RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SMIM20Q8N5G0 67 aa9.12□□□□□ -0.95
NUP54-214ENST00000514307 IGHV6-1A0A0B4J1U7 121 aa9.11□□□□□ -0.95
NUP54-214ENST00000514307 FLG2Q5D862 2391 aaPredicted RBP9.1□□□□□ -0.95
NUP54-214ENST00000514307 C8orf87E5RJ46 101 aa9.09□□□□□ -0.95
NUP54-214ENST00000514307 CASC2Q6XLA1 102 aa9.08□□□□□ -0.96
NUP54-214ENST00000514307 ANAPC13Q9BS18 74 aa9.08□□□□□ -0.96
NUP54-214ENST00000514307 C8orf17Q9NRJ1 99 aa9.07□□□□□ -0.96
NUP54-214ENST00000514307 LINC00313P59037 77 aa9.06□□□□□ -0.96
NUP54-214ENST00000514307 PKHD1L1Q86WI1 4243 aa9.05□□□□□ -0.96
NUP54-214ENST00000514307 hDV103S1A0JD37 113 aa9.05□□□□□ -0.96
NUP54-214ENST00000514307 KRTAP29-1A8MX34 341 aaPredicted RBP9.05□□□□□ -0.96
NUP54-214ENST00000514307 WFDC13Q8IUB5 93 aa9.04□□□□□ -0.96
NUP54-214ENST00000514307 MMP24-AS1A0A0U1RRL7 71 aa9.02□□□□□ -0.97
NUP54-214ENST00000514307 MT1HL1P0DM35 61 aa9.02□□□□□ -0.97
NUP54-214ENST00000514307 PCP4P48539 62 aa9.02□□□□□ -0.97
NUP54-214ENST00000514307 TRAV7A0A075B6U4 112 aa9.01□□□□□ -0.97
NUP54-214ENST00000514307 TMEM254Q8TBM7 123 aa9.01□□□□□ -0.97
NUP54-214ENST00000514307 MYCBP2O75592 4640 aa9.01□□□□□ -0.97
NUP54-214ENST00000514307 SERP2Q8N6R1 65 aa9□□□□□ -0.97
NUP54-214ENST00000514307 FP248Q71RG6 208 aaPredicted RBP8.98□□□□□ -0.97
NUP54-214ENST00000514307 MRPL34Q9BQ48 92 aaKnown RBP8.98□□□□□ -0.97
NUP54-214ENST00000514307 TP53AIP1Q9HCN2 124 aa8.97□□□□□ -0.97
NUP54-214ENST00000514307 DMBT1Q9UGM3 2413 aaPredicted RBP8.97□□□□□ -0.97
NUP54-214ENST00000514307 J3QL48 77 aa8.95□□□□□ -0.98
NUP54-214ENST00000514307 UQCRQO14949 82 aa8.94□□□□□ -0.98
NUP54-214ENST00000514307 COX7CP15954 63 aa8.94□□□□□ -0.98
NUP54-214ENST00000514307 NOTCH2NLQ7Z3S9 236 aa8.94□□□□□ -0.98
NUP54-214ENST00000514307 OCR1Q9BZK8 76 aa8.94□□□□□ -0.98
NUP54-214ENST00000514307 NDUFS5O43920 106 aa8.92□□□□□ -0.98
NUP54-214ENST00000514307 C5orf47Q569G3 176 aa8.92□□□□□ -0.98
NUP54-214ENST00000514307 RETNLBQ9BQ08 111 aa8.92□□□□□ -0.98
NUP54-214ENST00000514307 HERC1Q15751 4861 aa8.9□□□□□ -0.99
NUP54-214ENST00000514307 IGLV7-46A0A075B6I9 117 aa8.88□□□□□ -0.99
NUP54-214ENST00000514307 Q8N9P0 234 aaPredicted RBP8.87□□□□□ -0.99
NUP54-214ENST00000514307 LRP1Q07954 4544 aaKnown RBP8.87□□□□□ -0.99
NUP54-214ENST00000514307 MP68P56378 58 aa8.86□□□□□ -0.99
NUP54-214ENST00000514307 KRTAP16-1A8MUX0 517 aa8.84□□□□□ -0.99
NUP54-214ENST00000514307 PRR4Q16378 134 aa8.83□□□□□ -1
NUP54-214ENST00000514307 FAT3Q8TDW7 4589 aa8.82□□□□□ -1
NUP54-214ENST00000514307 C9orf92A6NGG3 77 aa8.82□□□□□ -1
NUP54-214ENST00000514307 H3BPC8 53 aa8.82□□□□□ -1
NUP54-214ENST00000514307 CCDC179H3BU77 68 aa8.8□□□□□ -1
NUP54-214ENST00000514307 C20orf197Q8N268 126 aa8.79□□□□□ -1
NUP54-214ENST00000514307 TNXBP22105 4242 aa8.78□□□□□ -1
NUP54-214ENST00000514307 TRAV22A0A0B4J277 110 aa8.78□□□□□ -1
NUP54-214ENST00000514307 H0Y9P7 68 aa8.78□□□□□ -1
NUP54-214ENST00000514307 C20orf166-AS1Q96NR2 134 aa8.76□□□□□ -1.01
NUP54-214ENST00000514307 A8MUU9 505 aa8.75□□□□□ -1.01
NUP54-214ENST00000514307 NDUFC1O43677 76 aa8.74□□□□□ -1.01
NUP54-214ENST00000514307 KLKP1Q107X0 134 aa8.74□□□□□ -1.01
NUP54-214ENST00000514307 KRTAP13-3Q3SY46 172 aa8.74□□□□□ -1.01
NUP54-214ENST00000514307 A0A0U1RQV1 116 aa8.73□□□□□ -1.01
NUP54-214ENST00000514307 LINC00208Q96KT6 92 aa8.73□□□□□ -1.01
NUP54-214ENST00000514307 Q75L30 129 aa8.72□□□□□ -1.01
NUP54-214ENST00000514307 C1orf64Q8NEQ6 169 aa8.72□□□□□ -1.01
NUP54-214ENST00000514307 TPRXLQ17RH7 258 aa8.7□□□□□ -1.02
NUP54-214ENST00000514307 SNURFQ9Y675 71 aa8.7□□□□□ -1.02
NUP54-214ENST00000514307 Q5W150 140 aa8.69□□□□□ -1.02
NUP54-214ENST00000514307 ZCCHC13Q8WW36 166 aaKnown RBP8.69□□□□□ -1.02
NUP54-214ENST00000514307 LOC101927531A0A1B0GV80 90 aa8.68□□□□□ -1.02
NUP54-214ENST00000514307 ATP11AUNQ6ZP68 121 aa8.67□□□□□ -1.02
NUP54-214ENST00000514307 XP32Q5T750 250 aa8.63□□□□□ -1.03
NUP54-214ENST00000514307 RPL37P61927 97 aaKnown RBP8.62□□□□□ -1.03
NUP54-214ENST00000514307 CYP4F30PQ9H0H9 118 aa8.6□□□□□ -1.03
NUP54-214ENST00000514307 HMCN2Q8NDA2 5059 aa8.59□□□□□ -1.03
NUP54-214ENST00000514307 IGKV2-30P06310 120 aa8.58□□□□□ -1.04
NUP54-214ENST00000514307 H7BZZ5 65 aa8.57□□□□□ -1.04
NUP54-214ENST00000514307 TMEM258P61165 79 aa8.56□□□□□ -1.04
NUP54-214ENST00000514307 IGKV2D-30A0A075B6S6 120 aa8.54□□□□□ -1.04
NUP54-214ENST00000514307 CYSTM1Q9H1C7 97 aa8.54□□□□□ -1.04
NUP54-214ENST00000514307 C7orf65Q6ZTY9 151 aa8.53□□□□□ -1.04
NUP54-214ENST00000514307 PCOTHQ58A44 107 aa8.51□□□□□ -1.05
NUP54-214ENST00000514307 ATP5EP56381 51 aaPredicted RBP8.5□□□□□ -1.05
NUP54-214ENST00000514307 SPANXA2-OT1Q8N9U9 137 aa8.5□□□□□ -1.05
NUP54-214ENST00000514307 SPINK7P58062 85 aa8.49□□□□□ -1.05
NUP54-214ENST00000514307 SEC61BP60468 96 aaKnown RBP8.49□□□□□ -1.05
NUP54-214ENST00000514307 UBR4Q5T4S7 5183 aa8.47□□□□□ -1.05
NUP54-214ENST00000514307 FAM236DA0A1B0GTK5 79 aa8.45□□□□□ -1.06
NUP54-214ENST00000514307 FAM236CP0DP71 79 aa8.45□□□□□ -1.06
NUP54-214ENST00000514307 HRES1P13985 223 aa8.42□□□□□ -1.06
NUP54-214ENST00000514307 LRP2P98164 4655 aa8.35□□□□□ -1.07
NUP54-214ENST00000514307 ACYP2P14621 99 aa8.34□□□□□ -1.07
NUP54-214ENST00000514307 RPS28P62857 69 aaKnown RBP8.32□□□□□ -1.08
NUP54-214ENST00000514307 SERP1Q9Y6X1 66 aa8.32□□□□□ -1.08
NUP54-214ENST00000514307 A8MUN3 132 aa8.31□□□□□ -1.08
NUP54-214ENST00000514307 C4orf26Q17RF5 130 aa8.31□□□□□ -1.08
NUP54-214ENST00000514307 LPAP08519 4548 aa8.3□□□□□ -1.08
NUP54-214ENST00000514307 DMAC1Q96GE9 116 aa8.28□□□□□ -1.08
NUP54-214ENST00000514307 COX6B2Q6YFQ2 88 aa8.27□□□□□ -1.09
NUP54-214ENST00000514307 RBM12B-AS1Q9P1G2 102 aa8.25□□□□□ -1.09
NUP54-214ENST00000514307 RNF213Q63HN8 5207 aa8.22□□□□□ -1.09
NUP54-214ENST00000514307 CHKB-CPT1BH3BT56 60 aa8.19□□□□□ -1.1
NUP54-214ENST00000514307 COA5Q86WW8 74 aa8.19□□□□□ -1.1
NUP54-214ENST00000514307 KRTAP3-1Q9BYR8 98 aa8.15□□□□□ -1.1
NUP54-214ENST00000514307 MPLKIPQ8TAP9 179 aa8.14□□□□□ -1.11
NUP54-214ENST00000514307 SMIM26A0A096LP01 95 aa8.12□□□□□ -1.11
NUP54-214ENST00000514307 SPTSSBQ8NFR3 76 aa8.12□□□□□ -1.11
NUP54-214ENST00000514307 H1FX-AS1Q4G0G2 97 aa8.11□□□□□ -1.11
NUP54-214ENST00000514307 KRTAP4-1Q9BYQ7 146 aa8.08□□□□□ -1.12
NUP54-214ENST00000514307 V9GYY9 64 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms