RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 KRTAP10-1P60331 282 aa6.9□□□□□ -1.3
PTCH1-208ENST00000430669 Q6ZSA8 131 aa6.9□□□□□ -1.3
PTCH1-208ENST00000430669 RPS29P62273 56 aaKnown RBP6.9□□□□□ -1.31
PTCH1-208ENST00000430669 KRTAP10-2P60368 255 aa6.89□□□□□ -1.31
PTCH1-208ENST00000430669 CDC42SE1Q9NRR8 79 aa6.87□□□□□ -1.31
PTCH1-208ENST00000430669 HRES1P13985 223 aa6.87□□□□□ -1.31
PTCH1-208ENST00000430669 Q75L30 129 aa6.87□□□□□ -1.31
PTCH1-208ENST00000430669 FP248Q71RG6 208 aaPredicted RBP6.85□□□□□ -1.31
PTCH1-208ENST00000430669 CAMK2N1Q7Z7J9 78 aa6.85□□□□□ -1.31
PTCH1-208ENST00000430669 Q5W150 140 aa6.84□□□□□ -1.31
PTCH1-208ENST00000430669 Q8N1X5 172 aa6.84□□□□□ -1.31
PTCH1-208ENST00000430669 Q5XG85 94 aa6.83□□□□□ -1.32
PTCH1-208ENST00000430669 A0A0D9SG42 100 aa6.83□□□□□ -1.32
PTCH1-208ENST00000430669 Q5VSD8 79 aa6.82□□□□□ -1.32
PTCH1-208ENST00000430669 PANO1I0J062 215 aa6.82□□□□□ -1.32
PTCH1-208ENST00000430669 KRTAP13-1Q8IUC0 172 aa6.8□□□□□ -1.32
PTCH1-208ENST00000430669 TRRAPQ9Y4A5 3859 aa6.79□□□□□ -1.32
PTCH1-208ENST00000430669 KRTAP29-1A8MX34 341 aaPredicted RBP6.79□□□□□ -1.32
PTCH1-208ENST00000430669 KTN1-AS1Q86SY8 53 aa6.79□□□□□ -1.32
PTCH1-208ENST00000430669 ZNF469Q96JG9 3925 aaPredicted RBP6.78□□□□□ -1.32
PTCH1-208ENST00000430669 VWFP04275 2813 aa6.78□□□□□ -1.32
PTCH1-208ENST00000430669 LINC01558Q9Y6Z2 57 aa6.78□□□□□ -1.32
PTCH1-208ENST00000430669 KRTAP7-1Q8IUC3 87 aa6.77□□□□□ -1.33
PTCH1-208ENST00000430669 CYSTM1Q9H1C7 97 aa6.76□□□□□ -1.33
PTCH1-208ENST00000430669 TENM1Q9UKZ4 2725 aa6.76□□□□□ -1.33
PTCH1-208ENST00000430669 DMAC1Q96GE9 116 aa6.75□□□□□ -1.33
PTCH1-208ENST00000430669 Q8N9P0 234 aaPredicted RBP6.75□□□□□ -1.33
PTCH1-208ENST00000430669 TENM3Q9P273 2699 aa6.75□□□□□ -1.33
PTCH1-208ENST00000430669 S4R3F8 94 aa6.74□□□□□ -1.33
PTCH1-208ENST00000430669 A0A087X002 238 aa6.73□□□□□ -1.33
PTCH1-208ENST00000430669 SEC61BP60468 96 aaKnown RBP6.73□□□□□ -1.33
PTCH1-208ENST00000430669 CSMD2Q7Z408 3487 aa6.72□□□□□ -1.33
PTCH1-208ENST00000430669 KRTAP11-1Q8IUC1 163 aa6.72□□□□□ -1.33
PTCH1-208ENST00000430669 A0A1B0GU33 70 aa6.71□□□□□ -1.33
PTCH1-208ENST00000430669 SPINK7P58062 85 aa6.71□□□□□ -1.34
PTCH1-208ENST00000430669 OTOGQ6ZRI0 2925 aa6.7□□□□□ -1.34
PTCH1-208ENST00000430669 OXTP01178 125 aa6.7□□□□□ -1.34
PTCH1-208ENST00000430669 CSAG1Q6PB30 78 aa6.67□□□□□ -1.34
PTCH1-208ENST00000430669 ANK3Q12955 4377 aaKnown RBP6.67□□□□□ -1.34
PTCH1-208ENST00000430669 Q5VV11 94 aa6.64□□□□□ -1.35
PTCH1-208ENST00000430669 LCA10Q71F78 164 aa6.63□□□□□ -1.35
PTCH1-208ENST00000430669 TGP01266 2768 aa6.62□□□□□ -1.35
PTCH1-208ENST00000430669 PLAC4Q8WY50 150 aa6.6□□□□□ -1.35
PTCH1-208ENST00000430669 KRTAP13-2Q52LG2 175 aa6.58□□□□□ -1.36
PTCH1-208ENST00000430669 FBN1P35555 2871 aaKnown RBP6.56□□□□□ -1.36
PTCH1-208ENST00000430669 R4GN34 69 aa6.55□□□□□ -1.36
PTCH1-208ENST00000430669 NOTCH2NLQ7Z3S9 236 aa6.54□□□□□ -1.36
PTCH1-208ENST00000430669 PKD1L1Q8TDX9 2849 aa6.53□□□□□ -1.36
PTCH1-208ENST00000430669 CUBNO60494 3623 aa6.52□□□□□ -1.37
PTCH1-208ENST00000430669 TENM2Q9NT68 2774 aa6.51□□□□□ -1.37
PTCH1-208ENST00000430669 H1FX-AS1Q4G0G2 97 aa6.49□□□□□ -1.37
PTCH1-208ENST00000430669 A8MUU9 505 aa6.47□□□□□ -1.37
PTCH1-208ENST00000430669 C20orf166-AS1Q96NR2 134 aa6.45□□□□□ -1.38
PTCH1-208ENST00000430669 RPL37P61927 97 aaKnown RBP6.43□□□□□ -1.38
PTCH1-208ENST00000430669 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.39
PTCH1-208ENST00000430669 A0A0A0MQY5 61 aa6.39□□□□□ -1.39
PTCH1-208ENST00000430669 SPATA8Q6RVD6 105 aa6.39□□□□□ -1.39
PTCH1-208ENST00000430669 H3BS24 57 aa6.38□□□□□ -1.39
PTCH1-208ENST00000430669 CMYA5Q8N3K9 4069 aa6.37□□□□□ -1.39
PTCH1-208ENST00000430669 ROMO1P60602 79 aa6.36□□□□□ -1.39
PTCH1-208ENST00000430669 ADM2Q7Z4H4 148 aa6.36□□□□□ -1.39
PTCH1-208ENST00000430669 M0QZ58 72 aa6.33□□□□□ -1.4
PTCH1-208ENST00000430669 COL7A1Q02388 2944 aa6.31□□□□□ -1.4
PTCH1-208ENST00000430669 HUWE1Q7Z6Z7 4374 aaKnown RBP6.26□□□□□ -1.41
PTCH1-208ENST00000430669 TPRXLQ17RH7 258 aa6.25□□□□□ -1.41
PTCH1-208ENST00000430669 ALMS1Q8TCU4 4167 aa6.24□□□□□ -1.41
PTCH1-208ENST00000430669 DNAH3Q8TD57 4116 aa6.24□□□□□ -1.41
PTCH1-208ENST00000430669 ANK2Q01484 3957 aa6.23□□□□□ -1.41
PTCH1-208ENST00000430669 A0A1B0GVY2 172 aa6.23□□□□□ -1.41
PTCH1-208ENST00000430669 MEGF8Q7Z7M0 2845 aa6.22□□□□□ -1.41
PTCH1-208ENST00000430669 KRTAP16-1A8MUX0 517 aa6.21□□□□□ -1.41
PTCH1-208ENST00000430669 XP32Q5T750 250 aa6.21□□□□□ -1.42
PTCH1-208ENST00000430669 PRAC1Q96KF2 57 aa6.2□□□□□ -1.42
PTCH1-208ENST00000430669 A6NN06 94 aa6.17□□□□□ -1.42
PTCH1-208ENST00000430669 FBN3Q75N90 2809 aa6.15□□□□□ -1.43
PTCH1-208ENST00000430669 CSMD3Q7Z407 3707 aa6.13□□□□□ -1.43
PTCH1-208ENST00000430669 KRTAP13-3Q3SY46 172 aa6.1□□□□□ -1.43
PTCH1-208ENST00000430669 KRTAP10-8P60410 259 aa6.08□□□□□ -1.44
PTCH1-208ENST00000430669 HECTD4Q9Y4D8 3996 aa6.07□□□□□ -1.44
PTCH1-208ENST00000430669 DNAH6Q9C0G6 4158 aa6.05□□□□□ -1.44
PTCH1-208ENST00000430669 KRTAP25-1Q3LHN0 102 aa6.04□□□□□ -1.44
PTCH1-208ENST00000430669 DNAH7Q8WXX0 4024 aa6.03□□□□□ -1.44
PTCH1-208ENST00000430669 A8MU10 97 aa6.02□□□□□ -1.45
PTCH1-208ENST00000430669 SRRM2Q9UQ35 2752 aaKnown RBP6□□□□□ -1.45
PTCH1-208ENST00000430669 LYSTQ99698 3801 aa5.99□□□□□ -1.45
PTCH1-208ENST00000430669 KMT2AQ03164 3969 aa5.98□□□□□ -1.45
PTCH1-208ENST00000430669 DNAH9Q9NYC9 4486 aa5.96□□□□□ -1.46
PTCH1-208ENST00000430669 H0YAA0 97 aa5.93□□□□□ -1.46
PTCH1-208ENST00000430669 TNP1P09430 55 aa5.92□□□□□ -1.46
PTCH1-208ENST00000430669 PP632Q6XCG6 107 aa5.9□□□□□ -1.46
PTCH1-208ENST00000430669 DNAH1Q9P2D7 4330 aa5.9□□□□□ -1.47
PTCH1-208ENST00000430669 PRKDCP78527 4128 aaKnown RBP5.87□□□□□ -1.47
PTCH1-208ENST00000430669 FRAS1Q86XX4 4008 aa5.85□□□□□ -1.47
PTCH1-208ENST00000430669 VPS13BQ7Z7G8 4022 aa5.82□□□□□ -1.48
PTCH1-208ENST00000430669 PRO2289Q9P1D8 64 aa5.82□□□□□ -1.48
PTCH1-208ENST00000430669 P0C880 135 aa5.8□□□□□ -1.48
PTCH1-208ENST00000430669 DYNC2H1Q8NCM8 4307 aaKnown RBP5.8□□□□□ -1.48
PTCH1-208ENST00000430669 C10orf95Q9H7T3 257 aa5.77□□□□□ -1.49
PTCH1-208ENST00000430669 NDUFAF8A1L188 74 aa5.75□□□□□ -1.49
PTCH1-208ENST00000430669 VPS13DQ5THJ4 4388 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms