RNA–Protein interactions for RNA: ENST00000464001.1

ITGB1-208, Transcript of integrin subunit beta 1, humanhuman

TSL 2

Gene ITGB1, Length 316 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-208ENST00000464001 USP24Q9UPU5 2620 aa0.53□□□□□ -2.32
ITGB1-208ENST00000464001 M0QY20 66 aa0.53□□□□□ -2.32
ITGB1-208ENST00000464001 SNRPGP62308 76 aaKnown RBP0.53□□□□□ -2.32
ITGB1-208ENST00000464001 A0A0C4DFX4 3053 aa0.52□□□□□ -2.33
ITGB1-208ENST00000464001 HUWE1Q7Z6Z7 4374 aaKnown RBP0.52□□□□□ -2.33
ITGB1-208ENST00000464001 MYCBP2O75592 4640 aa0.52□□□□□ -2.33
ITGB1-208ENST00000464001 H3BNG1 76 aa0.51□□□□□ -2.33
ITGB1-208ENST00000464001 LRP1Q07954 4544 aaKnown RBP0.51□□□□□ -2.33
ITGB1-208ENST00000464001 PDZD2O15018 2839 aa0.51□□□□□ -2.33
ITGB1-208ENST00000464001 SRRM2Q9UQ35 2752 aaKnown RBP0.5□□□□□ -2.33
ITGB1-208ENST00000464001 ACACAQ13085 2346 aa0.49□□□□□ -2.33
ITGB1-208ENST00000464001 HRNRQ86YZ3 2850 aaPredicted RBP0.49□□□□□ -2.33
ITGB1-208ENST00000464001 C9orf92A6NGG3 77 aa0.49□□□□□ -2.33
ITGB1-208ENST00000464001 SETXQ7Z333 2677 aaKnown RBP0.48□□□□□ -2.33
ITGB1-208ENST00000464001 COL6A5A8TX70 2615 aa0.48□□□□□ -2.33
ITGB1-208ENST00000464001 SPTBN4Q9H254 2564 aa0.48□□□□□ -2.33
ITGB1-208ENST00000464001 NSD1Q96L73 2696 aaPredicted RBP0.46□□□□□ -2.34
ITGB1-208ENST00000464001 A8MTW9 85 aa0.46□□□□□ -2.34
ITGB1-208ENST00000464001 SPRR2BP35325 72 aa0.46□□□□□ -2.34
ITGB1-208ENST00000464001 GCN1Q92616 2671 aaKnown RBP0.46□□□□□ -2.34
ITGB1-208ENST00000464001 VPS13BQ7Z7G8 4022 aa0.46□□□□□ -2.34
ITGB1-208ENST00000464001 STAB1Q9NY15 2570 aa0.46□□□□□ -2.34
ITGB1-208ENST00000464001 FLNBO75369 2602 aaKnown RBP0.45□□□□□ -2.34
ITGB1-208ENST00000464001 POLR2KP53803 58 aaKnown RBP0.45□□□□□ -2.34
ITGB1-208ENST00000464001 RPL39P62891 51 aaKnown RBP0.45□□□□□ -2.34
ITGB1-208ENST00000464001 CLPSL2Q6UWE3 100 aa0.45□□□□□ -2.34
ITGB1-208ENST00000464001 KMT2AQ03164 3969 aa0.44□□□□□ -2.34
ITGB1-208ENST00000464001 ZZEF1O43149 2961 aa0.44□□□□□ -2.34
ITGB1-208ENST00000464001 CACNA1AO00555 2505 aa0.43□□□□□ -2.34
ITGB1-208ENST00000464001 COL7A1Q02388 2944 aa0.43□□□□□ -2.34
ITGB1-208ENST00000464001 NF1P21359 2839 aa0.42□□□□□ -2.34
ITGB1-208ENST00000464001 M0QZ58 72 aa0.42□□□□□ -2.34
ITGB1-208ENST00000464001 DEFB110Q30KQ9 67 aa0.42□□□□□ -2.34
ITGB1-208ENST00000464001 IGSF10Q6WRI0 2623 aa0.42□□□□□ -2.34
ITGB1-208ENST00000464001 FLNCQ14315 2725 aa0.42□□□□□ -2.34
ITGB1-208ENST00000464001 TNP1P09430 55 aa0.41□□□□□ -2.34
ITGB1-208ENST00000464001 SETD2Q9BYW2 2564 aaPredicted RBP0.41□□□□□ -2.34
ITGB1-208ENST00000464001 DMBT1Q9UGM3 2413 aaPredicted RBP0.4□□□□□ -2.34
ITGB1-208ENST00000464001 MDN1Q9NU22 5596 aa0.4□□□□□ -2.34
ITGB1-208ENST00000464001 SACSQ9NZJ4 4579 aa0.4□□□□□ -2.34
ITGB1-208ENST00000464001 FAT4Q6V0I7 4981 aa0.4□□□□□ -2.35
ITGB1-208ENST00000464001 KRTAP6-2Q3LI66 62 aa0.4□□□□□ -2.35
ITGB1-208ENST00000464001 RPL39LQ96EH5 51 aaKnown RBP0.4□□□□□ -2.35
ITGB1-208ENST00000464001 SONP18583 2426 aaKnown RBP0.4□□□□□ -2.35
ITGB1-208ENST00000464001 MTORP42345 2549 aa0.4□□□□□ -2.35
ITGB1-208ENST00000464001 LPAP08519 4548 aa0.4□□□□□ -2.35
ITGB1-208ENST00000464001 CCDC168Q8NDH2 2452 aa0.39□□□□□ -2.35
ITGB1-208ENST00000464001 PHGR1C9JFL3 82 aa0.39□□□□□ -2.35
ITGB1-208ENST00000464001 MAST4O15021 2626 aa0.39□□□□□ -2.35
ITGB1-208ENST00000464001 DCHS2Q6V1P9 2916 aa0.39□□□□□ -2.35
ITGB1-208ENST00000464001 CUBNO60494 3623 aa0.39□□□□□ -2.35
ITGB1-208ENST00000464001 DMXL1Q9Y485 3027 aa0.38□□□□□ -2.35
ITGB1-208ENST00000464001 FAM186AA6NE01 2351 aa0.38□□□□□ -2.35
ITGB1-208ENST00000464001 LRRK2Q5S007 2527 aa0.38□□□□□ -2.35
ITGB1-208ENST00000464001 SPG11Q96JI7 2443 aa0.37□□□□□ -2.35
ITGB1-208ENST00000464001 HMCN2Q8NDA2 5059 aa0.36□□□□□ -2.35
ITGB1-208ENST00000464001 PKD1P98161 4303 aa0.36□□□□□ -2.35
ITGB1-208ENST00000464001 LEAP2Q969E1 77 aa0.36□□□□□ -2.35
ITGB1-208ENST00000464001 AHNAKQ09666 5890 aaKnown RBP0.35□□□□□ -2.35
ITGB1-208ENST00000464001 ACACBO00763 2458 aa0.35□□□□□ -2.35
ITGB1-208ENST00000464001 SPRR2AP35326 72 aa0.35□□□□□ -2.35
ITGB1-208ENST00000464001 ANKHD1Q8IWZ3 2542 aaKnown RBP0.35□□□□□ -2.35
ITGB1-208ENST00000464001 DNAH11Q96DT5 4516 aa0.35□□□□□ -2.35
ITGB1-208ENST00000464001 TACC2O95359 2948 aa0.34□□□□□ -2.36
ITGB1-208ENST00000464001 RIF1Q5UIP0 2472 aaKnown RBP0.34□□□□□ -2.36
ITGB1-208ENST00000464001 HECTD4Q9Y4D8 3996 aa0.34□□□□□ -2.36
ITGB1-208ENST00000464001 HSPG2P98160 4391 aa0.33□□□□□ -2.36
ITGB1-208ENST00000464001 SVEP1Q4LDE5 3571 aa0.33□□□□□ -2.36
ITGB1-208ENST00000464001 PKHD1L1Q86WI1 4243 aa0.33□□□□□ -2.36
ITGB1-208ENST00000464001 ANKRD11Q6UB99 2663 aaPredicted RBP0.33□□□□□ -2.36
ITGB1-208ENST00000464001 ZANQ9Y493 2812 aa0.32□□□□□ -2.36
ITGB1-208ENST00000464001 LRP1BQ9NZR2 4599 aa0.32□□□□□ -2.36
ITGB1-208ENST00000464001 MUC5BQ9HC84 5762 aaPredicted RBP0.32□□□□□ -2.36
ITGB1-208ENST00000464001 TOMM7Q9P0U1 55 aa0.32□□□□□ -2.36
ITGB1-208ENST00000464001 SPENQ96T58 3664 aaKnown RBP0.32□□□□□ -2.36
ITGB1-208ENST00000464001 CHD7Q9P2D1 2997 aa0.31□□□□□ -2.36
ITGB1-208ENST00000464001 NBEAL2Q6ZNJ1 2754 aa0.31□□□□□ -2.36
ITGB1-208ENST00000464001 DNAH3Q8TD57 4116 aa0.31□□□□□ -2.36
ITGB1-208ENST00000464001 TENM2Q9NT68 2774 aa0.3□□□□□ -2.36
ITGB1-208ENST00000464001 ANK3Q12955 4377 aaKnown RBP0.3□□□□□ -2.36
ITGB1-208ENST00000464001 COL6A3P12111 3177 aa0.3□□□□□ -2.36
ITGB1-208ENST00000464001 MT1AP04731 61 aa0.3□□□□□ -2.36
ITGB1-208ENST00000464001 FLGP20930 4061 aaPredicted RBP0.29□□□□□ -2.36
ITGB1-208ENST00000464001 SPRR2EP22531 72 aa0.29□□□□□ -2.36
ITGB1-208ENST00000464001 VPS13DQ5THJ4 4388 aa0.28□□□□□ -2.36
ITGB1-208ENST00000464001 COL12A1Q99715 3063 aa0.28□□□□□ -2.36
ITGB1-208ENST00000464001 RANBP2P49792 3224 aaKnown RBP0.27□□□□□ -2.37
ITGB1-208ENST00000464001 FASNP49327 2511 aaKnown RBP0.27□□□□□ -2.37
ITGB1-208ENST00000464001 MYO18BQ8IUG5 2567 aa0.27□□□□□ -2.37
ITGB1-208ENST00000464001 DNAH2Q9P225 4427 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 SPART-AS1P0CW21 52 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 KRTAP8-1Q8IUC2 63 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 ARHGAP5-AS1Q96IT6 56 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 MUC5ACP98088 5654 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 TLN2Q9Y4G6 2542 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 CELSR3Q9NYQ7 3312 aa0.26□□□□□ -2.37
ITGB1-208ENST00000464001 TEP1Q99973 2627 aaKnown RBP0.25□□□□□ -2.37
ITGB1-208ENST00000464001 SPRR2FQ96RM1 72 aa0.25□□□□□ -2.37
ITGB1-208ENST00000464001 TGP01266 2768 aa0.25□□□□□ -2.37
ITGB1-208ENST00000464001 FLNAP21333 2647 aaKnown RBP0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms