RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 HRNRQ86YZ3 2850 aaPredicted RBP5.03□□□□□ -1.6
HPS4-209ENST00000466781 CYSTM1Q9H1C7 97 aa5.02□□□□□ -1.61
HPS4-209ENST00000466781 A8MUU9 505 aa5.02□□□□□ -1.61
HPS4-209ENST00000466781 RPS29P62273 56 aaKnown RBP5.02□□□□□ -1.61
HPS4-209ENST00000466781 C20orf166-AS1Q96NR2 134 aa5.01□□□□□ -1.61
HPS4-209ENST00000466781 MGAM2Q2M2H8 2515 aa5.01□□□□□ -1.61
HPS4-209ENST00000466781 UTP20O75691 2785 aaKnown RBP5.01□□□□□ -1.61
HPS4-209ENST00000466781 CFAP46Q8IYW2 2715 aa5.01□□□□□ -1.61
HPS4-209ENST00000466781 Q6ZRN7 208 aaPredicted RBP5□□□□□ -1.61
HPS4-209ENST00000466781 TACC2O95359 2948 aa5□□□□□ -1.61
HPS4-209ENST00000466781 KRTAP4-16G5E9R7 235 aaPredicted RBP4.97□□□□□ -1.61
HPS4-209ENST00000466781 ASB16-AS1Q495Z4 193 aa4.97□□□□□ -1.61
HPS4-209ENST00000466781 FLNBO75369 2602 aaKnown RBP4.97□□□□□ -1.61
HPS4-209ENST00000466781 KRTAP11-1Q8IUC1 163 aa4.96□□□□□ -1.62
HPS4-209ENST00000466781 KRTAP29-1A8MX34 341 aaPredicted RBP4.95□□□□□ -1.62
HPS4-209ENST00000466781 ATRQ13535 2644 aa4.94□□□□□ -1.62
HPS4-209ENST00000466781 MAST4O15021 2626 aa4.94□□□□□ -1.62
HPS4-209ENST00000466781 BAHCC1Q9P281 2608 aa4.94□□□□□ -1.62
HPS4-209ENST00000466781 NOTCH2NLQ7Z3S9 236 aa4.92□□□□□ -1.62
HPS4-209ENST00000466781 FBN2P35556 2912 aa4.91□□□□□ -1.62
HPS4-209ENST00000466781 IGSF10Q6WRI0 2623 aa4.9□□□□□ -1.62
HPS4-209ENST00000466781 A8MU10 97 aa4.9□□□□□ -1.63
HPS4-209ENST00000466781 TNP1P09430 55 aa4.9□□□□□ -1.63
HPS4-209ENST00000466781 STAB1Q9NY15 2570 aa4.89□□□□□ -1.63
HPS4-209ENST00000466781 TENM4Q6N022 2769 aa4.88□□□□□ -1.63
HPS4-209ENST00000466781 KRTAP25-1Q3LHN0 102 aa4.88□□□□□ -1.63
HPS4-209ENST00000466781 KRTAP7-1Q8IUC3 87 aa4.87□□□□□ -1.63
HPS4-209ENST00000466781 KRTAP16-1A8MUX0 517 aa4.87□□□□□ -1.63
HPS4-209ENST00000466781 KRTAP13-2Q52LG2 175 aa4.85□□□□□ -1.63
HPS4-209ENST00000466781 CMYA5Q8N3K9 4069 aa4.84□□□□□ -1.64
HPS4-209ENST00000466781 C10orf95Q9H7T3 257 aa4.82□□□□□ -1.64
HPS4-209ENST00000466781 ANK2Q01484 3957 aa4.82□□□□□ -1.64
HPS4-209ENST00000466781 ANK3Q12955 4377 aaKnown RBP4.82□□□□□ -1.64
HPS4-209ENST00000466781 KMT2BQ9UMN6 2715 aaPredicted RBP4.82□□□□□ -1.64
HPS4-209ENST00000466781 CENPEQ02224 2701 aa4.81□□□□□ -1.64
HPS4-209ENST00000466781 TEX15Q9BXT5 2789 aa4.79□□□□□ -1.64
HPS4-209ENST00000466781 CHD6Q8TD26 2715 aa4.78□□□□□ -1.64
HPS4-209ENST00000466781 KRTAP13-1Q8IUC0 172 aa4.77□□□□□ -1.65
HPS4-209ENST00000466781 KRTAP10-8P60410 259 aa4.76□□□□□ -1.65
HPS4-209ENST00000466781 DMBT1Q9UGM3 2413 aaPredicted RBP4.76□□□□□ -1.65
HPS4-209ENST00000466781 UBR5O95071 2799 aaPredicted RBP4.76□□□□□ -1.65
HPS4-209ENST00000466781 TEP1Q99973 2627 aaKnown RBP4.76□□□□□ -1.65
HPS4-209ENST00000466781 A6NN06 94 aa4.75□□□□□ -1.65
HPS4-209ENST00000466781 FLNCQ14315 2725 aa4.75□□□□□ -1.65
HPS4-209ENST00000466781 UNC79Q9P2D8 2635 aa4.74□□□□□ -1.65
HPS4-209ENST00000466781 A0A1B0GVY2 172 aa4.74□□□□□ -1.65
HPS4-209ENST00000466781 NDUFAF8A1L188 74 aa4.73□□□□□ -1.65
HPS4-209ENST00000466781 SETXQ7Z333 2677 aaKnown RBP4.71□□□□□ -1.65
HPS4-209ENST00000466781 ITPR2Q14571 2701 aa4.7□□□□□ -1.66
HPS4-209ENST00000466781 PP632Q6XCG6 107 aa4.7□□□□□ -1.66
HPS4-209ENST00000466781 GCN1Q92616 2671 aaKnown RBP4.7□□□□□ -1.66
HPS4-209ENST00000466781 PDZD2O15018 2839 aa4.7□□□□□ -1.66
HPS4-209ENST00000466781 STAB2Q8WWQ8 2551 aa4.68□□□□□ -1.66
HPS4-209ENST00000466781 NBEAL2Q6ZNJ1 2754 aa4.68□□□□□ -1.66
HPS4-209ENST00000466781 XP32Q5T750 250 aa4.68□□□□□ -1.66
HPS4-209ENST00000466781 MAP1AP78559 2803 aaPredicted RBP4.67□□□□□ -1.66
HPS4-209ENST00000466781 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
HPS4-209ENST00000466781 ZANQ9Y493 2812 aa4.66□□□□□ -1.66
HPS4-209ENST00000466781 CSMD3Q7Z407 3707 aa4.66□□□□□ -1.66
HPS4-209ENST00000466781 TRRAPQ9Y4A5 3859 aa4.66□□□□□ -1.66
HPS4-209ENST00000466781 MXRA5Q9NR99 2828 aa4.66□□□□□ -1.66
HPS4-209ENST00000466781 KRTAP10-10P60014 251 aa4.65□□□□□ -1.66
HPS4-209ENST00000466781 COL6A5A8TX70 2615 aa4.64□□□□□ -1.67
HPS4-209ENST00000466781 TPRXLQ17RH7 258 aa4.61□□□□□ -1.67
HPS4-209ENST00000466781 DNAH3Q8TD57 4116 aa4.61□□□□□ -1.67
HPS4-209ENST00000466781 KRTAP1-4P0C5Y4 121 aa4.61□□□□□ -1.67
HPS4-209ENST00000466781 OTOGQ6ZRI0 2925 aa4.6□□□□□ -1.67
HPS4-209ENST00000466781 APCP25054 2843 aa4.6□□□□□ -1.67
HPS4-209ENST00000466781 NIPBLQ6KC79 2804 aaeCLIP4.59□□□□□ -1.67
HPS4-209ENST00000466781 LYSTQ99698 3801 aa4.58□□□□□ -1.68
HPS4-209ENST00000466781 HIVEP1P15822 2718 aa4.57□□□□□ -1.68
HPS4-209ENST00000466781 NOTCH1P46531 2555 aa4.56□□□□□ -1.68
HPS4-209ENST00000466781 P0C880 135 aa4.53□□□□□ -1.68
HPS4-209ENST00000466781 NBEAL1Q6ZS30 2694 aa4.52□□□□□ -1.69
HPS4-209ENST00000466781 NF1P21359 2839 aa4.49□□□□□ -1.69
HPS4-209ENST00000466781 H0YAA0 97 aa4.48□□□□□ -1.69
HPS4-209ENST00000466781 DNAH7Q8WXX0 4024 aa4.48□□□□□ -1.69
HPS4-209ENST00000466781 KRTAP13-3Q3SY46 172 aa4.47□□□□□ -1.69
HPS4-209ENST00000466781 NSD1Q96L73 2696 aaPredicted RBP4.46□□□□□ -1.7
HPS4-209ENST00000466781 VWFP04275 2813 aa4.41□□□□□ -1.7
HPS4-209ENST00000466781 FBN1P35555 2871 aaKnown RBP4.4□□□□□ -1.7
HPS4-209ENST00000466781 DNAH1Q9P2D7 4330 aa4.39□□□□□ -1.71
HPS4-209ENST00000466781 TENM1Q9UKZ4 2725 aa4.38□□□□□ -1.71
HPS4-209ENST00000466781 DNHD1Q96M86 4753 aa4.37□□□□□ -1.71
HPS4-209ENST00000466781 PKD1L1Q8TDX9 2849 aa4.34□□□□□ -1.71
HPS4-209ENST00000466781 HUWE1Q7Z6Z7 4374 aaKnown RBP4.34□□□□□ -1.71
HPS4-209ENST00000466781 PRKDCP78527 4128 aaKnown RBP4.32□□□□□ -1.72
HPS4-209ENST00000466781 COL7A1Q02388 2944 aa4.32□□□□□ -1.72
HPS4-209ENST00000466781 ALMS1Q8TCU4 4167 aa4.32□□□□□ -1.72
HPS4-209ENST00000466781 DNAH9Q9NYC9 4486 aa4.31□□□□□ -1.72
HPS4-209ENST00000466781 DYNC2H1Q8NCM8 4307 aaKnown RBP4.29□□□□□ -1.72
HPS4-209ENST00000466781 KRTAP12-2P59991 146 aa4.27□□□□□ -1.73
HPS4-209ENST00000466781 TENM2Q9NT68 2774 aa4.27□□□□□ -1.73
HPS4-209ENST00000466781 KRTAP13-4Q3LI77 160 aa4.26□□□□□ -1.73
HPS4-209ENST00000466781 FRAS1Q86XX4 4008 aa4.25□□□□□ -1.73
HPS4-209ENST00000466781 DNAH10Q8IVF4 4471 aa4.23□□□□□ -1.73
HPS4-209ENST00000466781 KRTAP15-1Q3LI76 137 aa4.22□□□□□ -1.73
HPS4-209ENST00000466781 KMT2AQ03164 3969 aa4.2□□□□□ -1.74
HPS4-209ENST00000466781 STARD9Q9P2P6 4700 aa4.18□□□□□ -1.74
HPS4-209ENST00000466781 DNAH2Q9P225 4427 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms