RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 IGHV6-1A0A0B4J1U7 121 aa8.87□□□□□ -0.99
LDLR-202ENST00000455727 KRTAP10-1P60331 282 aa8.87□□□□□ -0.99
LDLR-202ENST00000455727 SPANXA2-OT1Q8N9U9 137 aa8.87□□□□□ -0.99
LDLR-202ENST00000455727 FAT2Q9NYQ8 4349 aa8.85□□□□□ -0.99
LDLR-202ENST00000455727 MRPL34Q9BQ48 92 aaKnown RBP8.83□□□□□ -1
LDLR-202ENST00000455727 PRR4Q16378 134 aa8.82□□□□□ -1
LDLR-202ENST00000455727 HYDINQ4G0P3 5121 aa8.81□□□□□ -1
LDLR-202ENST00000455727 BRK1Q8WUW1 75 aa8.8□□□□□ -1
LDLR-202ENST00000455727 A0A087X002 238 aa8.8□□□□□ -1
LDLR-202ENST00000455727 Q1T7F1 81 aa8.8□□□□□ -1
LDLR-202ENST00000455727 NOTCH2NLQ7Z3S9 236 aa8.8□□□□□ -1
LDLR-202ENST00000455727 LRP1BQ9NZR2 4599 aa8.79□□□□□ -1
LDLR-202ENST00000455727 SPINK6Q6UWN8 80 aa8.78□□□□□ -1
LDLR-202ENST00000455727 NDUFS5O43920 106 aa8.77□□□□□ -1
LDLR-202ENST00000455727 KRTAP13-2Q52LG2 175 aa8.77□□□□□ -1.01
LDLR-202ENST00000455727 C8orf87E5RJ46 101 aa8.75□□□□□ -1.01
LDLR-202ENST00000455727 IGLV7-46A0A075B6I9 117 aa8.74□□□□□ -1.01
LDLR-202ENST00000455727 KRTAP1-4P0C5Y4 121 aa8.73□□□□□ -1.01
LDLR-202ENST00000455727 VPS13BQ7Z7G8 4022 aa8.7□□□□□ -1.02
LDLR-202ENST00000455727 C1orf195Q5TG92 126 aa8.69□□□□□ -1.02
LDLR-202ENST00000455727 KRTAP13-3Q3SY46 172 aa8.68□□□□□ -1.02
LDLR-202ENST00000455727 PCOTHQ58A44 107 aa8.67□□□□□ -1.02
LDLR-202ENST00000455727 LOC101927531A0A1B0GV80 90 aa8.66□□□□□ -1.02
LDLR-202ENST00000455727 PSPHP1O15172 72 aa8.66□□□□□ -1.02
LDLR-202ENST00000455727 LINC00313P59037 77 aa8.66□□□□□ -1.02
LDLR-202ENST00000455727 LIMD2Q9BT23 127 aa8.66□□□□□ -1.02
LDLR-202ENST00000455727 V9GYY9 64 aa8.66□□□□□ -1.02
LDLR-202ENST00000455727 Q5W150 140 aa8.64□□□□□ -1.03
LDLR-202ENST00000455727 SACSQ9NZJ4 4579 aa8.64□□□□□ -1.03
LDLR-202ENST00000455727 PLA2G1BP04054 148 aaKnown RBP8.64□□□□□ -1.03
LDLR-202ENST00000455727 Q8N9P0 234 aaPredicted RBP8.63□□□□□ -1.03
LDLR-202ENST00000455727 A8MUN3 132 aa8.6□□□□□ -1.03
LDLR-202ENST00000455727 C4orf48Q5BLP8 95 aa8.6□□□□□ -1.03
LDLR-202ENST00000455727 COA5Q86WW8 74 aa8.6□□□□□ -1.03
LDLR-202ENST00000455727 TYMSOSQ8TAI1 123 aa8.6□□□□□ -1.03
LDLR-202ENST00000455727 SPINK1P00995 79 aa8.59□□□□□ -1.03
LDLR-202ENST00000455727 PKHD1P08F94 4074 aa8.59□□□□□ -1.03
LDLR-202ENST00000455727 FAM229AH3BQW9 127 aa8.58□□□□□ -1.04
LDLR-202ENST00000455727 KRTAP16-1A8MUX0 517 aa8.57□□□□□ -1.04
LDLR-202ENST00000455727 Q5VV11 94 aa8.55□□□□□ -1.04
LDLR-202ENST00000455727 RPS29P62273 56 aaKnown RBP8.54□□□□□ -1.04
LDLR-202ENST00000455727 A0A1B0GVY2 172 aa8.53□□□□□ -1.04
LDLR-202ENST00000455727 HRES1P13985 223 aa8.51□□□□□ -1.05
LDLR-202ENST00000455727 SPAG11AQ6PDA7 123 aa8.51□□□□□ -1.05
LDLR-202ENST00000455727 DYNC1H1Q14204 4646 aaKnown RBP8.5□□□□□ -1.05
LDLR-202ENST00000455727 PRR15LQ9BU68 103 aa8.5□□□□□ -1.05
LDLR-202ENST00000455727 PRR26Q8N8Z3 221 aa8.49□□□□□ -1.05
LDLR-202ENST00000455727 LINC00304Q8N9R0 145 aa8.49□□□□□ -1.05
LDLR-202ENST00000455727 CHKB-CPT1BH3BT56 60 aa8.48□□□□□ -1.05
LDLR-202ENST00000455727 IGKV2-30P06310 120 aa8.48□□□□□ -1.05
LDLR-202ENST00000455727 SMR3BP02814 79 aaPredicted RBP8.46□□□□□ -1.06
LDLR-202ENST00000455727 ACYP2P14621 99 aa8.44□□□□□ -1.06
LDLR-202ENST00000455727 Q75L30 129 aa8.44□□□□□ -1.06
LDLR-202ENST00000455727 KRTAP10-4P60372 401 aaPredicted RBP8.43□□□□□ -1.06
LDLR-202ENST00000455727 RETNLBQ9BQ08 111 aa8.43□□□□□ -1.06
LDLR-202ENST00000455727 DMAC1Q96GE9 116 aa8.42□□□□□ -1.06
LDLR-202ENST00000455727 APOBP04114 4563 aaKnown RBP8.42□□□□□ -1.06
LDLR-202ENST00000455727 A8MU10 97 aa8.42□□□□□ -1.06
LDLR-202ENST00000455727 LINC01558Q9Y6Z2 57 aa8.42□□□□□ -1.06
LDLR-202ENST00000455727 PKHD1L1Q86WI1 4243 aa8.37□□□□□ -1.07
LDLR-202ENST00000455727 A6NED7 52 aa8.36□□□□□ -1.07
LDLR-202ENST00000455727 PMAIP1Q13794 54 aa8.36□□□□□ -1.07
LDLR-202ENST00000455727 RYR2Q92736 4967 aa8.36□□□□□ -1.07
LDLR-202ENST00000455727 FAT1Q14517 4588 aa8.35□□□□□ -1.07
LDLR-202ENST00000455727 LCA10Q71F78 164 aa8.35□□□□□ -1.07
LDLR-202ENST00000455727 IGKV2D-30A0A075B6S6 120 aa8.33□□□□□ -1.08
LDLR-202ENST00000455727 ATP11AUNQ6ZP68 121 aa8.29□□□□□ -1.08
LDLR-202ENST00000455727 CDC42SE1Q9NRR8 79 aa8.29□□□□□ -1.08
LDLR-202ENST00000455727 SPTSSBQ8NFR3 76 aa8.28□□□□□ -1.08
LDLR-202ENST00000455727 C7orf65Q6ZTY9 151 aa8.27□□□□□ -1.09
LDLR-202ENST00000455727 C20orf166-AS1Q96NR2 134 aa8.26□□□□□ -1.09
LDLR-202ENST00000455727 A8MUU9 505 aa8.26□□□□□ -1.09
LDLR-202ENST00000455727 KMT2CQ8NEZ4 4911 aaKnown RBP8.25□□□□□ -1.09
LDLR-202ENST00000455727 SPINK7P58062 85 aa8.23□□□□□ -1.09
LDLR-202ENST00000455727 SEC61GP60059 68 aa8.23□□□□□ -1.09
LDLR-202ENST00000455727 C9orf92A6NGG3 77 aa8.2□□□□□ -1.1
LDLR-202ENST00000455727 A6NN06 94 aa8.17□□□□□ -1.1
LDLR-202ENST00000455727 KTN1-AS1Q86SY8 53 aa8.15□□□□□ -1.1
LDLR-202ENST00000455727 FLG2Q5D862 2391 aaPredicted RBP8.15□□□□□ -1.1
LDLR-202ENST00000455727 KRTAP10-8P60410 259 aa8.13□□□□□ -1.11
LDLR-202ENST00000455727 A0A1B0GU69 56 aa8.12□□□□□ -1.11
LDLR-202ENST00000455727 Q8N1X5 172 aa8.12□□□□□ -1.11
LDLR-202ENST00000455727 Q5VSD8 79 aa8.1□□□□□ -1.11
LDLR-202ENST00000455727 TNXBP22105 4242 aa8.09□□□□□ -1.11
LDLR-202ENST00000455727 HSPG2P98160 4391 aa8.09□□□□□ -1.11
LDLR-202ENST00000455727 FAT3Q8TDW7 4589 aa8.06□□□□□ -1.12
LDLR-202ENST00000455727 LRP1Q07954 4544 aaKnown RBP8.03□□□□□ -1.12
LDLR-202ENST00000455727 KRTAP3-1Q9BYR8 98 aa8.01□□□□□ -1.13
LDLR-202ENST00000455727 RYR3Q15413 4870 aa7.99□□□□□ -1.13
LDLR-202ENST00000455727 RYR1P21817 5038 aa7.99□□□□□ -1.13
LDLR-202ENST00000455727 SPATA8Q6RVD6 105 aa7.98□□□□□ -1.13
LDLR-202ENST00000455727 UQCR11O14957 56 aa7.97□□□□□ -1.13
LDLR-202ENST00000455727 RBM12B-AS1Q9P1G2 102 aa7.96□□□□□ -1.14
LDLR-202ENST00000455727 COX6B2Q6YFQ2 88 aa7.94□□□□□ -1.14
LDLR-202ENST00000455727 KRTAP17-1Q9BYP8 105 aa7.93□□□□□ -1.14
LDLR-202ENST00000455727 MIR22HGQ0VDD5 57 aa7.92□□□□□ -1.14
LDLR-202ENST00000455727 RPL37P61927 97 aaKnown RBP7.92□□□□□ -1.14
LDLR-202ENST00000455727 DMBT1Q9UGM3 2413 aaPredicted RBP7.9□□□□□ -1.15
LDLR-202ENST00000455727 MT1HL1P0DM35 61 aa7.88□□□□□ -1.15
LDLR-202ENST00000455727 XP32Q5T750 250 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 136.7 ms