RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 DNAH8Q96JB1 4490 aa6.12□□□□□ -1.43
CD44-210ENST00000434472 Q6ZSA8 131 aa6.12□□□□□ -1.43
CD44-210ENST00000434472 SPINK6Q6UWN8 80 aa6.11□□□□□ -1.43
CD44-210ENST00000434472 ALMS1Q8TCU4 4167 aa6.11□□□□□ -1.43
CD44-210ENST00000434472 LOC101927531A0A1B0GV80 90 aa6.1□□□□□ -1.43
CD44-210ENST00000434472 PCOTHQ58A44 107 aa6.1□□□□□ -1.43
CD44-210ENST00000434472 BRK1Q8WUW1 75 aa6.1□□□□□ -1.43
CD44-210ENST00000434472 MEGF8Q7Z7M0 2845 aa6.09□□□□□ -1.43
CD44-210ENST00000434472 A0A087X002 238 aa6.09□□□□□ -1.43
CD44-210ENST00000434472 NOTCH2NLQ7Z3S9 236 aa6.09□□□□□ -1.43
CD44-210ENST00000434472 LIMD2Q9BT23 127 aa6.09□□□□□ -1.43
CD44-210ENST00000434472 COA5Q86WW8 74 aa6.08□□□□□ -1.44
CD44-210ENST00000434472 KRTAP10-1P60331 282 aa6.07□□□□□ -1.44
CD44-210ENST00000434472 LINC00313P59037 77 aa6.06□□□□□ -1.44
CD44-210ENST00000434472 Q8N9P0 234 aaPredicted RBP6.05□□□□□ -1.44
CD44-210ENST00000434472 PSPHP1O15172 72 aa6.04□□□□□ -1.44
CD44-210ENST00000434472 KRTAP13-3Q3SY46 172 aa6.04□□□□□ -1.44
CD44-210ENST00000434472 KRTAP13-2Q52LG2 175 aa6.04□□□□□ -1.44
CD44-210ENST00000434472 KMT2AQ03164 3969 aa6.03□□□□□ -1.44
CD44-210ENST00000434472 DNAH11Q96DT5 4516 aa6.03□□□□□ -1.44
CD44-210ENST00000434472 A8MUN3 132 aa6.02□□□□□ -1.45
CD44-210ENST00000434472 FAM229AH3BQW9 127 aa6.02□□□□□ -1.45
CD44-210ENST00000434472 Q5W150 140 aa6□□□□□ -1.45
CD44-210ENST00000434472 TGP01266 2768 aa6□□□□□ -1.45
CD44-210ENST00000434472 KRTAP1-4P0C5Y4 121 aa5.99□□□□□ -1.45
CD44-210ENST00000434472 C4orf48Q5BLP8 95 aa5.99□□□□□ -1.45
CD44-210ENST00000434472 Q5VV11 94 aa5.99□□□□□ -1.45
CD44-210ENST00000434472 DNAH5Q8TE73 4624 aa5.99□□□□□ -1.45
CD44-210ENST00000434472 PRR15LQ9BU68 103 aa5.99□□□□□ -1.45
CD44-210ENST00000434472 HRES1P13985 223 aa5.98□□□□□ -1.45
CD44-210ENST00000434472 LINC01558Q9Y6Z2 57 aa5.97□□□□□ -1.45
CD44-210ENST00000434472 FRAS1Q86XX4 4008 aa5.97□□□□□ -1.45
CD44-210ENST00000434472 SPINK1P00995 79 aa5.96□□□□□ -1.45
CD44-210ENST00000434472 Q75L30 129 aa5.96□□□□□ -1.45
CD44-210ENST00000434472 TYMSOSQ8TAI1 123 aa5.96□□□□□ -1.45
CD44-210ENST00000434472 CHKB-CPT1BH3BT56 60 aa5.96□□□□□ -1.46
CD44-210ENST00000434472 PLA2G1BP04054 148 aaKnown RBP5.96□□□□□ -1.46
CD44-210ENST00000434472 ACYP2P14621 99 aa5.96□□□□□ -1.46
CD44-210ENST00000434472 KRTAP16-1A8MUX0 517 aa5.95□□□□□ -1.46
CD44-210ENST00000434472 IGKV2-30P06310 120 aa5.95□□□□□ -1.46
CD44-210ENST00000434472 RPS29P62273 56 aaKnown RBP5.93□□□□□ -1.46
CD44-210ENST00000434472 PKD1P98161 4303 aa5.92□□□□□ -1.46
CD44-210ENST00000434472 LCE2DQ5TA82 110 aaPredicted RBP5.92□□□□□ -1.46
CD44-210ENST00000434472 SPAG11AQ6PDA7 123 aa5.92□□□□□ -1.46
CD44-210ENST00000434472 DMAC1Q96GE9 116 aa5.91□□□□□ -1.46
CD44-210ENST00000434472 FAT2Q9NYQ8 4349 aa5.9□□□□□ -1.47
CD44-210ENST00000434472 LINC00304Q8N9R0 145 aa5.88□□□□□ -1.47
CD44-210ENST00000434472 RETNLBQ9BQ08 111 aa5.88□□□□□ -1.47
CD44-210ENST00000434472 LRP1BQ9NZR2 4599 aa5.88□□□□□ -1.47
CD44-210ENST00000434472 A6NED7 52 aa5.88□□□□□ -1.47
CD44-210ENST00000434472 PRR26Q8N8Z3 221 aa5.85□□□□□ -1.47
CD44-210ENST00000434472 CDC42SE1Q9NRR8 79 aa5.84□□□□□ -1.47
CD44-210ENST00000434472 SACSQ9NZJ4 4579 aa5.82□□□□□ -1.48
CD44-210ENST00000434472 IGKV2D-30A0A075B6S6 120 aa5.82□□□□□ -1.48
CD44-210ENST00000434472 ATP11AUNQ6ZP68 121 aa5.82□□□□□ -1.48
CD44-210ENST00000434472 HYDINQ4G0P3 5121 aa5.82□□□□□ -1.48
CD44-210ENST00000434472 A0A1B0GVY2 172 aa5.81□□□□□ -1.48
CD44-210ENST00000434472 LCA10Q71F78 164 aa5.81□□□□□ -1.48
CD44-210ENST00000434472 C7orf65Q6ZTY9 151 aa5.79□□□□□ -1.48
CD44-210ENST00000434472 PMAIP1Q13794 54 aa5.78□□□□□ -1.48
CD44-210ENST00000434472 VPS13BQ7Z7G8 4022 aa5.78□□□□□ -1.48
CD44-210ENST00000434472 SMR3BP02814 79 aaPredicted RBP5.77□□□□□ -1.48
CD44-210ENST00000434472 A8MU10 97 aa5.77□□□□□ -1.49
CD44-210ENST00000434472 SPINK7P58062 85 aa5.76□□□□□ -1.49
CD44-210ENST00000434472 SPTSSBQ8NFR3 76 aa5.76□□□□□ -1.49
CD44-210ENST00000434472 A0A1B0GU69 56 aa5.75□□□□□ -1.49
CD44-210ENST00000434472 KRTAP10-4P60372 401 aaPredicted RBP5.74□□□□□ -1.49
CD44-210ENST00000434472 A8MUU9 505 aa5.74□□□□□ -1.49
CD44-210ENST00000434472 DYNC1H1Q14204 4646 aaKnown RBP5.73□□□□□ -1.49
CD44-210ENST00000434472 C20orf166-AS1Q96NR2 134 aa5.73□□□□□ -1.49
CD44-210ENST00000434472 A6NN06 94 aa5.69□□□□□ -1.5
CD44-210ENST00000434472 C9orf92A6NGG3 77 aa5.67□□□□□ -1.5
CD44-210ENST00000434472 KTN1-AS1Q86SY8 53 aa5.67□□□□□ -1.5
CD44-210ENST00000434472 PKHD1L1Q86WI1 4243 aa5.67□□□□□ -1.5
CD44-210ENST00000434472 UQCR11O14957 56 aa5.66□□□□□ -1.5
CD44-210ENST00000434472 SPATA8Q6RVD6 105 aa5.66□□□□□ -1.5
CD44-210ENST00000434472 KRTAP3-3Q9BYR6 98 aa5.66□□□□□ -1.5
CD44-210ENST00000434472 KRTAP3-2Q9BYR7 98 aa5.66□□□□□ -1.5
CD44-210ENST00000434472 SEC61GP60059 68 aa5.65□□□□□ -1.51
CD44-210ENST00000434472 Q8N1X5 172 aa5.65□□□□□ -1.51
CD44-210ENST00000434472 KMT2CQ8NEZ4 4911 aaKnown RBP5.64□□□□□ -1.51
CD44-210ENST00000434472 APOBP04114 4563 aaKnown RBP5.64□□□□□ -1.51
CD44-210ENST00000434472 PKHD1P08F94 4074 aa5.64□□□□□ -1.51
CD44-210ENST00000434472 MIR22HGQ0VDD5 57 aa5.63□□□□□ -1.51
CD44-210ENST00000434472 RYR2Q92736 4967 aa5.6□□□□□ -1.51
CD44-210ENST00000434472 RYR3Q15413 4870 aa5.59□□□□□ -1.51
CD44-210ENST00000434472 KRTAP10-8P60410 259 aa5.57□□□□□ -1.52
CD44-210ENST00000434472 FAT1Q14517 4588 aa5.55□□□□□ -1.52
CD44-210ENST00000434472 COX6B2Q6YFQ2 88 aa5.54□□□□□ -1.52
CD44-210ENST00000434472 KRTAP3-1Q9BYR8 98 aa5.54□□□□□ -1.52
CD44-210ENST00000434472 Q5VSD8 79 aa5.53□□□□□ -1.52
CD44-210ENST00000434472 FLG2Q5D862 2391 aaPredicted RBP5.49□□□□□ -1.53
CD44-210ENST00000434472 RPL37P61927 97 aaKnown RBP5.49□□□□□ -1.53
CD44-210ENST00000434472 RBM12B-AS1Q9P1G2 102 aa5.47□□□□□ -1.53
CD44-210ENST00000434472 A0A1B0GU33 70 aa5.45□□□□□ -1.54
CD44-210ENST00000434472 H1FX-AS1Q4G0G2 97 aa5.45□□□□□ -1.54
CD44-210ENST00000434472 FAT3Q8TDW7 4589 aa5.44□□□□□ -1.54
CD44-210ENST00000434472 XP32Q5T750 250 aa5.43□□□□□ -1.54
CD44-210ENST00000434472 TNXBP22105 4242 aa5.42□□□□□ -1.54
CD44-210ENST00000434472 BIRC6Q9NR09 4857 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms