RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZNF861PO60384 105 aa11.49□□□□□ -0.57
VPS28-213ENST00000530983 LOC101927531A0A1B0GV80 90 aa11.48□□□□□ -0.57
VPS28-213ENST00000530983 LCA10Q71F78 164 aa11.48□□□□□ -0.57
VPS28-213ENST00000530983 Q75L30 129 aa11.48□□□□□ -0.57
VPS28-213ENST00000530983 Q6ZR54 194 aa11.47□□□□□ -0.57
VPS28-213ENST00000530983 PCOTHQ58A44 107 aa11.44□□□□□ -0.58
VPS28-213ENST00000530983 SPTSSBQ8NFR3 76 aa11.44□□□□□ -0.58
VPS28-213ENST00000530983 CD164Q04900 197 aa11.43□□□□□ -0.58
VPS28-213ENST00000530983 A0A087X002 238 aa11.43□□□□□ -0.58
VPS28-213ENST00000530983 NOTCH2NLQ7Z3S9 236 aa11.43□□□□□ -0.58
VPS28-213ENST00000530983 A6NED7 52 aa11.42□□□□□ -0.58
VPS28-213ENST00000530983 NDUFS5O43920 106 aa11.42□□□□□ -0.58
VPS28-213ENST00000530983 CDK2AP2O75956 126 aa11.42□□□□□ -0.58
VPS28-213ENST00000530983 MRPL34Q9BQ48 92 aaKnown RBP11.41□□□□□ -0.58
VPS28-213ENST00000530983 MEGF8Q7Z7M0 2845 aa11.39□□□□□ -0.59
VPS28-213ENST00000530983 ATP11AUNQ6ZP68 121 aa11.39□□□□□ -0.59
VPS28-213ENST00000530983 TGP01266 2768 aa11.39□□□□□ -0.59
VPS28-213ENST00000530983 KTN1-AS1Q86SY8 53 aa11.38□□□□□ -0.59
VPS28-213ENST00000530983 IGLV7-43P04211 117 aa11.35□□□□□ -0.59
VPS28-213ENST00000530983 SPAG11AQ6PDA7 123 aa11.35□□□□□ -0.59
VPS28-213ENST00000530983 LINC01558Q9Y6Z2 57 aa11.34□□□□□ -0.59
VPS28-213ENST00000530983 C1orf134Q5TEV5 83 aa11.33□□□□□ -0.6
VPS28-213ENST00000530983 ALMS1Q8TCU4 4167 aa11.33□□□□□ -0.6
VPS28-213ENST00000530983 A6NN06 94 aa11.32□□□□□ -0.6
VPS28-213ENST00000530983 CDC42SE1Q9NRR8 79 aa11.32□□□□□ -0.6
VPS28-213ENST00000530983 SPINK6Q6UWN8 80 aa11.32□□□□□ -0.6
VPS28-213ENST00000530983 DNAH6Q9C0G6 4158 aa11.3□□□□□ -0.6
VPS28-213ENST00000530983 CIRBP-AS1Q8TBR5 109 aa11.29□□□□□ -0.6
VPS28-213ENST00000530983 HRES1P13985 223 aa11.27□□□□□ -0.61
VPS28-213ENST00000530983 RBM12B-AS1Q9P1G2 102 aa11.26□□□□□ -0.61
VPS28-213ENST00000530983 DNAH11Q96DT5 4516 aa11.26□□□□□ -0.61
VPS28-213ENST00000530983 Q5W150 140 aa11.26□□□□□ -0.61
VPS28-213ENST00000530983 KRTAP13-3Q3SY46 172 aa11.25□□□□□ -0.61
VPS28-213ENST00000530983 DNAH5Q8TE73 4624 aa11.24□□□□□ -0.61
VPS28-213ENST00000530983 SPINK7P58062 85 aa11.23□□□□□ -0.61
VPS28-213ENST00000530983 LY6G6CO95867 125 aa11.21□□□□□ -0.61
VPS28-213ENST00000530983 SSBP3-AS1Q7Z2R9 100 aa11.21□□□□□ -0.62
VPS28-213ENST00000530983 KRTAP10-2P60368 255 aa11.18□□□□□ -0.62
VPS28-213ENST00000530983 C8orf87E5RJ46 101 aa11.15□□□□□ -0.62
VPS28-213ENST00000530983 DNHD1Q96M86 4753 aa11.14□□□□□ -0.63
VPS28-213ENST00000530983 C7orf65Q6ZTY9 151 aa11.13□□□□□ -0.63
VPS28-213ENST00000530983 KRTAP13-2Q52LG2 175 aa11.11□□□□□ -0.63
VPS28-213ENST00000530983 PRR26Q8N8Z3 221 aa11.11□□□□□ -0.63
VPS28-213ENST00000530983 LINC00313P59037 77 aa11.08□□□□□ -0.64
VPS28-213ENST00000530983 LRP1BQ9NZR2 4599 aa11.08□□□□□ -0.64
VPS28-213ENST00000530983 PKD1P98161 4303 aa11.07□□□□□ -0.64
VPS28-213ENST00000530983 Q6ZSA8 131 aa11.05□□□□□ -0.64
VPS28-213ENST00000530983 KRTAP10-1P60331 282 aa11.03□□□□□ -0.64
VPS28-213ENST00000530983 FAM229AH3BQW9 127 aa11.02□□□□□ -0.65
VPS28-213ENST00000530983 HYDINQ4G0P3 5121 aa11.01□□□□□ -0.65
VPS28-213ENST00000530983 ACYP2P14621 99 aa11□□□□□ -0.65
VPS28-213ENST00000530983 RETNLBQ9BQ08 111 aa11□□□□□ -0.65
VPS28-213ENST00000530983 FAT2Q9NYQ8 4349 aa11□□□□□ -0.65
VPS28-213ENST00000530983 DMAC1Q96GE9 116 aa10.98□□□□□ -0.65
VPS28-213ENST00000530983 KRTAP16-1A8MUX0 517 aa10.98□□□□□ -0.65
VPS28-213ENST00000530983 KRTAP1-4P0C5Y4 121 aa10.98□□□□□ -0.65
VPS28-213ENST00000530983 VPS13BQ7Z7G8 4022 aa10.96□□□□□ -0.65
VPS28-213ENST00000530983 IGKV2-30P06310 120 aa10.96□□□□□ -0.66
VPS28-213ENST00000530983 PRAC1Q96KF2 57 aa10.87□□□□□ -0.67
VPS28-213ENST00000530983 ADM2Q7Z4H4 148 aa10.83□□□□□ -0.68
VPS28-213ENST00000530983 PLA2G1BP04054 148 aaKnown RBP10.83□□□□□ -0.68
VPS28-213ENST00000530983 A0A1B0GU69 56 aa10.82□□□□□ -0.68
VPS28-213ENST00000530983 KRTAP21-3Q3LHN1 58 aa10.81□□□□□ -0.68
VPS28-213ENST00000530983 IGKV2D-30A0A075B6S6 120 aa10.8□□□□□ -0.68
VPS28-213ENST00000530983 TYMSOSQ8TAI1 123 aa10.8□□□□□ -0.68
VPS28-213ENST00000530983 C4orf48Q5BLP8 95 aa10.79□□□□□ -0.68
VPS28-213ENST00000530983 SPATA8Q6RVD6 105 aa10.78□□□□□ -0.68
VPS28-213ENST00000530983 SPINK1P00995 79 aa10.76□□□□□ -0.69
VPS28-213ENST00000530983 PKHD1P08F94 4074 aa10.74□□□□□ -0.69
VPS28-213ENST00000530983 MIR22HGQ0VDD5 57 aa10.7□□□□□ -0.7
VPS28-213ENST00000530983 UQCR11O14957 56 aa10.67□□□□□ -0.7
VPS28-213ENST00000530983 LINC00304Q8N9R0 145 aa10.64□□□□□ -0.71
VPS28-213ENST00000530983 RPS29P62273 56 aaKnown RBP10.62□□□□□ -0.71
VPS28-213ENST00000530983 SACSQ9NZJ4 4579 aa10.62□□□□□ -0.71
VPS28-213ENST00000530983 LINC01554Q52M75 96 aa10.61□□□□□ -0.71
VPS28-213ENST00000530983 Q8N1X5 172 aa10.56□□□□□ -0.72
VPS28-213ENST00000530983 DYNC1H1Q14204 4646 aaKnown RBP10.54□□□□□ -0.72
VPS28-213ENST00000530983 SMR3BP02814 79 aaPredicted RBP10.53□□□□□ -0.72
VPS28-213ENST00000530983 PKHD1L1Q86WI1 4243 aa10.49□□□□□ -0.73
VPS28-213ENST00000530983 CSAG1Q6PB30 78 aa10.48□□□□□ -0.73
VPS28-213ENST00000530983 FAT1Q14517 4588 aa10.47□□□□□ -0.73
VPS28-213ENST00000530983 C9orf92A6NGG3 77 aa10.47□□□□□ -0.73
VPS28-213ENST00000530983 APOBP04114 4563 aaKnown RBP10.46□□□□□ -0.74
VPS28-213ENST00000530983 C20orf166-AS1Q96NR2 134 aa10.45□□□□□ -0.74
VPS28-213ENST00000530983 A8MUU9 505 aa10.45□□□□□ -0.74
VPS28-213ENST00000530983 A0A1B0GVY2 172 aa10.44□□□□□ -0.74
VPS28-213ENST00000530983 KRTAP10-4P60372 401 aaPredicted RBP10.43□□□□□ -0.74
VPS28-213ENST00000530983 KRTAP3-1Q9BYR8 98 aa10.36□□□□□ -0.75
VPS28-213ENST00000530983 H0YAA0 97 aa10.28□□□□□ -0.76
VPS28-213ENST00000530983 FLG2Q5D862 2391 aaPredicted RBP10.22□□□□□ -0.77
VPS28-213ENST00000530983 RYR2Q92736 4967 aa10.21□□□□□ -0.77
VPS28-213ENST00000530983 H3BS24 57 aa10.19□□□□□ -0.78
VPS28-213ENST00000530983 A0A1B0GU33 70 aa10.14□□□□□ -0.79
VPS28-213ENST00000530983 COX6B2Q6YFQ2 88 aa10.13□□□□□ -0.79
VPS28-213ENST00000530983 FAT3Q8TDW7 4589 aa10.13□□□□□ -0.79
VPS28-213ENST00000530983 KRTAP25-1Q3LHN0 102 aa10.13□□□□□ -0.79
VPS28-213ENST00000530983 H1FX-AS1Q4G0G2 97 aa10.11□□□□□ -0.79
VPS28-213ENST00000530983 KMT2CQ8NEZ4 4911 aaKnown RBP10.1□□□□□ -0.79
VPS28-213ENST00000530983 TNXBP22105 4242 aa10.1□□□□□ -0.79
VPS28-213ENST00000530983 LRP1Q07954 4544 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 427.2 ms