RNA–Protein interactions for RNA: ENST00000444475.5

UBR3-206, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 5

Gene UBR3, Length 3,821 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-206ENST00000444475 CSMD2Q7Z408 3487 aa1.84□□□□□ -2.11
UBR3-206ENST00000444475 ZNF469Q96JG9 3925 aaPredicted RBP1.84□□□□□ -2.11
UBR3-206ENST00000444475 SPTY2D1-AS1A0A0U1RR47 76 aa1.84□□□□□ -2.11
UBR3-206ENST00000444475 UNQ6190/PRO20217Q6UXQ8 127 aa1.84□□□□□ -2.12
UBR3-206ENST00000444475 CMYA5Q8N3K9 4069 aa1.84□□□□□ -2.12
UBR3-206ENST00000444475 VPS13CQ709C8 3753 aa1.83□□□□□ -2.12
UBR3-206ENST00000444475 HECTD4Q9Y4D8 3996 aa1.83□□□□□ -2.12
UBR3-206ENST00000444475 PRB2P02812 416 aaPredicted RBP1.83□□□□□ -2.12
UBR3-206ENST00000444475 MAP1AP78559 2803 aaPredicted RBP1.83□□□□□ -2.12
UBR3-206ENST00000444475 CUBNO60494 3623 aa1.83□□□□□ -2.12
UBR3-206ENST00000444475 SPRR5A0A1B0GTR4 108 aa1.82□□□□□ -2.12
UBR3-206ENST00000444475 RPL37P61927 97 aaKnown RBP1.82□□□□□ -2.12
UBR3-206ENST00000444475 TMEM167BQ9NRX6 74 aa1.82□□□□□ -2.12
UBR3-206ENST00000444475 CNFNQ9BYD5 112 aa1.82□□□□□ -2.12
UBR3-206ENST00000444475 CDKN2A-AS1Q9UH64 79 aa1.81□□□□□ -2.12
UBR3-206ENST00000444475 PKDREJQ9NTG1 2253 aa1.81□□□□□ -2.12
UBR3-206ENST00000444475 IGKV2-24A0A0C4DH68 120 aa1.81□□□□□ -2.12
UBR3-206ENST00000444475 LINC00158P58513 81 aa1.81□□□□□ -2.12
UBR3-206ENST00000444475 ZANQ9Y493 2812 aa1.81□□□□□ -2.12
UBR3-206ENST00000444475 Q8IZM0 81 aa1.8□□□□□ -2.12
UBR3-206ENST00000444475 LAMA1P25391 3075 aa1.8□□□□□ -2.12
UBR3-206ENST00000444475 UBR4Q5T4S7 5183 aa1.79□□□□□ -2.12
UBR3-206ENST00000444475 LYNX1G3V0Z9 82 aa1.79□□□□□ -2.12
UBR3-206ENST00000444475 DEFB133Q30KQ1 61 aa1.79□□□□□ -2.12
UBR3-206ENST00000444475 LINC00308Q8TCZ7 52 aa1.79□□□□□ -2.12
UBR3-206ENST00000444475 I3L2K1 104 aa1.78□□□□□ -2.12
UBR3-206ENST00000444475 GPR98Q8WXG9 6306 aa1.78□□□□□ -2.12
UBR3-206ENST00000444475 KRTAP5-2Q701N4 177 aa1.78□□□□□ -2.12
UBR3-206ENST00000444475 LYSTQ99698 3801 aa1.78□□□□□ -2.12
UBR3-206ENST00000444475 CRIPTQ9P021 101 aa1.78□□□□□ -2.12
UBR3-206ENST00000444475 LINC00575Q6W349 94 aa1.78□□□□□ -2.13
UBR3-206ENST00000444475 DCHS2Q6V1P9 2916 aa1.77□□□□□ -2.13
UBR3-206ENST00000444475 WNK1Q9H4A3 2382 aa1.77□□□□□ -2.13
UBR3-206ENST00000444475 LYNX1P0DP58 116 aa1.77□□□□□ -2.13
UBR3-206ENST00000444475 RPL38P63173 70 aaKnown RBP1.77□□□□□ -2.13
UBR3-206ENST00000444475 MRPL33O75394 65 aaKnown RBP1.77□□□□□ -2.13
UBR3-206ENST00000444475 VWFP04275 2813 aa1.77□□□□□ -2.13
UBR3-206ENST00000444475 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.77□□□□□ -2.135e-7■■■■■ 35
UBR3-206ENST00000444475 H0YAA0 97 aa1.77□□□□□ -2.13
UBR3-206ENST00000444475 ABCA13Q86UQ4 5058 aa1.77□□□□□ -2.13
UBR3-206ENST00000444475 SPINK13Q1W4C9 94 aa1.76□□□□□ -2.13
UBR3-206ENST00000444475 SMIM2Q9BVW6 85 aa1.76□□□□□ -2.13
UBR3-206ENST00000444475 USF3Q68DE3 2245 aa1.76□□□□□ -2.13
UBR3-206ENST00000444475 DNAH7Q8WXX0 4024 aa1.76□□□□□ -2.13
UBR3-206ENST00000444475 PCOTHQ58A44 107 aa1.76□□□□□ -2.13
UBR3-206ENST00000444475 SONP18583 2426 aaKnown RBP1.76□□□□□ -2.13
UBR3-206ENST00000444475 NDUFA1O15239 70 aa1.75□□□□□ -2.13
UBR3-206ENST00000444475 DNAH9Q9NYC9 4486 aa1.75□□□□□ -2.13
UBR3-206ENST00000444475 KMT2AQ03164 3969 aa1.74□□□□□ -2.13
UBR3-206ENST00000444475 K7EQZ3 153 aa1.74□□□□□ -2.13
UBR3-206ENST00000444475 TACC2O95359 2948 aa1.74□□□□□ -2.13
UBR3-206ENST00000444475 DYNC1H1Q14204 4646 aaKnown RBP1.74□□□□□ -2.13
UBR3-206ENST00000444475 DNAH10Q8IVF4 4471 aa1.73□□□□□ -2.13
UBR3-206ENST00000444475 DNAH6Q9C0G6 4158 aa1.73□□□□□ -2.13
UBR3-206ENST00000444475 STATHP02808 62 aa1.73□□□□□ -2.13
UBR3-206ENST00000444475 K7EIL1 84 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 GAS8-AS1O95177 125 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 LRP1BQ9NZR2 4599 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 COX6B2Q6YFQ2 88 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 KRTAP1-5Q9BYS1 174 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 TENM2Q9NT68 2774 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 LCE3CQ5T5A8 94 aa1.72□□□□□ -2.13
UBR3-206ENST00000444475 MRPL34Q9BQ48 92 aaKnown RBP1.72□□□□□ -2.13
UBR3-206ENST00000444475 HUWE1Q7Z6Z7 4374 aaKnown RBP1.71□□□□□ -2.13
UBR3-206ENST00000444475 LCE1EQ5T753 118 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 FAT2Q9NYQ8 4349 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 TENM3Q9P273 2699 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 DEFB108AA8MXU0 73 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 KRTAP6-3Q3LI67 103 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 DNAH11Q96DT5 4516 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 HERC1Q15751 4861 aa1.71□□□□□ -2.14
UBR3-206ENST00000444475 UBE2DNLQ8IWF7 75 aa1.7□□□□□ -2.14
UBR3-206ENST00000444475 FAT3Q8TDW7 4589 aa1.7□□□□□ -2.14
UBR3-206ENST00000444475 KRTAP10-12P60413 245 aa1.69□□□□□ -2.14
UBR3-206ENST00000444475 Q6ZSA8 131 aa1.69□□□□□ -2.14
UBR3-206ENST00000444475 COX6A2Q02221 97 aa1.69□□□□□ -2.14
UBR3-206ENST00000444475 LELP1Q5T871 98 aa1.69□□□□□ -2.14
UBR3-206ENST00000444475 C10orf95Q9H7T3 257 aa1.69□□□□□ -2.14
UBR3-206ENST00000444475 PLECQ15149 4684 aaKnown RBP1.69□□□□□ -2.14
UBR3-206ENST00000444475 DNAH17Q9UFH2 4485 aa1.68□□□□□ -2.14
UBR3-206ENST00000444475 KRTAP5-8O75690 187 aa1.68□□□□□ -2.14
UBR3-206ENST00000444475 NOTCH3Q9UM47 2321 aa1.68□□□□□ -2.14
UBR3-206ENST00000444475 PKHD1P08F94 4074 aa1.68□□□□□ -2.14
UBR3-206ENST00000444475 FAT4Q6V0I7 4981 aa1.68□□□□□ -2.14
UBR3-206ENST00000444475 TP53AIP1Q9HCN2 124 aa1.68□□□□□ -2.14
UBR3-206ENST00000444475 KRTAP13-3Q3SY46 172 aa1.67□□□□□ -2.14
UBR3-206ENST00000444475 CRCT1Q9UGL9 99 aa1.67□□□□□ -2.14
UBR3-206ENST00000444475 IAPPP10997 89 aa1.67□□□□□ -2.14
UBR3-206ENST00000444475 KRTAP10-10P60014 251 aa1.67□□□□□ -2.14
UBR3-206ENST00000444475 PRB3Q04118 309 aaPredicted RBP1.67□□□□□ -2.14
UBR3-206ENST00000444475 ARHGAP5-AS1Q96IT6 56 aa1.66□□□□□ -2.14
UBR3-206ENST00000444475 KNL1Q8NG31 2342 aa1.66□□□□□ -2.14
UBR3-206ENST00000444475 SVEP1Q4LDE5 3571 aa1.66□□□□□ -2.14
UBR3-206ENST00000444475 HRNRQ86YZ3 2850 aaPredicted RBP1.66□□□□□ -2.14
UBR3-206ENST00000444475 ROS1P08922 2347 aa1.65□□□□□ -2.14
UBR3-206ENST00000444475 DNAH2Q9P225 4427 aa1.65□□□□□ -2.14
UBR3-206ENST00000444475 RPS27LQ71UM5 84 aaKnown RBP1.65□□□□□ -2.15
UBR3-206ENST00000444475 VPS13BQ7Z7G8 4022 aa1.65□□□□□ -2.15
UBR3-206ENST00000444475 SORL1Q92673 2214 aa1.64□□□□□ -2.15
UBR3-206ENST00000444475 HMCN2Q8NDA2 5059 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms