RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KRTAP29-1A8MX34 341 aaPredicted RBP11.86□□□□□ -0.51
VPS28-208ENST00000527797 LRP1Q07954 4544 aaKnown RBP11.86□□□□□ -0.51
VPS28-208ENST00000527797 C8orf17Q9NRJ1 99 aa11.84□□□□□ -0.51
VPS28-208ENST00000527797 WFDC13Q8IUB5 93 aa11.83□□□□□ -0.52
VPS28-208ENST00000527797 MMP24-AS1A0A0U1RRL7 71 aa11.82□□□□□ -0.52
VPS28-208ENST00000527797 HERC2O95714 4834 aa11.82□□□□□ -0.52
VPS28-208ENST00000527797 CASC2Q6XLA1 102 aa11.82□□□□□ -0.52
VPS28-208ENST00000527797 ATOX1O00244 68 aa11.81□□□□□ -0.52
VPS28-208ENST00000527797 FAT3Q8TDW7 4589 aa11.81□□□□□ -0.52
VPS28-208ENST00000527797 C8orf87E5RJ46 101 aa11.8□□□□□ -0.52
VPS28-208ENST00000527797 RETNLBQ9BQ08 111 aa11.8□□□□□ -0.52
VPS28-208ENST00000527797 hDV103S1A0JD37 113 aa11.78□□□□□ -0.52
VPS28-208ENST00000527797 NOTCH2NLQ7Z3S9 236 aa11.78□□□□□ -0.52
VPS28-208ENST00000527797 LINC00313P59037 77 aa11.76□□□□□ -0.53
VPS28-208ENST00000527797 TNXBP22105 4242 aa11.75□□□□□ -0.53
VPS28-208ENST00000527797 ANAPC13Q9BS18 74 aa11.75□□□□□ -0.53
VPS28-208ENST00000527797 MYCBP2O75592 4640 aa11.72□□□□□ -0.53
VPS28-208ENST00000527797 J3QL48 77 aa11.71□□□□□ -0.53
VPS28-208ENST00000527797 SMIM20Q8N5G0 67 aa11.71□□□□□ -0.53
VPS28-208ENST00000527797 TMEM254Q8TBM7 123 aa11.71□□□□□ -0.53
VPS28-208ENST00000527797 FP248Q71RG6 208 aaPredicted RBP11.69□□□□□ -0.54
VPS28-208ENST00000527797 MRPL34Q9BQ48 92 aaKnown RBP11.69□□□□□ -0.54
VPS28-208ENST00000527797 ABCA13Q86UQ4 5058 aa11.68□□□□□ -0.54
VPS28-208ENST00000527797 DMBT1Q9UGM3 2413 aaPredicted RBP11.67□□□□□ -0.54
VPS28-208ENST00000527797 PCP4P48539 62 aa11.66□□□□□ -0.54
VPS28-208ENST00000527797 TRAV7A0A075B6U4 112 aa11.65□□□□□ -0.54
VPS28-208ENST00000527797 SERP2Q8N6R1 65 aa11.65□□□□□ -0.54
VPS28-208ENST00000527797 OCR1Q9BZK8 76 aa11.65□□□□□ -0.54
VPS28-208ENST00000527797 KRTAP16-1A8MUX0 517 aa11.62□□□□□ -0.55
VPS28-208ENST00000527797 NDUFS5O43920 106 aa11.61□□□□□ -0.55
VPS28-208ENST00000527797 IGLV7-46A0A075B6I9 117 aa11.6□□□□□ -0.55
VPS28-208ENST00000527797 C9orf92A6NGG3 77 aa11.6□□□□□ -0.55
VPS28-208ENST00000527797 COX7CP15954 63 aa11.58□□□□□ -0.56
VPS28-208ENST00000527797 TP53AIP1Q9HCN2 124 aa11.57□□□□□ -0.56
VPS28-208ENST00000527797 UQCRQO14949 82 aa11.57□□□□□ -0.56
VPS28-208ENST00000527797 PRR4Q16378 134 aa11.57□□□□□ -0.56
VPS28-208ENST00000527797 Q8N9P0 234 aaPredicted RBP11.57□□□□□ -0.56
VPS28-208ENST00000527797 C5orf47Q569G3 176 aa11.49□□□□□ -0.57
VPS28-208ENST00000527797 KRTAP13-3Q3SY46 172 aa11.48□□□□□ -0.57
VPS28-208ENST00000527797 CCDC179H3BU77 68 aa11.47□□□□□ -0.57
VPS28-208ENST00000527797 PCLOQ9Y6V0 5065 aa11.47□□□□□ -0.57
VPS28-208ENST00000527797 C20orf166-AS1Q96NR2 134 aa11.45□□□□□ -0.58
VPS28-208ENST00000527797 TRAV22A0A0B4J277 110 aa11.44□□□□□ -0.58
VPS28-208ENST00000527797 MP68P56378 58 aa11.44□□□□□ -0.58
VPS28-208ENST00000527797 A8MUU9 505 aa11.43□□□□□ -0.58
VPS28-208ENST00000527797 C20orf197Q8N268 126 aa11.43□□□□□ -0.58
VPS28-208ENST00000527797 H0Y9P7 68 aa11.42□□□□□ -0.58
VPS28-208ENST00000527797 TPRXLQ17RH7 258 aa11.4□□□□□ -0.58
VPS28-208ENST00000527797 Q5W150 140 aa11.39□□□□□ -0.59
VPS28-208ENST00000527797 Q75L30 129 aa11.38□□□□□ -0.59
VPS28-208ENST00000527797 A0A0U1RQV1 116 aa11.37□□□□□ -0.59
VPS28-208ENST00000527797 H3BPC8 53 aa11.37□□□□□ -0.59
VPS28-208ENST00000527797 XP32Q5T750 250 aa11.36□□□□□ -0.59
VPS28-208ENST00000527797 SNURFQ9Y675 71 aa11.36□□□□□ -0.59
VPS28-208ENST00000527797 LINC00208Q96KT6 92 aa11.35□□□□□ -0.59
VPS28-208ENST00000527797 KLKP1Q107X0 134 aa11.35□□□□□ -0.59
VPS28-208ENST00000527797 ZCCHC13Q8WW36 166 aaKnown RBP11.35□□□□□ -0.59
VPS28-208ENST00000527797 C1orf64Q8NEQ6 169 aa11.32□□□□□ -0.6
VPS28-208ENST00000527797 RPL37P61927 97 aaKnown RBP11.29□□□□□ -0.6
VPS28-208ENST00000527797 LOC101927531A0A1B0GV80 90 aa11.26□□□□□ -0.61
VPS28-208ENST00000527797 ATP11AUNQ6ZP68 121 aa11.26□□□□□ -0.61
VPS28-208ENST00000527797 CYSTM1Q9H1C7 97 aa11.26□□□□□ -0.61
VPS28-208ENST00000527797 NDUFC1O43677 76 aa11.22□□□□□ -0.61
VPS28-208ENST00000527797 IGKV2-30P06310 120 aa11.2□□□□□ -0.62
VPS28-208ENST00000527797 CYP4F30PQ9H0H9 118 aa11.17□□□□□ -0.62
VPS28-208ENST00000527797 H7BZZ5 65 aa11.17□□□□□ -0.62
VPS28-208ENST00000527797 IGKV2D-30A0A075B6S6 120 aa11.16□□□□□ -0.62
VPS28-208ENST00000527797 PCOTHQ58A44 107 aa11.13□□□□□ -0.63
VPS28-208ENST00000527797 C7orf65Q6ZTY9 151 aa11.13□□□□□ -0.63
VPS28-208ENST00000527797 SPINK7P58062 85 aa11.06□□□□□ -0.64
VPS28-208ENST00000527797 TMEM258P61165 79 aa11.06□□□□□ -0.64
VPS28-208ENST00000527797 SEC61BP60468 96 aaKnown RBP11.04□□□□□ -0.64
VPS28-208ENST00000527797 LPAP08519 4548 aa11.01□□□□□ -0.65
VPS28-208ENST00000527797 HRES1P13985 223 aa10.99□□□□□ -0.65
VPS28-208ENST00000527797 SPANXA2-OT1Q8N9U9 137 aa10.99□□□□□ -0.65
VPS28-208ENST00000527797 FAM236DA0A1B0GTK5 79 aa10.98□□□□□ -0.65
VPS28-208ENST00000527797 FAM236CP0DP71 79 aa10.98□□□□□ -0.65
VPS28-208ENST00000527797 HERC1Q15751 4861 aa10.97□□□□□ -0.65
VPS28-208ENST00000527797 ATP5EP56381 51 aaPredicted RBP10.95□□□□□ -0.66
VPS28-208ENST00000527797 LRP2P98164 4655 aa10.93□□□□□ -0.66
VPS28-208ENST00000527797 HMCN2Q8NDA2 5059 aa10.88□□□□□ -0.67
VPS28-208ENST00000527797 C4orf26Q17RF5 130 aa10.87□□□□□ -0.67
VPS28-208ENST00000527797 DMAC1Q96GE9 116 aa10.8□□□□□ -0.68
VPS28-208ENST00000527797 COX6B2Q6YFQ2 88 aa10.76□□□□□ -0.69
VPS28-208ENST00000527797 ACYP2P14621 99 aa10.75□□□□□ -0.69
VPS28-208ENST00000527797 KRTAP4-1Q9BYQ7 146 aa10.75□□□□□ -0.69
VPS28-208ENST00000527797 A8MUN3 132 aa10.74□□□□□ -0.69
VPS28-208ENST00000527797 SERP1Q9Y6X1 66 aa10.73□□□□□ -0.69
VPS28-208ENST00000527797 KRTAP3-1Q9BYR8 98 aa10.7□□□□□ -0.7
VPS28-208ENST00000527797 MPLKIPQ8TAP9 179 aa10.69□□□□□ -0.7
VPS28-208ENST00000527797 RBM12B-AS1Q9P1G2 102 aa10.69□□□□□ -0.7
VPS28-208ENST00000527797 MUC17Q685J3 4493 aa10.68□□□□□ -0.7
VPS28-208ENST00000527797 COA5Q86WW8 74 aa10.66□□□□□ -0.7
VPS28-208ENST00000527797 RPS28P62857 69 aaKnown RBP10.65□□□□□ -0.7
VPS28-208ENST00000527797 CHKB-CPT1BH3BT56 60 aa10.58□□□□□ -0.72
VPS28-208ENST00000527797 H1FX-AS1Q4G0G2 97 aa10.55□□□□□ -0.72
VPS28-208ENST00000527797 S4R3F8 94 aa10.44□□□□□ -0.74
VPS28-208ENST00000527797 SMIM26A0A096LP01 95 aa10.43□□□□□ -0.74
VPS28-208ENST00000527797 KRTAP19-2Q3LHN2 52 aa10.43□□□□□ -0.74
VPS28-208ENST00000527797 SPTSSBQ8NFR3 76 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms