□□□□ -1.33
SMAD3-204ENST00000540846 LRP2P98164 4655 aa6.71□□□□□ -1.34
SMAD3-204ENST00000540846 XP32Q5T750 250 aa6.7□□□□□ -1.34
SMAD3-204ENST00000540846 Q75L30 129 aa6.7□□□□□ -1.34
SMAD3-204ENST00000540846 IGKV2D-30A0A075B6S6 120 aa6.69□□□□□ -1.34
SMAD3-204ENST00000540846 C4orf26Q17RF5 130 aa6.69□□□□□ -1.34
SMAD3-204ENST00000540846 HRES1P13985 223 aa6.68□□□□□ -1.34
SMAD3-204ENST00000540846 C7orf65Q6ZTY9 151 aa6.67□□□□□ -1.34
SMAD3-204ENST00000540846 PRO0628Q9UI54 55 aa6.64□□□□□ -1.35
SMAD3-204ENST00000540846 V9GYY9 64 aa6.63□□□□□ -1.35
SMAD3-204ENST00000540846 COA5Q86WW8 74 aa6.62□□□□□ -1.35
SMAD3-204ENST00000540846 DMAC1Q96GE9 116 aa6.62□□□□□ -1.35
SMAD3-204ENST00000540846 RPL37P61927 97 aaKnown RBP6.61□□□□□ -1.35
SMAD3-204ENST00000540846 ACYP2P14621 99 aa6.57□□□□□ -1.36
SMAD3-204ENST00000540846 ATP11AUNQ6ZP68 121 aa6.57□□□□□ -1.36
SMAD3-204ENST00000540846 SPINK7P58062 85 aa6.56□□□□□ -1.36
SMAD3-204ENST00000540846 Q1T7F1 81 aa6.56□□□□□ -1.36
SMAD3-204ENST00000540846 MPLKIPQ8TAP9 179 aa6.53□□□□□ -1.36
SMAD3-204ENST00000540846 UBR4Q5T4S7 5183 aa6.52□□□□□ -1.37
SMAD3-204ENST00000540846 MUC17Q685J3 4493 aa6.52□□□□□ -1.37
SMAD3-204ENST00000540846 A8MUN3 132 aa6.51□□□□□ -1.37
SMAD3-204ENST00000540846 BRK1Q8WUW1 75 aa6.51□□□□□ -1.37
SMAD3-204ENST00000540846 SEC61BP60468 96 aaKnown RBP6.5□□□□□ -1.37
SMAD3-204ENST00000540846 KRTAP4-1Q9BYQ7 146 aa6.48□□□□□ -1.37
SMAD3-204ENST00000540846 CHKB-CPT1BH3BT56 60 aa6.45□□□□□ -1.38
SMAD3-204ENST00000540846 COX6B2Q6YFQ2 88 aa6.43□□□□□ -1.38
SMAD3-204ENST00000540846 KRTAP3-1Q9BYR8 98 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms