RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PRR26Q8N8Z3 221 aa11.93□□□□□ -0.5
VPS28-209ENST00000528142 IGHV6-1A0A0B4J1U7 121 aa11.92□□□□□ -0.5
VPS28-209ENST00000528142 hDV103S1A0JD37 113 aa11.91□□□□□ -0.5
VPS28-209ENST00000528142 SNURFQ9Y675 71 aa11.91□□□□□ -0.5
VPS28-209ENST00000528142 A0A0U1RQV1 116 aa11.89□□□□□ -0.51
VPS28-209ENST00000528142 C1orf195Q5TG92 126 aa11.88□□□□□ -0.51
VPS28-209ENST00000528142 NOTCH2NLQ7Z3S9 236 aa11.87□□□□□ -0.51
VPS28-209ENST00000528142 LIMD2Q9BT23 127 aa11.87□□□□□ -0.51
VPS28-209ENST00000528142 C4orf48Q5BLP8 95 aa11.86□□□□□ -0.51
VPS28-209ENST00000528142 SPINK1P00995 79 aa11.86□□□□□ -0.51
VPS28-209ENST00000528142 C5orf47Q569G3 176 aa11.86□□□□□ -0.51
VPS28-209ENST00000528142 H7BZZ5 65 aa11.85□□□□□ -0.51
VPS28-209ENST00000528142 TMEM258P61165 79 aa11.83□□□□□ -0.51
VPS28-209ENST00000528142 LINC00304Q8N9R0 145 aa11.81□□□□□ -0.52
VPS28-209ENST00000528142 FAM229AH3BQW9 127 aa11.81□□□□□ -0.52
VPS28-209ENST00000528142 PKHD1L1Q86WI1 4243 aa11.8□□□□□ -0.52
VPS28-209ENST00000528142 Q5VSD8 79 aa11.8□□□□□ -0.52
VPS28-209ENST00000528142 NDUFC1O43677 76 aa11.79□□□□□ -0.52
VPS28-209ENST00000528142 RPS29P62273 56 aaKnown RBP11.79□□□□□ -0.52
VPS28-209ENST00000528142 SPAG11AQ6PDA7 123 aa11.79□□□□□ -0.52
VPS28-209ENST00000528142 ZCCHC13Q8WW36 166 aaKnown RBP11.79□□□□□ -0.52
VPS28-209ENST00000528142 MRPL34Q9BQ48 92 aaKnown RBP11.79□□□□□ -0.52
VPS28-209ENST00000528142 C8orf87E5RJ46 101 aa11.76□□□□□ -0.53
VPS28-209ENST00000528142 TP53AIP1Q9HCN2 124 aa11.74□□□□□ -0.53
VPS28-209ENST00000528142 MP68P56378 58 aa11.72□□□□□ -0.53
VPS28-209ENST00000528142 Q8N1X5 172 aa11.72□□□□□ -0.53
VPS28-209ENST00000528142 H0Y9P7 68 aa11.71□□□□□ -0.54
VPS28-209ENST00000528142 LINC00313P59037 77 aa11.7□□□□□ -0.54
VPS28-209ENST00000528142 TRAV22A0A0B4J277 110 aa11.68□□□□□ -0.54
VPS28-209ENST00000528142 H3BPC8 53 aa11.68□□□□□ -0.54
VPS28-209ENST00000528142 NDUFS5O43920 106 aa11.67□□□□□ -0.54
VPS28-209ENST00000528142 FAM236DA0A1B0GTK5 79 aa11.67□□□□□ -0.54
VPS28-209ENST00000528142 FAM236CP0DP71 79 aa11.67□□□□□ -0.54
VPS28-209ENST00000528142 LINC00208Q96KT6 92 aa11.67□□□□□ -0.54
VPS28-209ENST00000528142 BIRC6Q9NR09 4857 aa11.66□□□□□ -0.54
VPS28-209ENST00000528142 KRTAP4-5Q9BYR2 181 aa11.65□□□□□ -0.55
VPS28-209ENST00000528142 KRTAP16-1A8MUX0 517 aa11.63□□□□□ -0.55
VPS28-209ENST00000528142 LRP1Q07954 4544 aaKnown RBP11.61□□□□□ -0.55
VPS28-209ENST00000528142 Q8N9P0 234 aaPredicted RBP11.6□□□□□ -0.55
VPS28-209ENST00000528142 C1orf64Q8NEQ6 169 aa11.6□□□□□ -0.55
VPS28-209ENST00000528142 KRTAP10-8P60410 259 aa11.58□□□□□ -0.56
VPS28-209ENST00000528142 RPS28P62857 69 aaKnown RBP11.58□□□□□ -0.56
VPS28-209ENST00000528142 ATP5EP56381 51 aaPredicted RBP11.57□□□□□ -0.56
VPS28-209ENST00000528142 KRTAP13-3Q3SY46 172 aa11.56□□□□□ -0.56
VPS28-209ENST00000528142 Q5W150 140 aa11.56□□□□□ -0.56
VPS28-209ENST00000528142 FLG2Q5D862 2391 aaPredicted RBP11.55□□□□□ -0.56
VPS28-209ENST00000528142 FAT3Q8TDW7 4589 aa11.52□□□□□ -0.56
VPS28-209ENST00000528142 HERC2O95714 4834 aa11.51□□□□□ -0.57
VPS28-209ENST00000528142 MYCBP2O75592 4640 aa11.49□□□□□ -0.57
VPS28-209ENST00000528142 TNXBP22105 4242 aa11.49□□□□□ -0.57
VPS28-209ENST00000528142 OXTP01178 125 aa11.47□□□□□ -0.57
VPS28-209ENST00000528142 SERP1Q9Y6X1 66 aa11.47□□□□□ -0.57
VPS28-209ENST00000528142 RETNLBQ9BQ08 111 aa11.44□□□□□ -0.58
VPS28-209ENST00000528142 SPANXA2-OT1Q8N9U9 137 aa11.43□□□□□ -0.58
VPS28-209ENST00000528142 LOC101927531A0A1B0GV80 90 aa11.42□□□□□ -0.58
VPS28-209ENST00000528142 ABCA13Q86UQ4 5058 aa11.42□□□□□ -0.58
VPS28-209ENST00000528142 MT1HL1P0DM35 61 aa11.41□□□□□ -0.58
VPS28-209ENST00000528142 CYP4F30PQ9H0H9 118 aa11.41□□□□□ -0.58
VPS28-209ENST00000528142 PCOTHQ58A44 107 aa11.39□□□□□ -0.59
VPS28-209ENST00000528142 PRR4Q16378 134 aa11.38□□□□□ -0.59
VPS28-209ENST00000528142 C9orf92A6NGG3 77 aa11.35□□□□□ -0.59
VPS28-209ENST00000528142 IGLV7-46A0A075B6I9 117 aa11.35□□□□□ -0.59
VPS28-209ENST00000528142 IGKV2-30P06310 120 aa11.31□□□□□ -0.6
VPS28-209ENST00000528142 C20orf166-AS1Q96NR2 134 aa11.31□□□□□ -0.6
VPS28-209ENST00000528142 A8MUU9 505 aa11.3□□□□□ -0.6
VPS28-209ENST00000528142 FP248Q71RG6 208 aaPredicted RBP11.26□□□□□ -0.61
VPS28-209ENST00000528142 DMBT1Q9UGM3 2413 aaPredicted RBP11.24□□□□□ -0.61
VPS28-209ENST00000528142 SMIM26A0A096LP01 95 aa11.21□□□□□ -0.62
VPS28-209ENST00000528142 HRES1P13985 223 aa11.19□□□□□ -0.62
VPS28-209ENST00000528142 IGKV2D-30A0A075B6S6 120 aa11.18□□□□□ -0.62
VPS28-209ENST00000528142 Q75L30 129 aa11.16□□□□□ -0.62
VPS28-209ENST00000528142 PCLOQ9Y6V0 5065 aa11.12□□□□□ -0.63
VPS28-209ENST00000528142 C7orf65Q6ZTY9 151 aa11.1□□□□□ -0.63
VPS28-209ENST00000528142 COA5Q86WW8 74 aa11.1□□□□□ -0.63
VPS28-209ENST00000528142 DMAC1Q96GE9 116 aa11.06□□□□□ -0.64
VPS28-209ENST00000528142 XP32Q5T750 250 aa11.03□□□□□ -0.64
VPS28-209ENST00000528142 J3QL48 77 aa11□□□□□ -0.65
VPS28-209ENST00000528142 ACYP2P14621 99 aa11□□□□□ -0.65
VPS28-209ENST00000528142 RPL37P61927 97 aaKnown RBP11□□□□□ -0.65
VPS28-209ENST00000528142 C4orf26Q17RF5 130 aa11□□□□□ -0.65
VPS28-209ENST00000528142 MPLKIPQ8TAP9 179 aa10.99□□□□□ -0.65
VPS28-209ENST00000528142 SPINK7P58062 85 aa10.97□□□□□ -0.65
VPS28-209ENST00000528142 ATP11AUNQ6ZP68 121 aa10.96□□□□□ -0.65
VPS28-209ENST00000528142 Q1T7F1 81 aa10.95□□□□□ -0.66
VPS28-209ENST00000528142 TPRXLQ17RH7 258 aa10.91□□□□□ -0.66
VPS28-209ENST00000528142 A8MUN3 132 aa10.84□□□□□ -0.67
VPS28-209ENST00000528142 V9GYY9 64 aa10.84□□□□□ -0.67
VPS28-209ENST00000528142 CHKB-CPT1BH3BT56 60 aa10.81□□□□□ -0.68
VPS28-209ENST00000528142 KRTAP3-1Q9BYR8 98 aa10.8□□□□□ -0.68
VPS28-209ENST00000528142 HERC1Q15751 4861 aa10.8□□□□□ -0.68
VPS28-209ENST00000528142 LPAP08519 4548 aa10.79□□□□□ -0.68
VPS28-209ENST00000528142 PSPHP1O15172 72 aa10.74□□□□□ -0.69
VPS28-209ENST00000528142 LINC01558Q9Y6Z2 57 aa10.74□□□□□ -0.69
VPS28-209ENST00000528142 COX6B2Q6YFQ2 88 aa10.72□□□□□ -0.69
VPS28-209ENST00000528142 PRR15LQ9BU68 103 aa10.67□□□□□ -0.7
VPS28-209ENST00000528142 Q5VV11 94 aa10.66□□□□□ -0.7
VPS28-209ENST00000528142 LRP2P98164 4655 aa10.66□□□□□ -0.7
VPS28-209ENST00000528142 HMCN2Q8NDA2 5059 aa10.61□□□□□ -0.71
VPS28-209ENST00000528142 SPTSSBQ8NFR3 76 aa10.51□□□□□ -0.73
VPS28-209ENST00000528142 SEC61BP60468 96 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms