RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 PRR15Q8IV56 129 aa8.23□□□□□ -1.09
COL4A6-206ENST00000477085 SPAG11AQ6PDA7 123 aa8.22□□□□□ -1.09
COL4A6-206ENST00000477085 SMIM20Q8N5G0 67 aa8.2□□□□□ -1.1
COL4A6-206ENST00000477085 LIMD2Q9BT23 127 aa8.2□□□□□ -1.1
COL4A6-206ENST00000477085 TRAV7A0A075B6U4 112 aa8.2□□□□□ -1.1
COL4A6-206ENST00000477085 RPS29P62273 56 aaKnown RBP8.2□□□□□ -1.1
COL4A6-206ENST00000477085 FLG2Q5D862 2391 aaPredicted RBP8.19□□□□□ -1.1
COL4A6-206ENST00000477085 MT1HL1P0DM35 61 aa8.18□□□□□ -1.1
COL4A6-206ENST00000477085 NOTCH2NLQ7Z3S9 236 aa8.17□□□□□ -1.1
COL4A6-206ENST00000477085 HERC2O95714 4834 aa8.17□□□□□ -1.1
COL4A6-206ENST00000477085 A0A1B0GVX0 72 aa8.17□□□□□ -1.1
COL4A6-206ENST00000477085 IGHV6-1A0A0B4J1U7 121 aa8.15□□□□□ -1.1
COL4A6-206ENST00000477085 MMP24-AS1A0A0U1RRL7 71 aa8.15□□□□□ -1.1
COL4A6-206ENST00000477085 KRTAP29-1A8MX34 341 aaPredicted RBP8.15□□□□□ -1.1
COL4A6-206ENST00000477085 HCG22E2RYF7 251 aa8.15□□□□□ -1.1
COL4A6-206ENST00000477085 NDUFB1O75438 58 aa8.15□□□□□ -1.1
COL4A6-206ENST00000477085 CYSTM1Q9H1C7 97 aa8.15□□□□□ -1.1
COL4A6-206ENST00000477085 ABCA13Q86UQ4 5058 aa8.14□□□□□ -1.11
COL4A6-206ENST00000477085 WFDC13Q8IUB5 93 aa8.14□□□□□ -1.11
COL4A6-206ENST00000477085 C8orf17Q9NRJ1 99 aa8.12□□□□□ -1.11
COL4A6-206ENST00000477085 OCR1Q9BZK8 76 aa8.11□□□□□ -1.11
COL4A6-206ENST00000477085 CASC2Q6XLA1 102 aa8.1□□□□□ -1.11
COL4A6-206ENST00000477085 C20orf197Q8N268 126 aa8.1□□□□□ -1.11
COL4A6-206ENST00000477085 RETNLBQ9BQ08 111 aa8.1□□□□□ -1.11
COL4A6-206ENST00000477085 hDV103S1A0JD37 113 aa8.07□□□□□ -1.12
COL4A6-206ENST00000477085 KLKP1Q107X0 134 aa8.07□□□□□ -1.12
COL4A6-206ENST00000477085 OXTP01178 125 aa8.06□□□□□ -1.12
COL4A6-206ENST00000477085 TMEM258P61165 79 aa8.05□□□□□ -1.12
COL4A6-206ENST00000477085 LINC00313P59037 77 aa8.03□□□□□ -1.12
COL4A6-206ENST00000477085 C8orf87E5RJ46 101 aa8.02□□□□□ -1.13
COL4A6-206ENST00000477085 DMBT1Q9UGM3 2413 aaPredicted RBP8.02□□□□□ -1.13
COL4A6-206ENST00000477085 KRTAP16-1A8MUX0 517 aa8.02□□□□□ -1.13
COL4A6-206ENST00000477085 TMEM254Q8TBM7 123 aa8.02□□□□□ -1.13
COL4A6-206ENST00000477085 SNURFQ9Y675 71 aa8.02□□□□□ -1.13
COL4A6-206ENST00000477085 MRPL34Q9BQ48 92 aaKnown RBP8.01□□□□□ -1.13
COL4A6-206ENST00000477085 H7BZZ5 65 aa8□□□□□ -1.13
COL4A6-206ENST00000477085 A0A0U1RQV1 116 aa7.99□□□□□ -1.13
COL4A6-206ENST00000477085 NDUFC1O43677 76 aa7.96□□□□□ -1.14
COL4A6-206ENST00000477085 C9orf92A6NGG3 77 aa7.94□□□□□ -1.14
COL4A6-206ENST00000477085 Q8N9P0 234 aaPredicted RBP7.94□□□□□ -1.14
COL4A6-206ENST00000477085 LCE2DQ5TA82 110 aaPredicted RBP7.94□□□□□ -1.14
COL4A6-206ENST00000477085 FAM236DA0A1B0GTK5 79 aa7.93□□□□□ -1.14
COL4A6-206ENST00000477085 NDUFS5O43920 106 aa7.93□□□□□ -1.14
COL4A6-206ENST00000477085 FAM236CP0DP71 79 aa7.93□□□□□ -1.14
COL4A6-206ENST00000477085 C5orf47Q569G3 176 aa7.91□□□□□ -1.14
COL4A6-206ENST00000477085 Q5W150 140 aa7.9□□□□□ -1.14
COL4A6-206ENST00000477085 FP248Q71RG6 208 aaPredicted RBP7.9□□□□□ -1.14
COL4A6-206ENST00000477085 ZCCHC13Q8WW36 166 aaKnown RBP7.9□□□□□ -1.14
COL4A6-206ENST00000477085 TP53AIP1Q9HCN2 124 aa7.89□□□□□ -1.15
COL4A6-206ENST00000477085 PCLOQ9Y6V0 5065 aa7.89□□□□□ -1.15
COL4A6-206ENST00000477085 IGLV7-46A0A075B6I9 117 aa7.87□□□□□ -1.15
COL4A6-206ENST00000477085 RPS28P62857 69 aaKnown RBP7.87□□□□□ -1.15
COL4A6-206ENST00000477085 KRTAP13-3Q3SY46 172 aa7.87□□□□□ -1.15
COL4A6-206ENST00000477085 H0Y9P7 68 aa7.86□□□□□ -1.15
COL4A6-206ENST00000477085 J3QL48 77 aa7.86□□□□□ -1.15
COL4A6-206ENST00000477085 ATP5EP56381 51 aaPredicted RBP7.86□□□□□ -1.15
COL4A6-206ENST00000477085 TRAV22A0A0B4J277 110 aa7.84□□□□□ -1.15
COL4A6-206ENST00000477085 MP68P56378 58 aa7.84□□□□□ -1.15
COL4A6-206ENST00000477085 PRR4Q16378 134 aa7.84□□□□□ -1.15
COL4A6-206ENST00000477085 C20orf166-AS1Q96NR2 134 aa7.84□□□□□ -1.15
COL4A6-206ENST00000477085 A8MUU9 505 aa7.83□□□□□ -1.16
COL4A6-206ENST00000477085 LINC00208Q96KT6 92 aa7.82□□□□□ -1.16
COL4A6-206ENST00000477085 H3BPC8 53 aa7.81□□□□□ -1.16
COL4A6-206ENST00000477085 SERP1Q9Y6X1 66 aa7.8□□□□□ -1.16
COL4A6-206ENST00000477085 C1orf64Q8NEQ6 169 aa7.79□□□□□ -1.16
COL4A6-206ENST00000477085 LPAP08519 4548 aa7.79□□□□□ -1.16
COL4A6-206ENST00000477085 XP32Q5T750 250 aa7.77□□□□□ -1.17
COL4A6-206ENST00000477085 Q75L30 129 aa7.76□□□□□ -1.17
COL4A6-206ENST00000477085 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
COL4A6-206ENST00000477085 RPL37P61927 97 aaKnown RBP7.7□□□□□ -1.18
COL4A6-206ENST00000477085 CYP4F30PQ9H0H9 118 aa7.7□□□□□ -1.18
COL4A6-206ENST00000477085 HERC1Q15751 4861 aa7.7□□□□□ -1.18
COL4A6-206ENST00000477085 LRP2P98164 4655 aa7.69□□□□□ -1.18
COL4A6-206ENST00000477085 LOC101927531A0A1B0GV80 90 aa7.69□□□□□ -1.18
COL4A6-206ENST00000477085 IGKV2-30P06310 120 aa7.69□□□□□ -1.18
COL4A6-206ENST00000477085 PCOTHQ58A44 107 aa7.67□□□□□ -1.18
COL4A6-206ENST00000477085 SPANXA2-OT1Q8N9U9 137 aa7.67□□□□□ -1.18
COL4A6-206ENST00000477085 IGKV2D-30A0A075B6S6 120 aa7.64□□□□□ -1.19
COL4A6-206ENST00000477085 ATP11AUNQ6ZP68 121 aa7.62□□□□□ -1.19
COL4A6-206ENST00000477085 SMIM26A0A096LP01 95 aa7.61□□□□□ -1.19
COL4A6-206ENST00000477085 HMCN2Q8NDA2 5059 aa7.58□□□□□ -1.2
COL4A6-206ENST00000477085 HRES1P13985 223 aa7.58□□□□□ -1.2
COL4A6-206ENST00000477085 SPINK7P58062 85 aa7.58□□□□□ -1.2
COL4A6-206ENST00000477085 C7orf65Q6ZTY9 151 aa7.57□□□□□ -1.2
COL4A6-206ENST00000477085 C4orf26Q17RF5 130 aa7.51□□□□□ -1.21
COL4A6-206ENST00000477085 MUC17Q685J3 4493 aa7.47□□□□□ -1.21
COL4A6-206ENST00000477085 COA5Q86WW8 74 aa7.46□□□□□ -1.22
COL4A6-206ENST00000477085 MPLKIPQ8TAP9 179 aa7.45□□□□□ -1.22
COL4A6-206ENST00000477085 KRTAP3-1Q9BYR8 98 aa7.44□□□□□ -1.22
COL4A6-206ENST00000477085 KRTAP4-1Q9BYQ7 146 aa7.43□□□□□ -1.22
COL4A6-206ENST00000477085 SEC61BP60468 96 aaKnown RBP7.43□□□□□ -1.22
COL4A6-206ENST00000477085 DMAC1Q96GE9 116 aa7.43□□□□□ -1.22
COL4A6-206ENST00000477085 Q1T7F1 81 aa7.42□□□□□ -1.22
COL4A6-206ENST00000477085 COX6B2Q6YFQ2 88 aa7.36□□□□□ -1.23
COL4A6-206ENST00000477085 MUC2Q02817 5179 aa7.36□□□□□ -1.23
COL4A6-206ENST00000477085 ACYP2P14621 99 aa7.35□□□□□ -1.23
COL4A6-206ENST00000477085 V9GYY9 64 aa7.35□□□□□ -1.23
COL4A6-206ENST00000477085 A8MUN3 132 aa7.31□□□□□ -1.24
COL4A6-206ENST00000477085 KRTAP3-3Q9BYR6 98 aa7.31□□□□□ -1.24
COL4A6-206ENST00000477085 KRTAP3-2Q9BYR7 98 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms