RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 LINC00959A0A1B0GUT2 108 aa0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 LYNX1G3V0Z9 82 aa0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 M0R2T5 61 aa0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 TP53AIP1Q9HCN2 124 aa0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 ROS1P08922 2347 aa0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 KRTAP13-1Q8IUC0 172 aa0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 LAMA2P24043 3122 aaKnown RBP0.97□□□□□ -2.25
CCDC88A-208ENST00000444458 CHD9Q3L8U1 2897 aa0.96□□□□□ -2.25
CCDC88A-208ENST00000444458 AKAP9Q99996 3911 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 BPTFQ12830 3046 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 LCE3DQ9BYE3 92 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 COX6A2Q02221 97 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 NCBP2-AS2Q69YL0 99 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 HUWE1Q7Z6Z7 4374 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 UNC80Q8N2C7 3258 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 K7EIL1 84 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 MRPL33O75394 65 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 PRO0255Q9UI72 69 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 MUC5ACP98088 5654 aa0.96□□□□□ -2.26
CCDC88A-208ENST00000444458 OTOGQ6ZRI0 2925 aa0.95□□□□□ -2.26
CCDC88A-208ENST00000444458 CPSF4LA6NMK7 179 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-208ENST00000444458 SERF2P84101 59 aa0.95□□□□□ -2.26
CCDC88A-208ENST00000444458 NMES1Q9C002 83 aa0.95□□□□□ -2.26
CCDC88A-208ENST00000444458 EYSQ5T1H1 3165 aa0.95□□□□□ -2.26
CCDC88A-208ENST00000444458 MKI67P46013 3256 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-208ENST00000444458 PRH1P02810 166 aa0.94□□□□□ -2.26
CCDC88A-208ENST00000444458 COX14Q96I36 57 aa0.94□□□□□ -2.26
CCDC88A-208ENST00000444458 CENPFP49454 3210 aa0.94□□□□□ -2.26
CCDC88A-208ENST00000444458 CNFNQ9BYD5 112 aa0.94□□□□□ -2.26
CCDC88A-208ENST00000444458 TNCP24821 2201 aa0.94□□□□□ -2.26
CCDC88A-208ENST00000444458 SNRPGP15A8MWD9 76 aa0.94□□□□□ -2.26
CCDC88A-208ENST00000444458 RANBP2P49792 3224 aaKnown RBP0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 CFAP47Q6ZTR5 3102 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 KMT2DO14686 5537 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 SORL1Q92673 2214 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 CELSR2Q9HCU4 2923 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 HMCN2Q8NDA2 5059 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 Q8IZM0 81 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 DEFB106AQ8N104 65 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 HTTP42858 3142 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 CD52P31358 61 aa0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 SMG1Q96Q15 3661 aaKnown RBP0.93□□□□□ -2.26
CCDC88A-208ENST00000444458 ETDCA0A1B0GVM5 59 aa0.92□□□□□ -2.26
CCDC88A-208ENST00000444458 KRTAP12-3P60328 96 aa0.92□□□□□ -2.26
CCDC88A-208ENST00000444458 PRUNE2Q8WUY3 3088 aa0.92□□□□□ -2.26
CCDC88A-208ENST00000444458 CCL22O00626 93 aa0.92□□□□□ -2.26
CCDC88A-208ENST00000444458 LRP1Q07954 4544 aaKnown RBP0.92□□□□□ -2.26
CCDC88A-208ENST00000444458 BRCA2P51587 3418 aa0.91□□□□□ -2.26
CCDC88A-208ENST00000444458 DEFB109BQ30KR1 87 aa0.91□□□□□ -2.26
CCDC88A-208ENST00000444458 WDFY4Q6ZS81 3184 aa0.91□□□□□ -2.26
CCDC88A-208ENST00000444458 CFAP54Q96N23 3096 aa0.91□□□□□ -2.26
CCDC88A-208ENST00000444458 M0R1W7 72 aa0.91□□□□□ -2.26
CCDC88A-208ENST00000444458 LAMA3Q16787 3333 aa0.9□□□□□ -2.26
CCDC88A-208ENST00000444458 C5orf42Q9H799 3197 aa0.9□□□□□ -2.26
CCDC88A-208ENST00000444458 KRTAP5-10Q6L8G5 202 aa0.9□□□□□ -2.26
CCDC88A-208ENST00000444458 MRPL34Q9BQ48 92 aaKnown RBP0.9□□□□□ -2.26
CCDC88A-208ENST00000444458 MDN1Q9NU22 5596 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 APCP25054 2843 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 DNAH12Q6ZR08 3092 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 WDR87Q6ZQQ6 2873 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 SNRPGP62308 76 aaKnown RBP0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 HSPG2P98160 4391 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 VPS13DQ5THJ4 4388 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 K7EMI3 77 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 K7EQZ3 153 aa0.9□□□□□ -2.27
CCDC88A-208ENST00000444458 TFF3Q07654 80 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 MUC3AQ02505 3323 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 SPRR2DP22532 72 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 KRTAP12-4P60329 112 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 TGP01266 2768 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 I3L2K1 104 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 DEFB114Q30KQ6 69 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 TOMM5Q8N4H5 51 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 KCNQ1DNQ9H478 68 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 APLNQ9ULZ1 77 aa0.89□□□□□ -2.27
CCDC88A-208ENST00000444458 C10orf95Q9H7T3 257 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 SPRR2EP22531 72 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 SPRR2BP35325 72 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 SPRR2AP35326 72 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 CDKN2A-AS1Q9UH64 79 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 U3KQA8 63 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 MEGF8Q7Z7M0 2845 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 FAT2Q9NYQ8 4349 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 CENPEQ02224 2701 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 DEFB131BA0A096LNP1 70 aa0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 TIMM8BQ9Y5J9 83 aaPredicted RBP0.88□□□□□ -2.27
CCDC88A-208ENST00000444458 PLNP26678 52 aa0.87□□□□□ -2.27
CCDC88A-208ENST00000444458 CMC2Q9NRP2 79 aa0.87□□□□□ -2.27
CCDC88A-208ENST00000444458 ASPMQ8IZT6 3477 aa0.87□□□□□ -2.27
CCDC88A-208ENST00000444458 KLK9Q2XQG4 91 aa0.87□□□□□ -2.27
CCDC88A-208ENST00000444458 DCHS1Q96JQ0 3298 aa0.87□□□□□ -2.27
CCDC88A-208ENST00000444458 CHD7Q9P2D1 2997 aa0.86□□□□□ -2.27
CCDC88A-208ENST00000444458 DSPP15924 2871 aaKnown RBP0.86□□□□□ -2.27
CCDC88A-208ENST00000444458 A0A0D9SG42 100 aa0.86□□□□□ -2.27
CCDC88A-208ENST00000444458 NDUFA3O95167 84 aa0.86□□□□□ -2.27
CCDC88A-208ENST00000444458 COX6B2Q6YFQ2 88 aa0.86□□□□□ -2.27
CCDC88A-208ENST00000444458 MYCBP2O75592 4640 aa0.86□□□□□ -2.27
CCDC88A-208ENST00000444458 XIRP2A4UGR9 3374 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 LINC00158P58513 81 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 LYSTQ99698 3801 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms