RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 ASPMQ8IZT6 3477 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 SPRR5A0A1B0GTR4 108 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 LRBAP50851 2863 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 WNK1Q9H4A3 2382 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 DCHS2Q6V1P9 2916 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 ATMQ13315 3056 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 HIVEP3Q5T1R4 2406 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 MUC3AQ02505 3323 aa2.16□□□□□ -2.06
RTN4-213ENST00000485749 FN1P02751 2386 aaKnown RBP2.15□□□□□ -2.06
RTN4-213ENST00000485749 ZNF292O60281 2723 aa2.15□□□□□ -2.06
RTN4-213ENST00000485749 UNC79Q9P2D8 2635 aa2.15□□□□□ -2.06
RTN4-213ENST00000485749 LCE1CQ5T751 118 aa2.15□□□□□ -2.07
RTN4-213ENST00000485749 LCE1BQ5T7P3 118 aa2.15□□□□□ -2.07
RTN4-213ENST00000485749 DOPEY1Q5JWR5 2465 aa2.14□□□□□ -2.07
RTN4-213ENST00000485749 A0A096LNI7 61 aa2.14□□□□□ -2.07
RTN4-213ENST00000485749 RIF1Q5UIP0 2472 aaKnown RBP2.13□□□□□ -2.07
RTN4-213ENST00000485749 CELSR1Q9NYQ6 3014 aa2.13□□□□□ -2.07
RTN4-213ENST00000485749 DMXL1Q9Y485 3027 aa2.13□□□□□ -2.07
RTN4-213ENST00000485749 H0YAA0 97 aa2.13□□□□□ -2.07
RTN4-213ENST00000485749 KRTAP10-1P60331 282 aa2.13□□□□□ -2.07
RTN4-213ENST00000485749 CSPG4Q6UVK1 2322 aa2.13□□□□□ -2.07
RTN4-213ENST00000485749 TTC28Q96AY4 2481 aa2.13□□□□□ -2.07
RTN4-213ENST00000485749 C2CD3Q4AC94 2353 aa2.12□□□□□ -2.07
RTN4-213ENST00000485749 MUC6Q6W4X9 2439 aa2.12□□□□□ -2.07
RTN4-213ENST00000485749 IGF2RP11717 2491 aa2.11□□□□□ -2.07
RTN4-213ENST00000485749 J3QKU1 62 aa2.1□□□□□ -2.07
RTN4-213ENST00000485749 KRTAP13-4Q3LI77 160 aa2.1□□□□□ -2.07
RTN4-213ENST00000485749 KRTAP13-1Q8IUC0 172 aa2.1□□□□□ -2.07
RTN4-213ENST00000485749 NBASA2RRP1 2371 aa2.1□□□□□ -2.07
RTN4-213ENST00000485749 CEP295Q9C0D2 2601 aa2.1□□□□□ -2.07
RTN4-213ENST00000485749 H1FX-AS1Q4G0G2 97 aa2.09□□□□□ -2.07
RTN4-213ENST00000485749 SMR3AQ99954 134 aa2.09□□□□□ -2.07
RTN4-213ENST00000485749 RELNP78509 3460 aa2.09□□□□□ -2.08
RTN4-213ENST00000485749 SVEP1Q4LDE5 3571 aa2.08□□□□□ -2.08
RTN4-213ENST00000485749 SPG11Q96JI7 2443 aa2.08□□□□□ -2.08
RTN4-213ENST00000485749 LAMA5O15230 3695 aa2.08□□□□□ -2.08
RTN4-213ENST00000485749 NAV2Q8IVL1 2488 aa2.08□□□□□ -2.08
RTN4-213ENST00000485749 ASH1LQ9NR48 2969 aaKnown RBP2.07□□□□□ -2.08
RTN4-213ENST00000485749 Q6ZSA8 131 aa2.07□□□□□ -2.08
RTN4-213ENST00000485749 MAP1AP78559 2803 aaPredicted RBP2.06□□□□□ -2.08
RTN4-213ENST00000485749 C10orf95Q9H7T3 257 aa2.06□□□□□ -2.08
RTN4-213ENST00000485749 APLNQ9ULZ1 77 aa2.05□□□□□ -2.08
RTN4-213ENST00000485749 FBN2P35556 2912 aa2.05□□□□□ -2.08
RTN4-213ENST00000485749 COL12A1Q99715 3063 aa2.05□□□□□ -2.08
RTN4-213ENST00000485749 MYO9AB2RTY4 2548 aa2.05□□□□□ -2.08
RTN4-213ENST00000485749 TLN2Q9Y4G6 2542 aa2.05□□□□□ -2.08
RTN4-213ENST00000485749 USP9YO00507 2555 aaPredicted RBP2.04□□□□□ -2.08
RTN4-213ENST00000485749 SPINK6Q6UWN8 80 aa2.04□□□□□ -2.08
RTN4-213ENST00000485749 USP9XQ93008 2570 aaPredicted RBP2.04□□□□□ -2.08
RTN4-213ENST00000485749 CHD6Q8TD26 2715 aa2.04□□□□□ -2.08
RTN4-213ENST00000485749 SETXQ7Z333 2677 aaKnown RBP2.03□□□□□ -2.08
RTN4-213ENST00000485749 PKD1L2Q7Z442 2459 aa2.03□□□□□ -2.08
RTN4-213ENST00000485749 ACACBO00763 2458 aa2.02□□□□□ -2.09
RTN4-213ENST00000485749 K7EIL1 84 aa2.02□□□□□ -2.09
RTN4-213ENST00000485749 JMJD1CQ15652 2540 aa2.02□□□□□ -2.09
RTN4-213ENST00000485749 CRYBG3Q68DQ2 2970 aa2.01□□□□□ -2.09
RTN4-213ENST00000485749 MXRA5Q9NR99 2828 aa2.01□□□□□ -2.09
RTN4-213ENST00000485749 NCOR2Q9Y618 2525 aa2.01□□□□□ -2.09
RTN4-213ENST00000485749 HIVEP2P31629 2446 aa2.01□□□□□ -2.09
RTN4-213ENST00000485749 ANK3Q12955 4377 aaKnown RBP2.01□□□□□ -2.09
RTN4-213ENST00000485749 EPG5Q9HCE0 2579 aa2.01□□□□□ -2.09
RTN4-213ENST00000485749 PTPN13Q12923 2485 aa2□□□□□ -2.09
RTN4-213ENST00000485749 ITPR1Q14643 2758 aa2□□□□□ -2.09
RTN4-213ENST00000485749 VPS13CQ709C8 3753 aa2□□□□□ -2.09
RTN4-213ENST00000485749 POLQO75417 2590 aa2□□□□□ -2.09
RTN4-213ENST00000485749 UBR5O95071 2799 aaPredicted RBP1.99□□□□□ -2.09
RTN4-213ENST00000485749 FAM208BQ5VWN6 2430 aa1.99□□□□□ -2.09
RTN4-213ENST00000485749 ITPR3Q14573 2671 aa1.99□□□□□ -2.09
RTN4-213ENST00000485749 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
RTN4-213ENST00000485749 UTP20O75691 2785 aaKnown RBP1.99□□□□□ -2.09
RTN4-213ENST00000485749 CELSR2Q9HCU4 2923 aa1.99□□□□□ -2.09
RTN4-213ENST00000485749 AKAP9Q99996 3911 aa1.98□□□□□ -2.09
RTN4-213ENST00000485749 ZNF462Q96JM2 2506 aa1.98□□□□□ -2.09
RTN4-213ENST00000485749 SONP18583 2426 aaKnown RBP1.98□□□□□ -2.09
RTN4-213ENST00000485749 ZANQ9Y493 2812 aa1.98□□□□□ -2.09
RTN4-213ENST00000485749 TEX15Q9BXT5 2789 aa1.98□□□□□ -2.09
RTN4-213ENST00000485749 NBPF19A0A087WUL8 3843 aa1.98□□□□□ -2.09
RTN4-213ENST00000485749 DNAH1Q9P2D7 4330 aa1.98□□□□□ -2.09
RTN4-213ENST00000485749 ZFYVE26Q68DK2 2539 aa1.97□□□□□ -2.09
RTN4-213ENST00000485749 CSMD2Q7Z408 3487 aa1.97□□□□□ -2.09
RTN4-213ENST00000485749 Q5VSD8 79 aa1.97□□□□□ -2.09
RTN4-213ENST00000485749 LRRK2Q5S007 2527 aa1.97□□□□□ -2.09
RTN4-213ENST00000485749 CHD8Q9HCK8 2581 aa1.97□□□□□ -2.09
RTN4-213ENST00000485749 CFAP46Q8IYW2 2715 aa1.97□□□□□ -2.09
RTN4-213ENST00000485749 CACNA1AO00555 2505 aa1.96□□□□□ -2.09
RTN4-213ENST00000485749 GCN1Q92616 2671 aaKnown RBP1.96□□□□□ -2.1
RTN4-213ENST00000485749 MYO18BQ8IUG5 2567 aa1.96□□□□□ -2.1
RTN4-213ENST00000485749 SPINK1P00995 79 aa1.96□□□□□ -2.1
RTN4-213ENST00000485749 FLNAP21333 2647 aaKnown RBP1.96□□□□□ -2.1
RTN4-213ENST00000485749 IGSF10Q6WRI0 2623 aa1.96□□□□□ -2.1
RTN4-213ENST00000485749 NBEAL2Q6ZNJ1 2754 aa1.96□□□□□ -2.1
RTN4-213ENST00000485749 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
RTN4-213ENST00000485749 CCDC168Q8NDH2 2452 aa1.95□□□□□ -2.1
RTN4-213ENST00000485749 ABCA12Q86UK0 2595 aa1.95□□□□□ -2.1
RTN4-213ENST00000485749 RPS29P62273 56 aaKnown RBP1.95□□□□□ -2.1
RTN4-213ENST00000485749 PIEZO1Q92508 2521 aa1.95□□□□□ -2.1
RTN4-213ENST00000485749 APCP25054 2843 aa1.95□□□□□ -2.1
RTN4-213ENST00000485749 FLNCQ14315 2725 aa1.94□□□□□ -2.1
RTN4-213ENST00000485749 SPTBN4Q9H254 2564 aa1.93□□□□□ -2.1
RTN4-213ENST00000485749 ALMS1Q8TCU4 4167 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms